4XS5 | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	119
structure length	119
Chain Sequence	DFKLEKKEQYVYIETDAPAFAGDVPAAFEETARSLFREGYHSLIVNMQTVKSLDATGITTLKKVNYLCANDLGMLAIVTRDDDFIDLLEDLRIPDLTVLPTKEEAIDAVFMHSLENEFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 119 atoms

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119 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Dyadobacter fermentans (strain atcc 700827 / dsm 18053 / ns114)
publication title	Crystal structure of Sulfate transporter/antisigma-factor antagonist STAS from Dyadobacter fermentans DSM 18053 rcsb
molecule keywords	Sulfate transporter/antisigma-factor antagonist STAS
total genus	38
structure length	119
sequence length	119
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2015-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	4xs5A00

2KA5A 3F43A 3OIZA 1THNB 3IF5A 2KLNA 4DGFA 3OIRA 3AGEA 3T6OA 1H4XA 3IH8A 5EZBA 1BUZA 1TILB 3MGLA 5EUZA 2VY9A 3ZTBA 1H4ZA 5EUWA 1T6RA 3AGDA 3NY7A 5EUUA 5EUSA 1TIDB 4XS5A 1SBOA 5EUXA 1TH8B 3IHAA 3LKLA 3IHBA 1VC1A 4DGHA 3LLOA 3ZXNA 1H4YA 1AUZA 4HYLA 4QTPA 3IH9A
chains in the Genus database with same CATH superfamily

1N6EA 3F43A 1THNB 3EH7A 3JU4A 2CWWA 4AEJA 1WXWA 2DXLA 4AE2A 1H4XA 2VY9A 1T6RA 4L8KA 5EUSA 4XS5A 1SBOA 2RRLA 3IHBA 3ZXNA 1AUZA 4HIZA 4HYLA 4DGHA 3OIZA 3GVJA 3GVLA 2KLNA 4DGFA 3GK7A 3IH8A 5EZBA 1TILB 5EUZA 1N6DA 5EUWA 3C0KA 3MOGA 3NY7A 3K50A 1TIDB 3VSEA 3LKLA 1VC1A 1HF2A 3IH9A 1K32A 3IF5A 3D3UA 1N6FA 2AS0A 4L1CA 3AGEA 3T6OA 1FC6A 3V97A 4DMGA 1BUZA 3ZTBA 1H4ZA 1FCFA 1V0FA 2ZOAA 3AGDA 2ZO9B 3DJAA 5EUXA 1FC7A 1TH8B 3IHAA 1J7XA 3LLOA 4GHNA 3GVKA 1BPLA 4QTPA 1V0EA 2KA5A 2DXNA 3OIRA 3D03A 3QDQA 4JC0A 3MGLA 2B78A 3DORA 2OASA 5EUUA 3V8VA 3LDFA 1FC9A 3GHFA 1H4YA 3DUPA 1WXXA 3GMFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2KA5 A;  3F43 A;  3OIZ A;  1THN B;  3IF5 A;  2KLN A;  4DGF A;  3OIR A;  3AGE A;  3T6O A;  1H4X A;  3IH8 A;  5EZB A;  1BUZ A;  1TIL B;  3MGL A;  5EUZ A;  2VY9 A;  3ZTB A;  1H4Z A;  5EUW A;  1T6R A;  3AGD A;  3NY7 A;  5EUU A;  5EUS A;  1TID B;  4XS5 A;  1SBO A;  5EUX A;  1TH8 B;  3IHA A;  3LKL A;  3IHB A;  1VC1 A;  4DGH A;  3LLO A;  3ZXN A;  1H4Y A;  1AUZ A;  4HYL A;  4QTP A;  3IH9 A; 
#chains in the Genus database with same CATH topology
 1N6E A;  3F43 A;  1THN B;  3EH7 A;  3JU4 A;  2CWW A;  4AEJ A;  1WXW A;  2DXL A;  4AE2 A;  1H4X A;  2VY9 A;  1T6R A;  4L8K A;  5EUS A;  4XS5 A;  1SBO A;  2RRL A;  3IHB A;  3ZXN A;  1AUZ A;  4HIZ A;  4HYL A;  4DGH A;  3OIZ A;  3GVJ A;  3GVL A;  2KLN A;  4DGF A;  3GK7 A;  3IH8 A;  5EZB A;  1TIL B;  5EUZ A;  1N6D A;  5EUW A;  3C0K A;  3MOG A;  3NY7 A;  3K50 A;  1TID B;  3VSE A;  3LKL A;  1VC1 A;  1HF2 A;  3IH9 A;  1K32 A;  3IF5 A;  3D3U A;  1N6F A;  2AS0 A;  4L1C A;  3AGE A;  3T6O A;  1FC6 A;  3V97 A;  4DMG A;  1BUZ A;  3ZTB A;  1H4Z A;  1FCF A;  1V0F A;  2ZOA A;  3AGD A;  2ZO9 B;  3DJA A;  5EUX A;  1FC7 A;  1TH8 B;  3IHA A;  1J7X A;  3LLO A;  4GHN A;  3GVK A;  1BPL A;  4QTP A;  1V0E A;  2KA5 A;  2DXN A;  3OIR A;  3D03 A;  3QDQ A;  4JC0 A;  3MGL A;  2B78 A;  3DOR A;  2OAS A;  5EUU A;  3V8V A;  3LDF A;  1FC9 A;  3GHF A;  1H4Y A;  3DUP A;  1WXX A;  3GMF A; 
#chains in the Genus database with same CATH homology
 2KA5 A;  3F43 A;  3OIZ A;  1THN B;  3IF5 A;  2KLN A;  4DGF A;  3OIR A;  3AGE A;  3T6O A;  1H4X A;  3IH8 A;  5EZB A;  1BUZ A;  1TIL B;  3MGL A;  5EUZ A;  2VY9 A;  3ZTB A;  1H4Z A;  5EUW A;  1T6R A;  3AGD A;  3NY7 A;  5EUU A;  5EUS A;  1TID B;  4XS5 A;  1SBO A;  5EUX A;  1TH8 B;  3IHA A;  3LKL A;  3IHB A;  1VC1 A;  4DGH A;  3LLO A;  3ZXN A;  1H4Y A;  1AUZ A;  4HYL A;  4QTP A;  3IH9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XS5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations