4HYL | Genus

Total Genus 28

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	113
structure length	113
Chain Sequence	NATDTQIRTEQGIDIITLHGHLDTRSSPAVQAAVLPRVTAKGKMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVGVSEEIRDTMEITGFWNFFTACASMDEALRILGS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription regulator
source organism	Haliangium ochraceum
publication title	The crystal structure of an anti-sigma-factor antagonist from Haliangium ochraceum DSM 14365 rcsb
molecule keywords	Stage II sporulation protein
total genus	28
structure length	113
sequence length	113
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-11-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	4hylA00

5EUWA 1H4YA 3IHAA 3OIZA 3IHBA 4HYLA 1T6RA 4DGHA 3MGLA 3IH9A 3IF5A 2VY9A 3LLOA 1TILB 1THNB 1H4ZA 4XS5A 3AGDA 3IH8A 3NY7A 5EUSA 4DGFA 1VC1A 2KA5A 3F43A 3AGEA 1TH8B 1TIDB 1SBOA 1H4XA 1AUZA 5EUUA 3ZTBA 4QTPA 2KLNA 3T6OA 1BUZA 3LKLA 3OIRA 3ZXNA 5EUXA 5EZBA 5EUZA
chains in the Genus database with same CATH superfamily

4L1CA 3GHFA 3IH9A 1V0FA 3DUPA 2VY9A 2B78A 3GMFA 2CWWA 4XS5A 1VC1A 1BPLA 2DXNA 3VSEA 1H4XA 1SBOA 5EUUA 3GVJA 3T6OA 3D3UA 3LDFA 3D03A 4AE2A 3GK7A 4L8KA 1K32A 3JU4A 3IHAA 2DXLA 4HIZA 1T6RA 3V97A 4DGHA 4JC0A 3LLOA 1FCFA 1H4ZA 1THNB 5EUSA 4DGFA 2KA5A 3C0KA 2ZOAA 1AUZA 3ZTBA 1N6FA 2KLNA 1FC6A 1BUZA 1N6DA 3OIRA 1J7XA 4GHNA 3ZXNA 5EUXA 5EZBA 2OASA 5EUZA 3GVKA 5EUWA 1HF2A 2RRLA 1WXXA 3IHBA 3MGLA 1FC7A 3IF5A 3K50A 2AS0A 3EH7A 3AGDA 3IH8A 3NY7A 3QDQA 3F43A 2ZO9B 3AGEA 1TIDB 1N6EA 1WXWA 1FC9A 3DORA 1H4YA 3OIZA 4HYLA 3GVLA 3MOGA 3V8VA 1TILB 4DMGA 1TH8B 4AEJA 4QTPA 1V0EA 3DJAA 3LKLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5EUW A;  1H4Y A;  3IHA A;  3OIZ A;  3IHB A;  4HYL A;  1T6R A;  4DGH A;  3MGL A;  3IH9 A;  3IF5 A;  2VY9 A;  3LLO A;  1TIL B;  1THN B;  1H4Z A;  4XS5 A;  3AGD A;  3IH8 A;  3NY7 A;  5EUS A;  4DGF A;  1VC1 A;  2KA5 A;  3F43 A;  3AGE A;  1TH8 B;  1TID B;  1SBO A;  1H4X A;  1AUZ A;  5EUU A;  3ZTB A;  4QTP A;  2KLN A;  3T6O A;  1BUZ A;  3LKL A;  3OIR A;  3ZXN A;  5EUX A;  5EZB A;  5EUZ A; 
#chains in the Genus database with same CATH topology
 4L1C A;  3GHF A;  3IH9 A;  1V0F A;  3DUP A;  2VY9 A;  2B78 A;  3GMF A;  2CWW A;  4XS5 A;  1VC1 A;  1BPL A;  2DXN A;  3VSE A;  1H4X A;  1SBO A;  5EUU A;  3GVJ A;  3T6O A;  3D3U A;  3LDF A;  3D03 A;  4AE2 A;  3GK7 A;  4L8K A;  1K32 A;  3JU4 A;  3IHA A;  2DXL A;  4HIZ A;  1T6R A;  3V97 A;  4DGH A;  4JC0 A;  3LLO A;  1FCF A;  1H4Z A;  1THN B;  5EUS A;  4DGF A;  2KA5 A;  3C0K A;  2ZOA A;  1AUZ A;  3ZTB A;  1N6F A;  2KLN A;  1FC6 A;  1BUZ A;  1N6D A;  3OIR A;  1J7X A;  4GHN A;  3ZXN A;  5EUX A;  5EZB A;  2OAS A;  5EUZ A;  3GVK A;  5EUW A;  1HF2 A;  2RRL A;  1WXX A;  3IHB A;  3MGL A;  1FC7 A;  3IF5 A;  3K50 A;  2AS0 A;  3EH7 A;  3AGD A;  3IH8 A;  3NY7 A;  3QDQ A;  3F43 A;  2ZO9 B;  3AGE A;  1TID B;  1N6E A;  1WXW A;  1FC9 A;  3DOR A;  1H4Y A;  3OIZ A;  4HYL A;  3GVL A;  3MOG A;  3V8V A;  1TIL B;  4DMG A;  1TH8 B;  4AEJ A;  4QTP A;  1V0E A;  3DJA A;  3LKL A; 
#chains in the Genus database with same CATH homology
 5EUW A;  1H4Y A;  3IHA A;  3OIZ A;  3IHB A;  4HYL A;  1T6R A;  4DGH A;  3MGL A;  3IH9 A;  3IF5 A;  2VY9 A;  3LLO A;  1TIL B;  1THN B;  1H4Z A;  4XS5 A;  3AGD A;  3IH8 A;  3NY7 A;  5EUS A;  4DGF A;  1VC1 A;  2KA5 A;  3F43 A;  3AGE A;  1TH8 B;  1TID B;  1SBO A;  1H4X A;  1AUZ A;  5EUU A;  3ZTB A;  4QTP A;  2KLN A;  3T6O A;  1BUZ A;  3LKL A;  3OIR A;  3ZXN A;  5EUX A;  5EZB A;  5EUZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4HYLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations