3ZTB | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	114
structure length	113
Chain Sequence	RVPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKNL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling
source organism	Moorella thermoacetica
publication title	The Bacterial Stressosome: A Modular System that Has Been Adapted to Control Secondary Messenger Signaling. pubmed doi rcsb
molecule keywords	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN
total genus	30
structure length	113
sequence length	114
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-07-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	3ztbA00

3IHAA 3AGDA 1BUZA 5EUSA 3AGEA 3IHBA 1SBOA 4XS5A 4DGHA 1TIDB 1T6RA 5EUUA 1VC1A 4DGFA 5EUZA 1H4YA 1THNB 3NY7A 3F43A 3OIRA 3ZXNA 3OIZA 3LKLA 1TH8B 1AUZA 2KLNA 5EUXA 3IF5A 2KA5A 3LLOA 4QTPA 3IH9A 2VY9A 1H4ZA 3IH8A 4HYLA 5EUWA 3T6OA 3ZTBA 3MGLA 1TILB 1H4XA 5EZBA
chains in the Genus database with same CATH superfamily

1HF2A 3AGDA 3V8VA 3AGEA 3D03A 1N6DA 3IHBA 1WXWA 3V97A 3VSEA 3GVKA 1VC1A 1J7XA 1THNB 1V0FA 3ZXNA 3GVJA 3IF5A 3IH9A 3C0KA 4L1CA 3IH8A 4HYLA 3T6OA 5EUWA 3MGLA 4JC0A 1FC9A 3GK7A 3GVLA 3EH7A 3DJAA 3DUPA 3NY7A 3OIRA 3DORA 1TH8B 1AUZA 2KLNA 2CWWA 3QDQA 1TILB 4DMGA 3IHAA 1H4XA 2AS0A 2DXLA 1N6FA 1K32A 4AEJA 1FCFA 1TIDB 3K50A 1T6RA 4HIZA 5EUUA 1FC7A 5EUZA 3LDFA 5EUXA 2DXNA 4QTPA 1H4ZA 2RRLA 3JU4A 1BUZA 5EUSA 3D3UA 1FC6A 4AE2A 3GHFA 4DGHA 1SBOA 2OASA 4XS5A 1V0EA 2B78A 4DGFA 3MOGA 2ZO9B 3GMFA 1H4YA 3F43A 1N6EA 3OIZA 3LKLA 2KA5A 1WXXA 3LLOA 2ZOAA 1BPLA 2VY9A 3ZTBA 4L8KA 5EZBA 4GHNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3IHA A;  3AGD A;  1BUZ A;  5EUS A;  3AGE A;  3IHB A;  1SBO A;  4XS5 A;  4DGH A;  1TID B;  1T6R A;  5EUU A;  1VC1 A;  4DGF A;  5EUZ A;  1H4Y A;  1THN B;  3NY7 A;  3F43 A;  3OIR A;  3ZXN A;  3OIZ A;  3LKL A;  1TH8 B;  1AUZ A;  2KLN A;  5EUX A;  3IF5 A;  2KA5 A;  3LLO A;  4QTP A;  3IH9 A;  2VY9 A;  1H4Z A;  3IH8 A;  4HYL A;  5EUW A;  3T6O A;  3ZTB A;  3MGL A;  1TIL B;  1H4X A;  5EZB A; 
#chains in the Genus database with same CATH topology
 1HF2 A;  3AGD A;  3V8V A;  3AGE A;  3D03 A;  1N6D A;  3IHB A;  1WXW A;  3V97 A;  3VSE A;  3GVK A;  1VC1 A;  1J7X A;  1THN B;  1V0F A;  3ZXN A;  3GVJ A;  3IF5 A;  3IH9 A;  3C0K A;  4L1C A;  3IH8 A;  4HYL A;  3T6O A;  5EUW A;  3MGL A;  4JC0 A;  1FC9 A;  3GK7 A;  3GVL A;  3EH7 A;  3DJA A;  3DUP A;  3NY7 A;  3OIR A;  3DOR A;  1TH8 B;  1AUZ A;  2KLN A;  2CWW A;  3QDQ A;  1TIL B;  4DMG A;  3IHA A;  1H4X A;  2AS0 A;  2DXL A;  1N6F A;  1K32 A;  4AEJ A;  1FCF A;  1TID B;  3K50 A;  1T6R A;  4HIZ A;  5EUU A;  1FC7 A;  5EUZ A;  3LDF A;  5EUX A;  2DXN A;  4QTP A;  1H4Z A;  2RRL A;  3JU4 A;  1BUZ A;  5EUS A;  3D3U A;  1FC6 A;  4AE2 A;  3GHF A;  4DGH A;  1SBO A;  2OAS A;  4XS5 A;  1V0E A;  2B78 A;  4DGF A;  3MOG A;  2ZO9 B;  3GMF A;  1H4Y A;  3F43 A;  1N6E A;  3OIZ A;  3LKL A;  2KA5 A;  1WXX A;  3LLO A;  2ZOA A;  1BPL A;  2VY9 A;  3ZTB A;  4L8K A;  5EZB A;  4GHN A; 
#chains in the Genus database with same CATH homology
 3IHA A;  3AGD A;  1BUZ A;  5EUS A;  3AGE A;  3IHB A;  1SBO A;  4XS5 A;  4DGH A;  1TID B;  1T6R A;  5EUU A;  1VC1 A;  4DGF A;  5EUZ A;  1H4Y A;  1THN B;  3NY7 A;  3F43 A;  3OIR A;  3ZXN A;  3OIZ A;  3LKL A;  1TH8 B;  1AUZ A;  2KLN A;  5EUX A;  3IF5 A;  2KA5 A;  3LLO A;  4QTP A;  3IH9 A;  2VY9 A;  1H4Z A;  3IH8 A;  4HYL A;  5EUW A;  3T6O A;  3ZTB A;  3MGL A;  1TIL B;  1H4X A;  5EZB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZTBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations