4DGH | Genus

Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	128
structure length	128
Chain Sequence	NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 128 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transport protein
source organism	Vibrio cholerae
publication title	Structure of SulP Transporter STAS Domain from Vibrio Cholerae Refined to 1.9 Angstrom Resolution rcsb
molecule keywords	Sulfate permease family protein
total genus	41
structure length	128
sequence length	128
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-01-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	4dghA00

3ZTBA 3IHAA 5EUSA 3OIZA 4HYLA 1BUZA 5EUWA 1THNB 3MGLA 3LKLA 4DGHA 4XS5A 3LLOA 1AUZA 1TH8B 3AGEA 3IF5A 1H4XA 1H4ZA 5EUXA 5EUZA 5EZBA 3IH8A 3F43A 3NY7A 3IH9A 1SBOA 5EUUA 3OIRA 1VC1A 3AGDA 3T6OA 2VY9A 3IHBA 2KA5A 4QTPA 2KLNA 4DGFA 1T6RA 1H4YA 1TIDB 1TILB 3ZXNA
chains in the Genus database with same CATH superfamily

4JC0A 3OIZA 1FCFA 3C0KA 3QDQA 4XS5A 1AUZA 1TH8B 3AGEA 1K32A 3IF5A 3IH9A 1SBOA 1FC9A 2DXNA 2B78A 3GMFA 3T6OA 3GHFA 3IHBA 1WXWA 4HIZA 2KA5A 1H4YA 2CWWA 3ZXNA 3DORA 5EUSA 3GVJA 3DUPA 1N6FA 3LKLA 4DGHA 2ZO9B 4AE2A 3V97A 3V8VA 3VSEA 3DJAA 3LDFA 4AEJA 3NY7A 3D3UA 1FC6A 1VC1A 1N6EA 2AS0A 4QTPA 2KLNA 3JU4A 3K50A 1TILB 4DMGA 3D03A 1HF2A 1BUZA 5EUWA 3MGLA 4L8KA 1BPLA 1H4XA 1V0FA 1N6DA 5EUXA 2RRLA 3EH7A 1J7XA 3F43A 1V0EA 3OIRA 3MOGA 2OASA 4DGFA 2DXLA 3ZTBA 3IHAA 4GHNA 1WXXA 4HYLA 1THNB 1FC7A 3LLOA 1H4ZA 5EUZA 5EZBA 2ZOAA 3IH8A 4L1CA 5EUUA 3AGDA 3GK7A 3GVKA 3GVLA 2VY9A 1T6RA 1TIDB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZTB A;  3IHA A;  5EUS A;  3OIZ A;  4HYL A;  1BUZ A;  5EUW A;  1THN B;  3MGL A;  3LKL A;  4DGH A;  4XS5 A;  3LLO A;  1AUZ A;  1TH8 B;  3AGE A;  3IF5 A;  1H4X A;  1H4Z A;  5EUX A;  5EUZ A;  5EZB A;  3IH8 A;  3F43 A;  3NY7 A;  3IH9 A;  1SBO A;  5EUU A;  3OIR A;  1VC1 A;  3AGD A;  3T6O A;  2VY9 A;  3IHB A;  2KA5 A;  4QTP A;  2KLN A;  4DGF A;  1T6R A;  1H4Y A;  1TID B;  1TIL B;  3ZXN A; 
#chains in the Genus database with same CATH topology
 4JC0 A;  3OIZ A;  1FCF A;  3C0K A;  3QDQ A;  4XS5 A;  1AUZ A;  1TH8 B;  3AGE A;  1K32 A;  3IF5 A;  3IH9 A;  1SBO A;  1FC9 A;  2DXN A;  2B78 A;  3GMF A;  3T6O A;  3GHF A;  3IHB A;  1WXW A;  4HIZ A;  2KA5 A;  1H4Y A;  2CWW A;  3ZXN A;  3DOR A;  5EUS A;  3GVJ A;  3DUP A;  1N6F A;  3LKL A;  4DGH A;  2ZO9 B;  4AE2 A;  3V97 A;  3V8V A;  3VSE A;  3DJA A;  3LDF A;  4AEJ A;  3NY7 A;  3D3U A;  1FC6 A;  1VC1 A;  1N6E A;  2AS0 A;  4QTP A;  2KLN A;  3JU4 A;  3K50 A;  1TIL B;  4DMG A;  3D03 A;  1HF2 A;  1BUZ A;  5EUW A;  3MGL A;  4L8K A;  1BPL A;  1H4X A;  1V0F A;  1N6D A;  5EUX A;  2RRL A;  3EH7 A;  1J7X A;  3F43 A;  1V0E A;  3OIR A;  3MOG A;  2OAS A;  4DGF A;  2DXL A;  3ZTB A;  3IHA A;  4GHN A;  1WXX A;  4HYL A;  1THN B;  1FC7 A;  3LLO A;  1H4Z A;  5EUZ A;  5EZB A;  2ZOA A;  3IH8 A;  4L1C A;  5EUU A;  3AGD A;  3GK7 A;  3GVK A;  3GVL A;  2VY9 A;  1T6R A;  1TID B; 
#chains in the Genus database with same CATH homology
 3ZTB A;  3IHA A;  5EUS A;  3OIZ A;  4HYL A;  1BUZ A;  5EUW A;  1THN B;  3MGL A;  3LKL A;  4DGH A;  4XS5 A;  3LLO A;  1AUZ A;  1TH8 B;  3AGE A;  3IF5 A;  1H4X A;  1H4Z A;  5EUX A;  5EUZ A;  5EZB A;  3IH8 A;  3F43 A;  3NY7 A;  3IH9 A;  1SBO A;  5EUU A;  3OIR A;  1VC1 A;  3AGD A;  3T6O A;  2VY9 A;  3IHB A;  2KA5 A;  4QTP A;  2KLN A;  4DGF A;  1T6R A;  1H4Y A;  1TID B;  1TIL B;  3ZXN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DGHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations