The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
249
|
structure length |
214
|
Chain Sequence |
TDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKEGFILSFHFAPNPFFSNSVLTKTYHMKPVLLHTEATVIDWYDNKNILKKNVVKVQQTVNRDSFFHFFTSHKVPEVAQLEMIIEGDYEVALTIKERIIPYAVDYFLGII
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Nucleosome Assembly Protein 1 from Plasmodium knowlesi
rcsb |
| molecule keywords |
Nucleosome assembly protein 1
|
| molecule tags |
Chaperone, protein transport
|
| source organism |
Plasmodium knowlesi strain h
|
| total genus |
60
|
| structure length |
214
|
| sequence length |
249
|
| ec nomenclature | |
| pdb deposition date | 2009-05-11 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Arylsulfatase, C-terminal domain | Arylsulfatase, C-terminal domain |
#chains in the Genus database with same CATH superfamily 3GYW A; 2E50 A; 5DAY A; 3GYV A; 3FS3 A; 3HFD A; #chains in the Genus database with same CATH topology 3C5L A; 2N19 A; 4YYP A; 1Q4K A; 2IA9 A; 3P34 A; 4RCP A; 3GYV A; 4WHK A; 3P37 A; 4HY2 A; 4X9V A; 5AJ9 A; 1N2K A; 4HCO A; 4O56 A; 4WHL A; 5DMS A; 4E9D A; 1N2L A; 1E2T A; 4O9W A; 4CXU A; 3GYW A; 3LM3 A; 4NK7 A; 1AUK A; 4LKL A; 1P49 A; 4CXS A; 2I9Z A; 3P2Z A; 3LXQ A; 3HMJ G; 1E1Z P; 4N9J A; 4HAB A; 3KDR A; 3Q1I A; 4CYS A; 4E9C A; 2E50 A; 4NKB A; 4H5X A; 1F32 A; 2OGQ A; 2I9X A; 3P2W A; 3ED4 A; 3BZI A; 3FVH A; 2UV8 G; 4G7N A; 3HFD A; 3HIK A; 1UMW A; 5DMV C; 1E33 P; 1Q4O A; 4N7Z A; 4RS6 A; 3HIH A; 1HDH A; 3FS3 A; 4J7B B; 3P35 A; 2OJX A; 3P36 A; 1A87 A; 4CXK A; 4X9R A; 1F34 B; 1E3C P; 4H71 A; 4CYR A; 4DFW A; 5DAY A; 4LKM A; 2QZU A; 4N7V A; 4X9W A; 4E67 A; 3RQ7 A; 4FDJ A; 4WHH A; 5LHZ A; 1E2S P; 2VKZ G; 4XB0 A; 1FSU A; 5J19 A; 4FDI A; 4O6W A; 5DNJ A; #chains in the Genus database with same CATH homology 1E3C P; 3GYW A; 3LM3 A; 4NK7 A; 2UV8 G; 4G7N A; 1AUK A; 4CYR A; 1P49 A; 3HFD A; 4CXS A; 5DAY A; 3LXQ A; 2QZU A; 4N7V A; 3HMJ G; 3GYV A; 1E33 P; 1E1Z P; 4N9J A; 4FDJ A; 5AJ9 A; 1N2K A; 4N7Z A; 3KDR A; 1E2S P; 1HDH A; 2VKZ G; 3FS3 A; 4CYS A; 1FSU A; 1N2L A; 1E2T A; 2E50 A; 4NKB A; 4FDI A; 4CXU A; 4CXK A; 3ED4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
