3MGLA

Crystal structure of permease family protein from vibrio cholerae
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
128
structure length
128
Chain Sequence
NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of permease family protein from Vibrio cholerae
rcsb
molecule keywords Sulfate permease family protein
molecule tags Transport protein
source organism Vibrio cholerae o1 biovar el tor
total genus 42
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3mglA00
1SBOA 3LLOA 3ZTBA 4DGHA 5EUUA 1TH8B 1AUZA 1BUZA 3LKLA 2VY9A 1TIDB 3AGEA 3F43A 5EUZA 3IH8A 4QTPA 3ZXNA 3IF5A 1VC1A 1T6RA 4HYLA 4XS5A 2KLNA 3IH9A 3OIRA 5EZBA 5EUXA 4DGFA 3IHAA 5EUWA 1THNB 1H4XA 3NY7A 1H4ZA 1TILB 5EUSA 3MGLA 1H4YA 2KA5A 3AGDA 3T6OA 3OIZA 3IHBA
chains in the Genus database with same CATH superfamily
1SBOA 4DGHA 3V97A 3GHFA 3MOGA 2CWWA 1BUZA 2VY9A 3AGEA 3DORA 3V8VA 4QTPA 1VC1A 1FC9A 4AEJA 2KLNA 3D03A 1WXWA 5EZBA 4DGFA 3IHAA 3DJAA 1THNB 3NY7A 2RRLA 3GMFA 1FC7A 1H4YA 3K50A 3GK7A 2KA5A 3AGDA 3D3UA 4JC0A 3T6OA 1K32A 3IHBA 2B78A 1TH8B 1AUZA 2OASA 1TIDB 1J7XA 2ZO9B 4GHNA 1T6RA 4XS5A 4AE2A 3DUPA 4L1CA 3OIRA 2ZOAA 3VSEA 4HIZA 1TILB 4L8KA 5EUSA 3MGLA 1WXXA 3GVJA 3GVLA 1HF2A 3OIZA 1V0EA 1N6DA 3C0KA 3LLOA 2AS0A 3EH7A 3LKLA 3F43A 5EUZA 3IH8A 2DXNA 3IF5A 5EUXA 5EUWA 3LDFA 1H4XA 1BPLA 1FC6A 3ZTBA 5EUUA 2DXLA 1N6EA 3ZXNA 4HYLA 1N6FA 3QDQA 3IH9A 4DMGA 3JU4A 1V0FA 1H4ZA 3GVKA 1FCFA
chains in the Genus database with same CATH topology
1SBOA 3LLOA 3ZTBA 4DGHA 5EUUA 1TH8B 1AUZA 1BUZA 3LKLA 2VY9A 1TIDB 3AGEA 3F43A 5EUZA 3IH8A 4QTPA 3ZXNA 3IF5A 1VC1A 1T6RA 4HYLA 4XS5A 2KLNA 3IH9A 3OIRA 5EZBA 5EUXA 4DGFA 3IHAA 5EUWA 1THNB 1H4XA 3NY7A 1H4ZA 1TILB 5EUSA 3MGLA 1H4YA 2KA5A 3AGDA 3T6OA 3OIZA 3IHBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SBO A;  3LLO A;  3ZTB A;  4DGH A;  5EUU A;  1TH8 B;  1AUZ A;  1BUZ A;  3LKL A;  2VY9 A;  1TID B;  3AGE A;  3F43 A;  5EUZ A;  3IH8 A;  4QTP A;  3ZXN A;  3IF5 A;  1VC1 A;  1T6R A;  4HYL A;  4XS5 A;  2KLN A;  3IH9 A;  3OIR A;  5EZB A;  5EUX A;  4DGF A;  3IHA A;  5EUW A;  1THN B;  1H4X A;  3NY7 A;  1H4Z A;  1TIL B;  5EUS A;  3MGL A;  1H4Y A;  2KA5 A;  3AGD A;  3T6O A;  3OIZ A;  3IHB A; 
#chains in the Genus database with same CATH topology
 1SBO A;  4DGH A;  3V97 A;  3GHF A;  3MOG A;  2CWW A;  1BUZ A;  2VY9 A;  3AGE A;  3DOR A;  3V8V A;  4QTP A;  1VC1 A;  1FC9 A;  4AEJ A;  2KLN A;  3D03 A;  1WXW A;  5EZB A;  4DGF A;  3IHA A;  3DJA A;  1THN B;  3NY7 A;  2RRL A;  3GMF A;  1FC7 A;  1H4Y A;  3K50 A;  3GK7 A;  2KA5 A;  3AGD A;  3D3U A;  4JC0 A;  3T6O A;  1K32 A;  3IHB A;  2B78 A;  1TH8 B;  1AUZ A;  2OAS A;  1TID B;  1J7X A;  2ZO9 B;  4GHN A;  1T6R A;  4XS5 A;  4AE2 A;  3DUP A;  4L1C A;  3OIR A;  2ZOA A;  3VSE A;  4HIZ A;  1TIL B;  4L8K A;  5EUS A;  3MGL A;  1WXX A;  3GVJ A;  3GVL A;  1HF2 A;  3OIZ A;  1V0E A;  1N6D A;  3C0K A;  3LLO A;  2AS0 A;  3EH7 A;  3LKL A;  3F43 A;  5EUZ A;  3IH8 A;  2DXN A;  3IF5 A;  5EUX A;  5EUW A;  3LDF A;  1H4X A;  1BPL A;  1FC6 A;  3ZTB A;  5EUU A;  2DXL A;  1N6E A;  3ZXN A;  4HYL A;  1N6F A;  3QDQ A;  3IH9 A;  4DMG A;  3JU4 A;  1V0F A;  1H4Z A;  3GVK A;  1FCF A; 
#chains in the Genus database with same CATH homology
 1SBO A;  3LLO A;  3ZTB A;  4DGH A;  5EUU A;  1TH8 B;  1AUZ A;  1BUZ A;  3LKL A;  2VY9 A;  1TID B;  3AGE A;  3F43 A;  5EUZ A;  3IH8 A;  4QTP A;  3ZXN A;  3IF5 A;  1VC1 A;  1T6R A;  4HYL A;  4XS5 A;  2KLN A;  3IH9 A;  3OIR A;  5EZB A;  5EUX A;  4DGF A;  3IHA A;  5EUW A;  1THN B;  1H4X A;  3NY7 A;  1H4Z A;  1TIL B;  5EUS A;  3MGL A;  1H4Y A;  2KA5 A;  3AGD A;  3T6O A;  3OIZ A;  3IHB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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