3ZXN | Genus

Total Genus 36

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	118
structure length	117
Chain Sequence	SRVPILKVDDYWVVAIEETLDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKNLARM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Moorella thermoacetica
publication title	The Bacterial Stressosome: A Modular System that Has Been Adapted to Control Secondary Messenger Signaling. pubmed doi rcsb
molecule keywords	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN
total genus	36
structure length	117
sequence length	118
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-08-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	3zxnA00

3IHAA 3ZTBA 1H4XA 5EUUA 5EZBA 3ZXNA 1H4ZA 4HYLA 1THNB 1SBOA 5EUZA 1AUZA 3IH9A 5EUSA 4DGHA 3OIRA 1H4YA 1TH8B 2KA5A 3LLOA 5EUWA 3T6OA 1T6RA 4QTPA 1TIDB 3IH8A 3OIZA 5EUXA 3F43A 3NY7A 2KLNA 3AGEA 4DGFA 3AGDA 1TILB 2VY9A 3IHBA 4XS5A 1VC1A 3LKLA 1BUZA 3MGLA 3IF5A
chains in the Genus database with same CATH superfamily

1K32A 3GMFA 3ZTBA 1H4XA 5EUUA 1FC9A 1SBOA 5EUSA 3GK7A 4DGHA 1WXWA 1H4YA 3OIZA 1BPLA 2OASA 4DGFA 3AGDA 1V0EA 1J7XA 1TILB 1VC1A 3JU4A 1N6EA 1BUZA 3EH7A 4L8KA 3MOGA 1H4ZA 3VSEA 3QDQA 3DORA 3IH9A 2ZOAA 3OIRA 4HIZA 3DJAA 5EUWA 3GHFA 3GVLA 1TIDB 3C0KA 3F43A 2KLNA 4DMGA 2VY9A 3IHBA 2RRLA 3GVKA 4XS5A 3K50A 3IHAA 5EZBA 4HYLA 2AS0A 3DUPA 3LDFA 5EUZA 1AUZA 2ZO9B 3GVJA 3LLOA 3T6OA 4L1CA 1T6RA 4QTPA 3NY7A 2DXLA 2DXNA 1FC7A 1FC6A 1N6FA 3V8VA 3LKLA 4GHNA 3D03A 3ZXNA 4JC0A 1THNB 2B78A 1N6DA 2CWWA 1HF2A 1TH8B 2KA5A 3IH8A 4AEJA 3D3UA 5EUXA 3AGEA 1V0FA 3V97A 1WXXA 4AE2A 3MGLA 3IF5A 1FCFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3IHA A;  3ZTB A;  1H4X A;  5EUU A;  5EZB A;  3ZXN A;  1H4Z A;  4HYL A;  1THN B;  1SBO A;  5EUZ A;  1AUZ A;  3IH9 A;  5EUS A;  4DGH A;  3OIR A;  1H4Y A;  1TH8 B;  2KA5 A;  3LLO A;  5EUW A;  3T6O A;  1T6R A;  4QTP A;  1TID B;  3IH8 A;  3OIZ A;  5EUX A;  3F43 A;  3NY7 A;  2KLN A;  3AGE A;  4DGF A;  3AGD A;  1TIL B;  2VY9 A;  3IHB A;  4XS5 A;  1VC1 A;  3LKL A;  1BUZ A;  3MGL A;  3IF5 A; 
#chains in the Genus database with same CATH topology
 1K32 A;  3GMF A;  3ZTB A;  1H4X A;  5EUU A;  1FC9 A;  1SBO A;  5EUS A;  3GK7 A;  4DGH A;  1WXW A;  1H4Y A;  3OIZ A;  1BPL A;  2OAS A;  4DGF A;  3AGD A;  1V0E A;  1J7X A;  1TIL B;  1VC1 A;  3JU4 A;  1N6E A;  1BUZ A;  3EH7 A;  4L8K A;  3MOG A;  1H4Z A;  3VSE A;  3QDQ A;  3DOR A;  3IH9 A;  2ZOA A;  3OIR A;  4HIZ A;  3DJA A;  5EUW A;  3GHF A;  3GVL A;  1TID B;  3C0K A;  3F43 A;  2KLN A;  4DMG A;  2VY9 A;  3IHB A;  2RRL A;  3GVK A;  4XS5 A;  3K50 A;  3IHA A;  5EZB A;  4HYL A;  2AS0 A;  3DUP A;  3LDF A;  5EUZ A;  1AUZ A;  2ZO9 B;  3GVJ A;  3LLO A;  3T6O A;  4L1C A;  1T6R A;  4QTP A;  3NY7 A;  2DXL A;  2DXN A;  1FC7 A;  1FC6 A;  1N6F A;  3V8V A;  3LKL A;  4GHN A;  3D03 A;  3ZXN A;  4JC0 A;  1THN B;  2B78 A;  1N6D A;  2CWW A;  1HF2 A;  1TH8 B;  2KA5 A;  3IH8 A;  4AEJ A;  3D3U A;  5EUX A;  3AGE A;  1V0F A;  3V97 A;  1WXX A;  4AE2 A;  3MGL A;  3IF5 A;  1FCF A; 
#chains in the Genus database with same CATH homology
 3IHA A;  3ZTB A;  1H4X A;  5EUU A;  5EZB A;  3ZXN A;  1H4Z A;  4HYL A;  1THN B;  1SBO A;  5EUZ A;  1AUZ A;  3IH9 A;  5EUS A;  4DGH A;  3OIR A;  1H4Y A;  1TH8 B;  2KA5 A;  3LLO A;  5EUW A;  3T6O A;  1T6R A;  4QTP A;  1TID B;  3IH8 A;  3OIZ A;  5EUX A;  3F43 A;  3NY7 A;  2KLN A;  3AGE A;  4DGF A;  3AGD A;  1TIL B;  2VY9 A;  3IHB A;  4XS5 A;  1VC1 A;  3LKL A;  1BUZ A;  3MGL A;  3IF5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZXNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations