3F43 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	117
structure length	117
Chain Sequence	HHHHHMFPYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVERVLSLTNLDRIVKIYDTISEAMEEVRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Thermotoga maritima
publication title	Crystal structure of Putative anti-sigma factor antagonist TM1081 (TM1081) from THERMOTOGA MARITIMA at 1.59 A resolution rcsb
molecule keywords	Putative anti-sigma factor antagonist TM1081
total genus	34
structure length	117
sequence length	117
ec nomenclature
pdb deposition date	2008-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	3f43A01

5EZBA 4HYLA 3IHBA 3NY7A 3LKLA 3ZTBA 2KLNA 3IH8A 4DGFA 3OIRA 1H4ZA 3AGDA 3T6OA 3IF5A 3AGEA 2KA5A 5EUSA 5EUZA 1SBOA 4QTPA 1TH8B 1VC1A 1H4XA 3ZXNA 5EUUA 5EUWA 3MGLA 1THNB 3OIZA 3IHAA 3LLOA 1TIDB 3IH9A 4XS5A 1AUZA 1TILB 5EUXA 3F43A 1T6RA 1BUZA 4DGHA 2VY9A 1H4YA
chains in the Genus database with same CATH superfamily

1FC6A 3LKLA 4AEJA 3IH8A 4DGFA 1FCFA 3GHFA 3V97A 3DUPA 3C0KA 1J7XA 1N6FA 1VC1A 1H4XA 3GVJA 5EUUA 5EUWA 3JU4A 1V0FA 3D03A 1WXXA 4DGHA 1H4YA 1V0EA 4HYLA 4AE2A 3GMFA 3IHBA 2KLNA 1K32A 1BPLA 1H4ZA 3MOGA 3DJAA 4HIZA 2KA5A 3VSEA 1SBOA 3GVKA 2CWWA 4GHNA 2RRLA 1WXWA 4L8KA 1TILB 2OASA 4XS5A 1HF2A 3ZTBA 2AS0A 3AGDA 3QDQA 4L1CA 3DORA 3D3UA 3GVLA 5EUSA 1TH8B 3EH7A 2B78A 3IHAA 3IH9A 1FC7A 5EUXA 3F43A 1T6RA 1FC9A 5EZBA 3K50A 3NY7A 2ZOAA 3OIRA 2DXLA 3T6OA 1N6DA 3IF5A 4JC0A 3AGEA 3V8VA 2DXNA 5EUZA 3LDFA 4QTPA 2ZO9B 3ZXNA 3MGLA 1THNB 3OIZA 3LLOA 1TIDB 4DMGA 1N6EA 1AUZA 3GK7A 1BUZA 2VY9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5EZB A;  4HYL A;  3IHB A;  3NY7 A;  3LKL A;  3ZTB A;  2KLN A;  3IH8 A;  4DGF A;  3OIR A;  1H4Z A;  3AGD A;  3T6O A;  3IF5 A;  3AGE A;  2KA5 A;  5EUS A;  5EUZ A;  1SBO A;  4QTP A;  1TH8 B;  1VC1 A;  1H4X A;  3ZXN A;  5EUU A;  5EUW A;  3MGL A;  1THN B;  3OIZ A;  3IHA A;  3LLO A;  1TID B;  3IH9 A;  4XS5 A;  1AUZ A;  1TIL B;  5EUX A;  3F43 A;  1T6R A;  1BUZ A;  4DGH A;  2VY9 A;  1H4Y A; 
#chains in the Genus database with same CATH topology
 1FC6 A;  3LKL A;  4AEJ A;  3IH8 A;  4DGF A;  1FCF A;  3GHF A;  3V97 A;  3DUP A;  3C0K A;  1J7X A;  1N6F A;  1VC1 A;  1H4X A;  3GVJ A;  5EUU A;  5EUW A;  3JU4 A;  1V0F A;  3D03 A;  1WXX A;  4DGH A;  1H4Y A;  1V0E A;  4HYL A;  4AE2 A;  3GMF A;  3IHB A;  2KLN A;  1K32 A;  1BPL A;  1H4Z A;  3MOG A;  3DJA A;  4HIZ A;  2KA5 A;  3VSE A;  1SBO A;  3GVK A;  2CWW A;  4GHN A;  2RRL A;  1WXW A;  4L8K A;  1TIL B;  2OAS A;  4XS5 A;  1HF2 A;  3ZTB A;  2AS0 A;  3AGD A;  3QDQ A;  4L1C A;  3DOR A;  3D3U A;  3GVL A;  5EUS A;  1TH8 B;  3EH7 A;  2B78 A;  3IHA A;  3IH9 A;  1FC7 A;  5EUX A;  3F43 A;  1T6R A;  1FC9 A;  5EZB A;  3K50 A;  3NY7 A;  2ZOA A;  3OIR A;  2DXL A;  3T6O A;  1N6D A;  3IF5 A;  4JC0 A;  3AGE A;  3V8V A;  2DXN A;  5EUZ A;  3LDF A;  4QTP A;  2ZO9 B;  3ZXN A;  3MGL A;  1THN B;  3OIZ A;  3LLO A;  1TID B;  4DMG A;  1N6E A;  1AUZ A;  3GK7 A;  1BUZ A;  2VY9 A; 
#chains in the Genus database with same CATH homology
 5EZB A;  4HYL A;  3IHB A;  3NY7 A;  3LKL A;  3ZTB A;  2KLN A;  3IH8 A;  4DGF A;  3OIR A;  1H4Z A;  3AGD A;  3T6O A;  3IF5 A;  3AGE A;  2KA5 A;  5EUS A;  5EUZ A;  1SBO A;  4QTP A;  1TH8 B;  1VC1 A;  1H4X A;  3ZXN A;  5EUU A;  5EUW A;  3MGL A;  1THN B;  3OIZ A;  3IHA A;  3LLO A;  1TID B;  3IH9 A;  4XS5 A;  1AUZ A;  1TIL B;  5EUX A;  3F43 A;  1T6R A;  1BUZ A;  4DGH A;  2VY9 A;  1H4Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3F43A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations