3MGLA

Crystal structure of permease family protein from vibrio cholerae
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
128
structure length
128
Chain Sequence
NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of permease family protein from Vibrio cholerae
rcsb
molecule tags Transport protein
source organism Vibrio cholerae o1 biovar el tor
molecule keywords Sulfate permease family protein
total genus 42
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3mglA00
1H4ZA 1T6RA 3IH8A 3F43A 1VC1A 2KLNA 4XS5A 5EUXA 3LKLA 5EUSA 1H4YA 3ZTBA 1H4XA 4QTPA 1TH8B 4DGFA 3IF5A 3NY7A 3OIRA 4DGHA 2KA5A 1SBOA 3IHBA 5EUWA 3T6OA 3AGEA 3MGLA 4HYLA 1AUZA 5EUZA 3LLOA 3ZXNA 3AGDA 3IHAA 1THNB 3IH9A 1BUZA 3OIZA 5EUUA 2VY9A 5EZBA 1TIDB 1TILB
chains in the Genus database with same CATH superfamily
3D03A 2DXLA 3C0KA 1HF2A 1FC6A 2AS0A 4XS5A 3DUPA 1N6EA 4DGFA 1WXXA 2B78A 3OIRA 4DGHA 1WXWA 1BPLA 3D3UA 1V0EA 3T6OA 2CWWA 3AGEA 1K32A 3IHAA 3IH9A 1FC7A 1N6DA 5EZBA 1N6FA 4JC0A 3IH8A 1V0FA 1VC1A 2DXNA 5EUXA 3LKLA 4L1CA 1H4YA 2ZO9B 1TH8B 3V8VA 4AE2A 3NY7A 2KA5A 4HIZA 3IHBA 5EUZA 4L8KA 1FCFA 3ZXNA 3LDFA 3GMFA 2VY9A 3GVLA 3MOGA 3GVKA 3VSEA 1J7XA 1H4ZA 3DORA 2ZOAA 3GVJA 4DMGA 3DJAA 3IF5A 3QDQA 3K50A 5EUWA 3MGLA 4HYLA 1AUZA 4GHNA 2OASA 3AGDA 1THNB 1BUZA 3EH7A 3JU4A 4AEJA 1TIDB 3GHFA 1TILB 1T6RA 3F43A 2KLNA 5EUSA 3ZTBA 1H4XA 3V97A 3GK7A 4QTPA 1SBOA 1FC9A 2RRLA 3LLOA 3OIZA 5EUUA
chains in the Genus database with same CATH topology
1H4ZA 1T6RA 3IH8A 3F43A 1VC1A 2KLNA 4XS5A 5EUXA 3LKLA 5EUSA 1H4YA 3ZTBA 1H4XA 4QTPA 1TH8B 4DGFA 3IF5A 3NY7A 3OIRA 4DGHA 2KA5A 1SBOA 3IHBA 5EUWA 3T6OA 3AGEA 3MGLA 4HYLA 1AUZA 5EUZA 3LLOA 3ZXNA 3AGDA 3IHAA 1THNB 3IH9A 1BUZA 3OIZA 5EUUA 2VY9A 5EZBA 1TIDB 1TILB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4Z A;  1T6R A;  3IH8 A;  3F43 A;  1VC1 A;  2KLN A;  4XS5 A;  5EUX A;  3LKL A;  5EUS A;  1H4Y A;  3ZTB A;  1H4X A;  4QTP A;  1TH8 B;  4DGF A;  3IF5 A;  3NY7 A;  3OIR A;  4DGH A;  2KA5 A;  1SBO A;  3IHB A;  5EUW A;  3T6O A;  3AGE A;  3MGL A;  4HYL A;  1AUZ A;  5EUZ A;  3LLO A;  3ZXN A;  3AGD A;  3IHA A;  1THN B;  3IH9 A;  1BUZ A;  3OIZ A;  5EUU A;  2VY9 A;  5EZB A;  1TID B;  1TIL B; 
#chains in the Genus database with same CATH topology
 3D03 A;  2DXL A;  3C0K A;  1HF2 A;  1FC6 A;  2AS0 A;  4XS5 A;  3DUP A;  1N6E A;  4DGF A;  1WXX A;  2B78 A;  3OIR A;  4DGH A;  1WXW A;  1BPL A;  3D3U A;  1V0E A;  3T6O A;  2CWW A;  3AGE A;  1K32 A;  3IHA A;  3IH9 A;  1FC7 A;  1N6D A;  5EZB A;  1N6F A;  4JC0 A;  3IH8 A;  1V0F A;  1VC1 A;  2DXN A;  5EUX A;  3LKL A;  4L1C A;  1H4Y A;  2ZO9 B;  1TH8 B;  3V8V A;  4AE2 A;  3NY7 A;  2KA5 A;  4HIZ A;  3IHB A;  5EUZ A;  4L8K A;  1FCF A;  3ZXN A;  3LDF A;  3GMF A;  2VY9 A;  3GVL A;  3MOG A;  3GVK A;  3VSE A;  1J7X A;  1H4Z A;  3DOR A;  2ZOA A;  3GVJ A;  4DMG A;  3DJA A;  3IF5 A;  3QDQ A;  3K50 A;  5EUW A;  3MGL A;  4HYL A;  1AUZ A;  4GHN A;  2OAS A;  3AGD A;  1THN B;  1BUZ A;  3EH7 A;  3JU4 A;  4AEJ A;  1TID B;  3GHF A;  1TIL B;  1T6R A;  3F43 A;  2KLN A;  5EUS A;  3ZTB A;  1H4X A;  3V97 A;  3GK7 A;  4QTP A;  1SBO A;  1FC9 A;  2RRL A;  3LLO A;  3OIZ A;  5EUU A; 
#chains in the Genus database with same CATH homology
 1H4Z A;  1T6R A;  3IH8 A;  3F43 A;  1VC1 A;  2KLN A;  4XS5 A;  5EUX A;  3LKL A;  5EUS A;  1H4Y A;  3ZTB A;  1H4X A;  4QTP A;  1TH8 B;  4DGF A;  3IF5 A;  3NY7 A;  3OIR A;  4DGH A;  2KA5 A;  1SBO A;  3IHB A;  5EUW A;  3T6O A;  3AGE A;  3MGL A;  4HYL A;  1AUZ A;  5EUZ A;  3LLO A;  3ZXN A;  3AGD A;  3IHA A;  1THN B;  3IH9 A;  1BUZ A;  3OIZ A;  5EUU A;  2VY9 A;  5EZB A;  1TID B;  1TIL B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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