4DGF | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	122
structure length	122
Chain Sequence	DDPDATSKKVVPLGVEIYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVET

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 122 atoms

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transport protein
source organism	Wolinella succinogenes
publication title	Structure of SulP Transporter STAS Domain from Wolinella Succinogenes Refined to 1.6 Angstrom Resolution rcsb
molecule keywords	SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN
total genus	38
structure length	122
sequence length	122
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-01-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	4dgfA00

3IF5A 1T6RA 1TIDB 3T6OA 1SBOA 5EUZA 1TILB 1TH8B 3F43A 3AGEA 5EUXA 3OIZA 1H4YA 2KA5A 2VY9A 3IHBA 3ZXNA 2KLNA 5EUWA 3LLOA 1VC1A 1H4ZA 5EUUA 4QTPA 3LKLA 5EUSA 3IHAA 5EZBA 4DGFA 3IH9A 3AGDA 1BUZA 3NY7A 3ZTBA 4DGHA 4XS5A 1AUZA 1THNB 3OIRA 1H4XA 3MGLA 4HYLA 3IH8A
chains in the Genus database with same CATH superfamily

3LDFA 1T6RA 3DJAA 3EH7A 4AE2A 2ZOAA 3GMFA 4HIZA 5EUZA 1V0EA 1N6DA 2OASA 1WXWA 1FC9A 3GVLA 3GVKA 3DUPA 4DMGA 3AGDA 2DXNA 4XS5A 1AUZA 3OIRA 2RRLA 3V8VA 1FC7A 3MOGA 1TILB 4GHNA 3F43A 3GVJA 1H4YA 2ZO9B 1FCFA 4AEJA 3LLOA 1VC1A 1J7XA 1H4ZA 4QTPA 5EUUA 3D3UA 4L8KA 3IHAA 3IH9A 4DGHA 3ZTBA 3MGLA 2AS0A 3DORA 3T6OA 1BPLA 1K32A 3GHFA 5EUXA 1V0FA 2VY9A 3IHBA 3ZXNA 1FC6A 5EUWA 3LKLA 5EUSA 5EZBA 1WXXA 1N6FA 3NY7A 1N6EA 1THNB 4HYLA 1H4XA 3VSEA 3IF5A 1TIDB 1SBOA 1TH8B 3JU4A 3AGEA 3OIZA 3QDQA 2KA5A 2B78A 2KLNA 3GK7A 4JC0A 3V97A 1HF2A 3D03A 4DGFA 4L1CA 1BUZA 2DXLA 3K50A 2CWWA 3C0KA 3IH8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3IF5 A;  1T6R A;  1TID B;  3T6O A;  1SBO A;  5EUZ A;  1TIL B;  1TH8 B;  3F43 A;  3AGE A;  5EUX A;  3OIZ A;  1H4Y A;  2KA5 A;  2VY9 A;  3IHB A;  3ZXN A;  2KLN A;  5EUW A;  3LLO A;  1VC1 A;  1H4Z A;  5EUU A;  4QTP A;  3LKL A;  5EUS A;  3IHA A;  5EZB A;  4DGF A;  3IH9 A;  3AGD A;  1BUZ A;  3NY7 A;  3ZTB A;  4DGH A;  4XS5 A;  1AUZ A;  1THN B;  3OIR A;  1H4X A;  3MGL A;  4HYL A;  3IH8 A; 
#chains in the Genus database with same CATH topology
 3LDF A;  1T6R A;  3DJA A;  3EH7 A;  4AE2 A;  2ZOA A;  3GMF A;  4HIZ A;  5EUZ A;  1V0E A;  1N6D A;  2OAS A;  1WXW A;  1FC9 A;  3GVL A;  3GVK A;  3DUP A;  4DMG A;  3AGD A;  2DXN A;  4XS5 A;  1AUZ A;  3OIR A;  2RRL A;  3V8V A;  1FC7 A;  3MOG A;  1TIL B;  4GHN A;  3F43 A;  3GVJ A;  1H4Y A;  2ZO9 B;  1FCF A;  4AEJ A;  3LLO A;  1VC1 A;  1J7X A;  1H4Z A;  4QTP A;  5EUU A;  3D3U A;  4L8K A;  3IHA A;  3IH9 A;  4DGH A;  3ZTB A;  3MGL A;  2AS0 A;  3DOR A;  3T6O A;  1BPL A;  1K32 A;  3GHF A;  5EUX A;  1V0F A;  2VY9 A;  3IHB A;  3ZXN A;  1FC6 A;  5EUW A;  3LKL A;  5EUS A;  5EZB A;  1WXX A;  1N6F A;  3NY7 A;  1N6E A;  1THN B;  4HYL A;  1H4X A;  3VSE A;  3IF5 A;  1TID B;  1SBO A;  1TH8 B;  3JU4 A;  3AGE A;  3OIZ A;  3QDQ A;  2KA5 A;  2B78 A;  2KLN A;  3GK7 A;  4JC0 A;  3V97 A;  1HF2 A;  3D03 A;  4DGF A;  4L1C A;  1BUZ A;  2DXL A;  3K50 A;  2CWW A;  3C0K A;  3IH8 A; 
#chains in the Genus database with same CATH homology
 3IF5 A;  1T6R A;  1TID B;  3T6O A;  1SBO A;  5EUZ A;  1TIL B;  1TH8 B;  3F43 A;  3AGE A;  5EUX A;  3OIZ A;  1H4Y A;  2KA5 A;  2VY9 A;  3IHB A;  3ZXN A;  2KLN A;  5EUW A;  3LLO A;  1VC1 A;  1H4Z A;  5EUU A;  4QTP A;  3LKL A;  5EUS A;  3IHA A;  5EZB A;  4DGF A;  3IH9 A;  3AGD A;  1BUZ A;  3NY7 A;  3ZTB A;  4DGH A;  4XS5 A;  1AUZ A;  1THN B;  3OIR A;  1H4X A;  3MGL A;  4HYL A;  3IH8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DGFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations