3MGLA

Crystal structure of permease family protein from vibrio cholerae
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
128
structure length
128
Chain Sequence
NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of permease family protein from Vibrio cholerae
rcsb
molecule tags Transport protein
source organism Vibrio cholerae o1 biovar el tor
molecule keywords Sulfate permease family protein
total genus 42
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3mglA00
2VY9A 3AGDA 1H4XA 3MGLA 5EUXA 3NY7A 3IF5A 1AUZA 4DGFA 5EZBA 3OIRA 3OIZA 5EUZA 1T6RA 5EUSA 3IH9A 3AGEA 4QTPA 3T6OA 1BUZA 1H4ZA 3ZTBA 2KA5A 3F43A 3IHBA 3IH8A 2KLNA 4DGHA 1TH8B 3IHAA 3LLOA 5EUWA 4XS5A 1H4YA 1TILB 3LKLA 1THNB 1TIDB 1SBOA 4HYLA 5EUUA 1VC1A 3ZXNA
chains in the Genus database with same CATH superfamily
1H4XA 3IF5A 1V0FA 1FCFA 3V8VA 4AE2A 3GMFA 3C0KA 4QTPA 2RRLA 3DORA 3F43A 3IHBA 3IH8A 2KLNA 3MOGA 3DUPA 1FC9A 1H4YA 3LKLA 3JU4A 5EUUA 2ZO9B 3AGDA 1N6EA 3QDQA 1AUZA 1N6DA 1WXWA 3OIRA 3OIZA 5EUZA 5EUSA 1BUZA 4DMGA 1H4ZA 3ZTBA 1WXXA 3EH7A 2DXLA 4AEJA 3IHAA 2B78A 3D03A 3DJAA 1J7XA 3GK7A 1TIDB 4HYLA 4JC0A 1HF2A 2CWWA 2VY9A 5EUXA 4HIZA 3NY7A 3GVLA 1FC6A 2AS0A 4L8KA 3IH9A 3AGEA 4GHNA 4DGHA 1TH8B 1BPLA 3LLOA 5EUWA 3GVJA 3GVKA 3LDFA 1VC1A 3MGLA 3V97A 1K32A 1V0EA 4DGFA 3VSEA 5EZBA 2ZOAA 4L1CA 1T6RA 2DXNA 3D3UA 3T6OA 2KA5A 3K50A 2OASA 4XS5A 3GHFA 1TILB 1THNB 1SBOA 1N6FA 1FC7A 3ZXNA
chains in the Genus database with same CATH topology
2VY9A 3AGDA 1H4XA 3MGLA 5EUXA 3NY7A 3IF5A 1AUZA 4DGFA 5EZBA 3OIRA 3OIZA 5EUZA 1T6RA 5EUSA 3IH9A 3AGEA 4QTPA 3T6OA 1BUZA 1H4ZA 3ZTBA 2KA5A 3F43A 3IHBA 3IH8A 2KLNA 4DGHA 1TH8B 3IHAA 3LLOA 5EUWA 4XS5A 1H4YA 1TILB 3LKLA 1THNB 1TIDB 1SBOA 4HYLA 5EUUA 1VC1A 3ZXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY9 A;  3AGD A;  1H4X A;  3MGL A;  5EUX A;  3NY7 A;  3IF5 A;  1AUZ A;  4DGF A;  5EZB A;  3OIR A;  3OIZ A;  5EUZ A;  1T6R A;  5EUS A;  3IH9 A;  3AGE A;  4QTP A;  3T6O A;  1BUZ A;  1H4Z A;  3ZTB A;  2KA5 A;  3F43 A;  3IHB A;  3IH8 A;  2KLN A;  4DGH A;  1TH8 B;  3IHA A;  3LLO A;  5EUW A;  4XS5 A;  1H4Y A;  1TIL B;  3LKL A;  1THN B;  1TID B;  1SBO A;  4HYL A;  5EUU A;  1VC1 A;  3ZXN A; 
#chains in the Genus database with same CATH topology
 1H4X A;  3IF5 A;  1V0F A;  1FCF A;  3V8V A;  4AE2 A;  3GMF A;  3C0K A;  4QTP A;  2RRL A;  3DOR A;  3F43 A;  3IHB A;  3IH8 A;  2KLN A;  3MOG A;  3DUP A;  1FC9 A;  1H4Y A;  3LKL A;  3JU4 A;  5EUU A;  2ZO9 B;  3AGD A;  1N6E A;  3QDQ A;  1AUZ A;  1N6D A;  1WXW A;  3OIR A;  3OIZ A;  5EUZ A;  5EUS A;  1BUZ A;  4DMG A;  1H4Z A;  3ZTB A;  1WXX A;  3EH7 A;  2DXL A;  4AEJ A;  3IHA A;  2B78 A;  3D03 A;  3DJA A;  1J7X A;  3GK7 A;  1TID B;  4HYL A;  4JC0 A;  1HF2 A;  2CWW A;  2VY9 A;  5EUX A;  4HIZ A;  3NY7 A;  3GVL A;  1FC6 A;  2AS0 A;  4L8K A;  3IH9 A;  3AGE A;  4GHN A;  4DGH A;  1TH8 B;  1BPL A;  3LLO A;  5EUW A;  3GVJ A;  3GVK A;  3LDF A;  1VC1 A;  3MGL A;  3V97 A;  1K32 A;  1V0E A;  4DGF A;  3VSE A;  5EZB A;  2ZOA A;  4L1C A;  1T6R A;  2DXN A;  3D3U A;  3T6O A;  2KA5 A;  3K50 A;  2OAS A;  4XS5 A;  3GHF A;  1TIL B;  1THN B;  1SBO A;  1N6F A;  1FC7 A;  3ZXN A; 
#chains in the Genus database with same CATH homology
 2VY9 A;  3AGD A;  1H4X A;  3MGL A;  5EUX A;  3NY7 A;  3IF5 A;  1AUZ A;  4DGF A;  5EZB A;  3OIR A;  3OIZ A;  5EUZ A;  1T6R A;  5EUS A;  3IH9 A;  3AGE A;  4QTP A;  3T6O A;  1BUZ A;  1H4Z A;  3ZTB A;  2KA5 A;  3F43 A;  3IHB A;  3IH8 A;  2KLN A;  4DGH A;  1TH8 B;  3IHA A;  3LLO A;  5EUW A;  4XS5 A;  1H4Y A;  1TIL B;  3LKL A;  1THN B;  1TID B;  1SBO A;  4HYL A;  5EUU A;  1VC1 A;  3ZXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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