3MGLA

Crystal structure of permease family protein from vibrio cholerae
Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
128
structure length
128
Chain Sequence
NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
source organism Vibrio cholerae o1 biovar el tor
publication title Crystal structure of permease family protein from Vibrio cholerae
rcsb
molecule keywords Sulfate permease family protein
total genus 42
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3mglA00
5EUSA 3AGDA 5EUWA 4XS5A 3AGEA 3F43A 2KLNA 1T6RA 3NY7A 1VC1A 3MGLA 3OIZA 1TH8B 3IF5A 3ZXNA 2KA5A 4HYLA 3IHBA 3LKLA 1AUZA 5EUXA 3ZTBA 1H4ZA 2VY9A 3IH9A 1SBOA 3OIRA 4DGHA 3IH8A 1TILB 1H4YA 1THNB 3T6OA 1BUZA 3LLOA 5EUZA 5EUUA 3IHAA 4QTPA 1TIDB 5EZBA 4DGFA 1H4XA
chains in the Genus database with same CATH superfamily
5EUWA 1FC9A 3V97A 2KLNA 1J7XA 2ZOAA 3ZXNA 3C0KA 3LKLA 1BPLA 1FC7A 3DJAA 3ZTBA 1H4ZA 3GVJA 3IH9A 3OIRA 1K32A 3K50A 3MOGA 5EUZA 5EUUA 2DXLA 1TIDB 4QTPA 4DMGA 4AE2A 5EUSA 1FC6A 3D03A 1T6RA 3JU4A 4L8KA 1N6DA 2KA5A 1FCFA 4HIZA 3LDFA 3GHFA 3GMFA 4DGHA 1TILB 1H4YA 1BUZA 4AEJA 1WXWA 4JC0A 3QDQA 3AGEA 3EH7A 3MGLA 3OIZA 1TH8B 4HYLA 3DUPA 2VY9A 1SBOA 2CWWA 1N6EA 3GVKA 1THNB 3LLOA 1V0FA 3IHAA 5EZBA 1H4XA 1HF2A 3V8VA 1V0EA 3AGDA 2ZO9B 3DORA 2DXNA 3GK7A 4XS5A 3F43A 3NY7A 1VC1A 1WXXA 3D3UA 2RRLA 3IF5A 3VSEA 3IHBA 1AUZA 5EUXA 2AS0A 3GVLA 2B78A 3IH8A 4GHNA 2OASA 3T6OA 4L1CA 1N6FA 4DGFA
chains in the Genus database with same CATH topology
5EUSA 3AGDA 5EUWA 4XS5A 3AGEA 3F43A 2KLNA 1T6RA 3NY7A 1VC1A 3MGLA 3OIZA 1TH8B 3IF5A 3ZXNA 2KA5A 4HYLA 3IHBA 3LKLA 1AUZA 5EUXA 3ZTBA 1H4ZA 2VY9A 3IH9A 1SBOA 3OIRA 4DGHA 3IH8A 1TILB 1H4YA 1THNB 3T6OA 1BUZA 3LLOA 5EUZA 5EUUA 3IHAA 4QTPA 1TIDB 5EZBA 4DGFA 1H4XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EUS A;  3AGD A;  5EUW A;  4XS5 A;  3AGE A;  3F43 A;  2KLN A;  1T6R A;  3NY7 A;  1VC1 A;  3MGL A;  3OIZ A;  1TH8 B;  3IF5 A;  3ZXN A;  2KA5 A;  4HYL A;  3IHB A;  3LKL A;  1AUZ A;  5EUX A;  3ZTB A;  1H4Z A;  2VY9 A;  3IH9 A;  1SBO A;  3OIR A;  4DGH A;  3IH8 A;  1TIL B;  1H4Y A;  1THN B;  3T6O A;  1BUZ A;  3LLO A;  5EUZ A;  5EUU A;  3IHA A;  4QTP A;  1TID B;  5EZB A;  4DGF A;  1H4X A; 
#chains in the Genus database with same CATH topology
 5EUW A;  1FC9 A;  3V97 A;  2KLN A;  1J7X A;  2ZOA A;  3ZXN A;  3C0K A;  3LKL A;  1BPL A;  1FC7 A;  3DJA A;  3ZTB A;  1H4Z A;  3GVJ A;  3IH9 A;  3OIR A;  1K32 A;  3K50 A;  3MOG A;  5EUZ A;  5EUU A;  2DXL A;  1TID B;  4QTP A;  4DMG A;  4AE2 A;  5EUS A;  1FC6 A;  3D03 A;  1T6R A;  3JU4 A;  4L8K A;  1N6D A;  2KA5 A;  1FCF A;  4HIZ A;  3LDF A;  3GHF A;  3GMF A;  4DGH A;  1TIL B;  1H4Y A;  1BUZ A;  4AEJ A;  1WXW A;  4JC0 A;  3QDQ A;  3AGE A;  3EH7 A;  3MGL A;  3OIZ A;  1TH8 B;  4HYL A;  3DUP A;  2VY9 A;  1SBO A;  2CWW A;  1N6E A;  3GVK A;  1THN B;  3LLO A;  1V0F A;  3IHA A;  5EZB A;  1H4X A;  1HF2 A;  3V8V A;  1V0E A;  3AGD A;  2ZO9 B;  3DOR A;  2DXN A;  3GK7 A;  4XS5 A;  3F43 A;  3NY7 A;  1VC1 A;  1WXX A;  3D3U A;  2RRL A;  3IF5 A;  3VSE A;  3IHB A;  1AUZ A;  5EUX A;  2AS0 A;  3GVL A;  2B78 A;  3IH8 A;  4GHN A;  2OAS A;  3T6O A;  4L1C A;  1N6F A;  4DGF A; 
#chains in the Genus database with same CATH homology
 5EUS A;  3AGD A;  5EUW A;  4XS5 A;  3AGE A;  3F43 A;  2KLN A;  1T6R A;  3NY7 A;  1VC1 A;  3MGL A;  3OIZ A;  1TH8 B;  3IF5 A;  3ZXN A;  2KA5 A;  4HYL A;  3IHB A;  3LKL A;  1AUZ A;  5EUX A;  3ZTB A;  1H4Z A;  2VY9 A;  3IH9 A;  1SBO A;  3OIR A;  4DGH A;  3IH8 A;  1TIL B;  1H4Y A;  1THN B;  3T6O A;  1BUZ A;  3LLO A;  5EUZ A;  5EUU A;  3IHA A;  4QTP A;  1TID B;  5EZB A;  4DGF A;  1H4X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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