3LLO | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	143
structure length	132
Chain Sequence	SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSANIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 132 atoms

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132 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Motor protein
source organism	Rattus norvegicus
publication title	Structure of the cytosolic portion of the motor protein prestin and functional role of the STAS domain in SLC26/SulP anion transporters. pubmed doi rcsb
molecule keywords	Prestin
total genus	44
structure length	132
sequence length	143
ec nomenclature
pdb deposition date	2010-01-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	3lloA00

1TH8B 3ZXNA 3F43A 5EUXA 5EUWA 3LLOA 3AGEA 2KA5A 3IHAA 5EUSA 1TIDB 1H4XA 3MGLA 5EUZA 4XS5A 4DGHA 3T6OA 3IHBA 3OIRA 1VC1A 1AUZA 3IF5A 3IH9A 3OIZA 1T6RA 3ZTBA 1TILB 2KLNA 1BUZA 5EZBA 5EUUA 1THNB 3IH8A 4HYLA 3AGDA 4DGFA 2VY9A 1H4YA 3LKLA 4QTPA 1H4ZA 3NY7A 1SBOA
chains in the Genus database with same CATH superfamily

1TH8B 3DORA 3DJAA 1K32A 3IHAA 3K50A 4XS5A 3IHBA 3OIRA 3OIZA 1WXWA 1TILB 4AE2A 4JC0A 1THNB 4L1CA 2AS0A 1V0EA 3QDQA 3LKLA 4QTPA 3LDFA 1N6EA 2DXLA 4HIZA 3F43A 1TIDB 1H4XA 4AEJA 4DGHA 2ZO9B 3IF5A 3IH9A 3C0KA 2KLNA 3JU4A 5EZBA 2B78A 2ZOAA 4DMGA 3IH8A 4HYLA 3AGDA 4DGFA 4GHNA 3NY7A 3ZXNA 1N6DA 3GMFA 3VSEA 1N6FA 3V8VA 1VC1A 3ZTBA 2DXNA 3GVJA 1FC9A 5EUUA 1FC7A 2RRLA 2VY9A 1H4YA 1WXXA 3V97A 1BPLA 5EUXA 5EUWA 3LLOA 3GVKA 1FCFA 3AGEA 3GVLA 4L8KA 2KA5A 5EUSA 1FC6A 3MGLA 3GK7A 5EUZA 1J7XA 3D03A 3T6OA 3MOGA 1AUZA 1T6RA 3EH7A 1BUZA 1HF2A 2OASA 3GHFA 3D3UA 1V0FA 2CWWA 1H4ZA 3DUPA 1SBOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1TH8 B;  3ZXN A;  3F43 A;  5EUX A;  5EUW A;  3LLO A;  3AGE A;  2KA5 A;  3IHA A;  5EUS A;  1TID B;  1H4X A;  3MGL A;  5EUZ A;  4XS5 A;  4DGH A;  3T6O A;  3IHB A;  3OIR A;  1VC1 A;  1AUZ A;  3IF5 A;  3IH9 A;  3OIZ A;  1T6R A;  3ZTB A;  1TIL B;  2KLN A;  1BUZ A;  5EZB A;  5EUU A;  1THN B;  3IH8 A;  4HYL A;  3AGD A;  4DGF A;  2VY9 A;  1H4Y A;  3LKL A;  4QTP A;  1H4Z A;  3NY7 A;  1SBO A; 
#chains in the Genus database with same CATH topology
 1TH8 B;  3DOR A;  3DJA A;  1K32 A;  3IHA A;  3K50 A;  4XS5 A;  3IHB A;  3OIR A;  3OIZ A;  1WXW A;  1TIL B;  4AE2 A;  4JC0 A;  1THN B;  4L1C A;  2AS0 A;  1V0E A;  3QDQ A;  3LKL A;  4QTP A;  3LDF A;  1N6E A;  2DXL A;  4HIZ A;  3F43 A;  1TID B;  1H4X A;  4AEJ A;  4DGH A;  2ZO9 B;  3IF5 A;  3IH9 A;  3C0K A;  2KLN A;  3JU4 A;  5EZB A;  2B78 A;  2ZOA A;  4DMG A;  3IH8 A;  4HYL A;  3AGD A;  4DGF A;  4GHN A;  3NY7 A;  3ZXN A;  1N6D A;  3GMF A;  3VSE A;  1N6F A;  3V8V A;  1VC1 A;  3ZTB A;  2DXN A;  3GVJ A;  1FC9 A;  5EUU A;  1FC7 A;  2RRL A;  2VY9 A;  1H4Y A;  1WXX A;  3V97 A;  1BPL A;  5EUX A;  5EUW A;  3LLO A;  3GVK A;  1FCF A;  3AGE A;  3GVL A;  4L8K A;  2KA5 A;  5EUS A;  1FC6 A;  3MGL A;  3GK7 A;  5EUZ A;  1J7X A;  3D03 A;  3T6O A;  3MOG A;  1AUZ A;  1T6R A;  3EH7 A;  1BUZ A;  1HF2 A;  2OAS A;  3GHF A;  3D3U A;  1V0F A;  2CWW A;  1H4Z A;  3DUP A;  1SBO A; 
#chains in the Genus database with same CATH homology
 1TH8 B;  3ZXN A;  3F43 A;  5EUX A;  5EUW A;  3LLO A;  3AGE A;  2KA5 A;  3IHA A;  5EUS A;  1TID B;  1H4X A;  3MGL A;  5EUZ A;  4XS5 A;  4DGH A;  3T6O A;  3IHB A;  3OIR A;  1VC1 A;  1AUZ A;  3IF5 A;  3IH9 A;  3OIZ A;  1T6R A;  3ZTB A;  1TIL B;  2KLN A;  1BUZ A;  5EZB A;  5EUU A;  1THN B;  3IH8 A;  4HYL A;  3AGD A;  4DGF A;  2VY9 A;  1H4Y A;  3LKL A;  4QTP A;  1H4Z A;  3NY7 A;  1SBO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LLOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations