4DGFA

Structure of sulp transporter stas domain from wolinella succinogenes refined to 1.6 angstrom resolution
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
122
structure length
122
Chain Sequence
DDPDATSKKVVPLGVEIYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of SulP Transporter STAS Domain from Wolinella Succinogenes Refined to 1.6 Angstrom Resolution
rcsb
molecule tags Transport protein
source organism Wolinella succinogenes
molecule keywords SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN
total genus 38
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 4dgfA00
3OIRA 5EUXA 4QTPA 3IH9A 3IHAA 3IHBA 1SBOA 5EUSA 2KA5A 3MGLA 1VC1A 5EUUA 1AUZA 5EUZA 3IH8A 4HYLA 3ZTBA 1TH8B 1H4YA 1THNB 3ZXNA 1TIDB 1TILB 1H4ZA 3IF5A 4XS5A 3NY7A 5EUWA 3F43A 3LKLA 3T6OA 2KLNA 4DGFA 3LLOA 1T6RA 1H4XA 3OIZA 1BUZA 5EZBA 3AGEA 2VY9A 3AGDA 4DGHA
chains in the Genus database with same CATH superfamily
3OIRA 4QTPA 3V8VA 5EUSA 1K32A 1VC1A 3LDFA 4L8KA 5EUZA 2AS0A 3IH8A 4HYLA 2ZOAA 1H4YA 1THNB 4DMGA 1TIDB 1BPLA 3GK7A 3MOGA 3F43A 1FCFA 4DGFA 3GVKA 1H4XA 1BUZA 3AGEA 2VY9A 1V0FA 2KLNA 4GHNA 3IHAA 1SBOA 2RRLA 2ZO9B 3C0KA 1V0EA 5EUUA 1AUZA 3D03A 3ZTBA 2DXLA 1TILB 4XS5A 1J7XA 3LKLA 2OASA 4HIZA 3T6OA 3GHFA 3OIZA 5EZBA 3JU4A 3AGDA 2CWWA 3EH7A 4AE2A 5EUXA 3IHBA 2KA5A 3K50A 1WXXA 4L1CA 4AEJA 1FC7A 3DJAA 2DXNA 3QDQA 3NY7A 5EUWA 3GMFA 1FC9A 3MGLA 1FC6A 4DGHA 3IH9A 1HF2A 1WXWA 3V97A 1TH8B 1N6EA 3ZXNA 3IF5A 1H4ZA 1N6FA 1N6DA 3D3UA 2B78A 3VSEA 4JC0A 3GVJA 3LLOA 1T6RA 3DUPA 3DORA 3GVLA
chains in the Genus database with same CATH topology
3OIRA 5EUXA 4QTPA 3IH9A 3IHAA 3IHBA 1SBOA 5EUSA 2KA5A 3MGLA 1VC1A 5EUUA 1AUZA 5EUZA 3IH8A 4HYLA 3ZTBA 1TH8B 1H4YA 1THNB 3ZXNA 1TIDB 1TILB 1H4ZA 3IF5A 4XS5A 3NY7A 5EUWA 3F43A 3LKLA 3T6OA 2KLNA 4DGFA 3LLOA 1T6RA 1H4XA 3OIZA 1BUZA 5EZBA 3AGEA 2VY9A 3AGDA 4DGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIR A;  5EUX A;  4QTP A;  3IH9 A;  3IHA A;  3IHB A;  1SBO A;  5EUS A;  2KA5 A;  3MGL A;  1VC1 A;  5EUU A;  1AUZ A;  5EUZ A;  3IH8 A;  4HYL A;  3ZTB A;  1TH8 B;  1H4Y A;  1THN B;  3ZXN A;  1TID B;  1TIL B;  1H4Z A;  3IF5 A;  4XS5 A;  3NY7 A;  5EUW A;  3F43 A;  3LKL A;  3T6O A;  2KLN A;  4DGF A;  3LLO A;  1T6R A;  1H4X A;  3OIZ A;  1BUZ A;  5EZB A;  3AGE A;  2VY9 A;  3AGD A;  4DGH A; 
#chains in the Genus database with same CATH topology
 3OIR A;  4QTP A;  3V8V A;  5EUS A;  1K32 A;  1VC1 A;  3LDF A;  4L8K A;  5EUZ A;  2AS0 A;  3IH8 A;  4HYL A;  2ZOA A;  1H4Y A;  1THN B;  4DMG A;  1TID B;  1BPL A;  3GK7 A;  3MOG A;  3F43 A;  1FCF A;  4DGF A;  3GVK A;  1H4X A;  1BUZ A;  3AGE A;  2VY9 A;  1V0F A;  2KLN A;  4GHN A;  3IHA A;  1SBO A;  2RRL A;  2ZO9 B;  3C0K A;  1V0E A;  5EUU A;  1AUZ A;  3D03 A;  3ZTB A;  2DXL A;  1TIL B;  4XS5 A;  1J7X A;  3LKL A;  2OAS A;  4HIZ A;  3T6O A;  3GHF A;  3OIZ A;  5EZB A;  3JU4 A;  3AGD A;  2CWW A;  3EH7 A;  4AE2 A;  5EUX A;  3IHB A;  2KA5 A;  3K50 A;  1WXX A;  4L1C A;  4AEJ A;  1FC7 A;  3DJA A;  2DXN A;  3QDQ A;  3NY7 A;  5EUW A;  3GMF A;  1FC9 A;  3MGL A;  1FC6 A;  4DGH A;  3IH9 A;  1HF2 A;  1WXW A;  3V97 A;  1TH8 B;  1N6E A;  3ZXN A;  3IF5 A;  1H4Z A;  1N6F A;  1N6D A;  3D3U A;  2B78 A;  3VSE A;  4JC0 A;  3GVJ A;  3LLO A;  1T6R A;  3DUP A;  3DOR A;  3GVL A; 
#chains in the Genus database with same CATH homology
 3OIR A;  5EUX A;  4QTP A;  3IH9 A;  3IHA A;  3IHB A;  1SBO A;  5EUS A;  2KA5 A;  3MGL A;  1VC1 A;  5EUU A;  1AUZ A;  5EUZ A;  3IH8 A;  4HYL A;  3ZTB A;  1TH8 B;  1H4Y A;  1THN B;  3ZXN A;  1TID B;  1TIL B;  1H4Z A;  3IF5 A;  4XS5 A;  3NY7 A;  5EUW A;  3F43 A;  3LKL A;  3T6O A;  2KLN A;  4DGF A;  3LLO A;  1T6R A;  1H4X A;  3OIZ A;  1BUZ A;  5EZB A;  3AGE A;  2VY9 A;  3AGD A;  4DGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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