4QTPA

Crystal structure of an anti-sigma factor antagonist from mycobacterium paratuberculosis
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
116
structure length
116
Chain Sequence
SAPDSITTLVEDHDGVSVVSVSGEIDMVTAPALEQAIGAVVADSPPALVIDLSAVEFLGSVGLKILAATYEKLGKETGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (3-6)S2 (17-26)AH4 (108-116)S1 (7-14)TIV3 (46-49)AH1 (30-44)TI1 (27-30)TI3 (75-78)S3 (48-52)AH2 (61-73)S5 (79-83)AH3 (87-96)3H1 (98-100)TIV2 (13-16)TI2 (53-56)S4 (56-59)S6 (104-105)Updating...
connected with : NaN
molecule tags Protein binding
source organism Mycobacterium avium subsp. paratuberculosis
publication title Crystal Structure of an Anti-sigma Factor Antagonist from Mycobacterium paratuberculosis
rcsb
molecule keywords Anti-sigma factor antagonist
total genus 35
structure length 116
sequence length 116
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 4qtpA00
5EUWA 3AGEA 1H4XA 4DGFA 3IH8A 1THNB 1VC1A 4XS5A 3ZTBA 1TIDB 3MGLA 4HYLA 5EZBA 3NY7A 1AUZA 2VY9A 1SBOA 3T6OA 2KLNA 3LLOA 3F43A 1H4ZA 5EUXA 5EUUA 2KA5A 3IHBA 3OIRA 1T6RA 3OIZA 3IH9A 5EUSA 1H4YA 3LKLA 4DGHA 1TH8B 3ZXNA 3IHAA 3AGDA 4QTPA 1TILB 3IF5A 1BUZA 5EUZA
chains in the Genus database with same CATH superfamily
1V0FA 2B78A 1H4XA 4XS5A 3GVKA 3MGLA 2AS0A 5EZBA 3NY7A 1WXXA 1FC6A 4AE2A 3IHBA 4GHNA 3GVLA 1H4YA 3MOGA 3IHAA 1HF2A 3QDQA 2OASA 5EUZA 1BPLA 1WXWA 3IH8A 3DORA 1FC9A 1THNB 3V8VA 1TIDB 3ZTBA 3T6OA 3F43A 2ZOAA 1N6FA 2RRLA 1T6RA 4JC0A 1N6EA 3DUPA 5EUSA 1N6DA 4DGHA 1TH8B 3DJAA 3D3UA 1TILB 3V97A 1BUZA 4AEJA 5EUWA 3AGEA 4DGFA 3JU4A 4HYLA 1AUZA 1SBOA 3D03A 3LDFA 2KLNA 3LLOA 1K32A 1H4ZA 5EUXA 3GK7A 2KA5A 3OIRA 3OIZA 3K50A 4L1CA 4QTPA 2ZO9B 3GMFA 3GVJA 4DMGA 4HIZA 1VC1A 1J7XA 1FC7A 3VSEA 2VY9A 3C0KA 2DXNA 3EH7A 5EUUA 3GHFA 3IH9A 3LKLA 1V0EA 2DXLA 4L8KA 3ZXNA 3AGDA 3IF5A 1FCFA 2CWWA
chains in the Genus database with same CATH topology
5EUWA 3AGEA 1H4XA 4DGFA 3IH8A 1THNB 1VC1A 4XS5A 3ZTBA 1TIDB 3MGLA 4HYLA 5EZBA 3NY7A 1AUZA 2VY9A 1SBOA 3T6OA 2KLNA 3LLOA 3F43A 1H4ZA 5EUXA 5EUUA 2KA5A 3IHBA 3OIRA 1T6RA 3OIZA 3IH9A 5EUSA 1H4YA 3LKLA 4DGHA 1TH8B 3ZXNA 3IHAA 3AGDA 4QTPA 1TILB 3IF5A 1BUZA 5EUZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EUW A;  3AGE A;  1H4X A;  4DGF A;  3IH8 A;  1THN B;  1VC1 A;  4XS5 A;  3ZTB A;  1TID B;  3MGL A;  4HYL A;  5EZB A;  3NY7 A;  1AUZ A;  2VY9 A;  1SBO A;  3T6O A;  2KLN A;  3LLO A;  3F43 A;  1H4Z A;  5EUX A;  5EUU A;  2KA5 A;  3IHB A;  3OIR A;  1T6R A;  3OIZ A;  3IH9 A;  5EUS A;  1H4Y A;  3LKL A;  4DGH A;  1TH8 B;  3ZXN A;  3IHA A;  3AGD A;  4QTP A;  1TIL B;  3IF5 A;  1BUZ A;  5EUZ A; 
#chains in the Genus database with same CATH topology
 1V0F A;  2B78 A;  1H4X A;  4XS5 A;  3GVK A;  3MGL A;  2AS0 A;  5EZB A;  3NY7 A;  1WXX A;  1FC6 A;  4AE2 A;  3IHB A;  4GHN A;  3GVL A;  1H4Y A;  3MOG A;  3IHA A;  1HF2 A;  3QDQ A;  2OAS A;  5EUZ A;  1BPL A;  1WXW A;  3IH8 A;  3DOR A;  1FC9 A;  1THN B;  3V8V A;  1TID B;  3ZTB A;  3T6O A;  3F43 A;  2ZOA A;  1N6F A;  2RRL A;  1T6R A;  4JC0 A;  1N6E A;  3DUP A;  5EUS A;  1N6D A;  4DGH A;  1TH8 B;  3DJA A;  3D3U A;  1TIL B;  3V97 A;  1BUZ A;  4AEJ A;  5EUW A;  3AGE A;  4DGF A;  3JU4 A;  4HYL A;  1AUZ A;  1SBO A;  3D03 A;  3LDF A;  2KLN A;  3LLO A;  1K32 A;  1H4Z A;  5EUX A;  3GK7 A;  2KA5 A;  3OIR A;  3OIZ A;  3K50 A;  4L1C A;  4QTP A;  2ZO9 B;  3GMF A;  3GVJ A;  4DMG A;  4HIZ A;  1VC1 A;  1J7X A;  1FC7 A;  3VSE A;  2VY9 A;  3C0K A;  2DXN A;  3EH7 A;  5EUU A;  3GHF A;  3IH9 A;  3LKL A;  1V0E A;  2DXL A;  4L8K A;  3ZXN A;  3AGD A;  3IF5 A;  1FCF A;  2CWW A; 
#chains in the Genus database with same CATH homology
 5EUW A;  3AGE A;  1H4X A;  4DGF A;  3IH8 A;  1THN B;  1VC1 A;  4XS5 A;  3ZTB A;  1TID B;  3MGL A;  4HYL A;  5EZB A;  3NY7 A;  1AUZ A;  2VY9 A;  1SBO A;  3T6O A;  2KLN A;  3LLO A;  3F43 A;  1H4Z A;  5EUX A;  5EUU A;  2KA5 A;  3IHB A;  3OIR A;  1T6R A;  3OIZ A;  3IH9 A;  5EUS A;  1H4Y A;  3LKL A;  4DGH A;  1TH8 B;  3ZXN A;  3IHA A;  3AGD A;  4QTP A;  1TIL B;  3IF5 A;  1BUZ A;  5EUZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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