4DGFA

Structure of sulp transporter stas domain from wolinella succinogenes refined to 1.6 angstrom resolution
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
122
structure length
122
Chain Sequence
DDPDATSKKVVPLGVEIYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of SulP Transporter STAS Domain from Wolinella Succinogenes Refined to 1.6 Angstrom Resolution
rcsb
molecule tags Transport protein
source organism Wolinella succinogenes
molecule keywords SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN
total genus 38
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 4dgfA00
3IH8A 4DGHA 1THNB 2KA5A 2VY9A 1SBOA 3OIRA 1H4XA 1T6RA 1TIDB 1TILB 4DGFA 5EUWA 3NY7A 3IHBA 1TH8B 5EUUA 3AGDA 3IHAA 3MGLA 1H4ZA 3OIZA 4QTPA 5EUXA 3ZTBA 3AGEA 3T6OA 4XS5A 3IF5A 3F43A 1BUZA 3IH9A 1AUZA 3LKLA 4HYLA 3LLOA 2KLNA 5EUSA 1H4YA 5EZBA 3ZXNA 1VC1A 5EUZA
chains in the Genus database with same CATH superfamily
1K32A 3IH8A 4DGHA 1J7XA 1FC7A 1TILB 3V97A 1FCFA 3NY7A 2OASA 4AE2A 1BPLA 2ZO9B 3F43A 3VSEA 3EH7A 1AUZA 3LKLA 4JC0A 1V0EA 3QDQA 3ZXNA 4DMGA 4GHNA 3C0KA 1HF2A 3D03A 1THNB 1N6DA 2VY9A 2ZOAA 1H4XA 1T6RA 1TIDB 3K50A 2AS0A 1FC9A 2DXLA 3GVLA 4L8KA 3DORA 3AGDA 1H4ZA 4QTPA 4XS5A 3IF5A 1N6EA 4HIZA 5EUSA 1H4YA 1VC1A 5EUZA 1N6FA 3DUPA 3MOGA 2KA5A 3OIRA 4AEJA 4DGFA 5EUWA 3IHBA 3IHAA 3MGLA 1FC6A 3ZTBA 3AGEA 1BUZA 3IH9A 4HYLA 5EZBA 3GHFA 3LDFA 3GVJA 4L1CA 3V8VA 1SBOA 1V0FA 1WXXA 3JU4A 1TH8B 5EUUA 1WXWA 3OIZA 5EUXA 3GVKA 3T6OA 3GMFA 3LLOA 2KLNA 3GK7A 3D3UA 2CWWA 2DXNA 2B78A 3DJAA 2RRLA
chains in the Genus database with same CATH topology
3IH8A 4DGHA 1THNB 2KA5A 2VY9A 1SBOA 3OIRA 1H4XA 1T6RA 1TIDB 1TILB 4DGFA 5EUWA 3NY7A 3IHBA 1TH8B 5EUUA 3AGDA 3IHAA 3MGLA 1H4ZA 3OIZA 4QTPA 5EUXA 3ZTBA 3AGEA 3T6OA 4XS5A 3IF5A 3F43A 1BUZA 3IH9A 1AUZA 3LKLA 4HYLA 3LLOA 2KLNA 5EUSA 1H4YA 5EZBA 3ZXNA 1VC1A 5EUZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IH8 A;  4DGH A;  1THN B;  2KA5 A;  2VY9 A;  1SBO A;  3OIR A;  1H4X A;  1T6R A;  1TID B;  1TIL B;  4DGF A;  5EUW A;  3NY7 A;  3IHB A;  1TH8 B;  5EUU A;  3AGD A;  3IHA A;  3MGL A;  1H4Z A;  3OIZ A;  4QTP A;  5EUX A;  3ZTB A;  3AGE A;  3T6O A;  4XS5 A;  3IF5 A;  3F43 A;  1BUZ A;  3IH9 A;  1AUZ A;  3LKL A;  4HYL A;  3LLO A;  2KLN A;  5EUS A;  1H4Y A;  5EZB A;  3ZXN A;  1VC1 A;  5EUZ A; 
#chains in the Genus database with same CATH topology
 1K32 A;  3IH8 A;  4DGH A;  1J7X A;  1FC7 A;  1TIL B;  3V97 A;  1FCF A;  3NY7 A;  2OAS A;  4AE2 A;  1BPL A;  2ZO9 B;  3F43 A;  3VSE A;  3EH7 A;  1AUZ A;  3LKL A;  4JC0 A;  1V0E A;  3QDQ A;  3ZXN A;  4DMG A;  4GHN A;  3C0K A;  1HF2 A;  3D03 A;  1THN B;  1N6D A;  2VY9 A;  2ZOA A;  1H4X A;  1T6R A;  1TID B;  3K50 A;  2AS0 A;  1FC9 A;  2DXL A;  3GVL A;  4L8K A;  3DOR A;  3AGD A;  1H4Z A;  4QTP A;  4XS5 A;  3IF5 A;  1N6E A;  4HIZ A;  5EUS A;  1H4Y A;  1VC1 A;  5EUZ A;  1N6F A;  3DUP A;  3MOG A;  2KA5 A;  3OIR A;  4AEJ A;  4DGF A;  5EUW A;  3IHB A;  3IHA A;  3MGL A;  1FC6 A;  3ZTB A;  3AGE A;  1BUZ A;  3IH9 A;  4HYL A;  5EZB A;  3GHF A;  3LDF A;  3GVJ A;  4L1C A;  3V8V A;  1SBO A;  1V0F A;  1WXX A;  3JU4 A;  1TH8 B;  5EUU A;  1WXW A;  3OIZ A;  5EUX A;  3GVK A;  3T6O A;  3GMF A;  3LLO A;  2KLN A;  3GK7 A;  3D3U A;  2CWW A;  2DXN A;  2B78 A;  3DJA A;  2RRL A; 
#chains in the Genus database with same CATH homology
 3IH8 A;  4DGH A;  1THN B;  2KA5 A;  2VY9 A;  1SBO A;  3OIR A;  1H4X A;  1T6R A;  1TID B;  1TIL B;  4DGF A;  5EUW A;  3NY7 A;  3IHB A;  1TH8 B;  5EUU A;  3AGD A;  3IHA A;  3MGL A;  1H4Z A;  3OIZ A;  4QTP A;  5EUX A;  3ZTB A;  3AGE A;  3T6O A;  4XS5 A;  3IF5 A;  3F43 A;  1BUZ A;  3IH9 A;  1AUZ A;  3LKL A;  4HYL A;  3LLO A;  2KLN A;  5EUS A;  1H4Y A;  5EZB A;  3ZXN A;  1VC1 A;  5EUZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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