5EUSA

Rat prestin stas domain in complex with bromide
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
143
structure length
129
Chain Sequence
SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYNIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The STAS domain of mammalian SLC26A5 prestin harbours an anion-binding site.
pubmed doi rcsb
molecule tags Transport protein
source organism Rattus norvegicus
molecule keywords Prestin,Rat prestin STAS domain
total genus 40
structure length 129
sequence length 143
ec nomenclature
pdb deposition date 2015-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 5eusA00
2KLNA 3IH8A 3IHAA 1THNB 3LLOA 1TIDB 3T6OA 1TH8B 4DGHA 4QTPA 3AGEA 3IHBA 1BUZA 3AGDA 1SBOA 4HYLA 1H4YA 1T6RA 3ZTBA 3IH9A 4DGFA 3NY7A 1H4ZA 4XS5A 3F43A 2VY9A 3OIRA 5EUUA 3LKLA 5EUXA 3MGLA 2KA5A 5EUWA 1VC1A 1H4XA 1TILB 5EZBA 3OIZA 1AUZA 5EUZA 3ZXNA 3IF5A 5EUSA
chains in the Genus database with same CATH superfamily
2KLNA 3IH8A 1THNB 2RRLA 3LLOA 3K50A 4AE2A 1TIDB 4QTPA 3VSEA 3AGEA 1V0EA 1BUZA 2DXLA 3AGDA 3NY7A 1H4ZA 2OASA 4XS5A 3OIRA 1BPLA 4AEJA 3DUPA 3MOGA 3LKLA 1N6FA 3MGLA 1FC9A 3GK7A 1K32A 2CWWA 1FCFA 4DGHA 3C0KA 1T6RA 3ZTBA 3GVLA 3F43A 4JC0A 3QDQA 1HF2A 5EUXA 1H4XA 5EZBA 3OIZA 3JU4A 3IF5A 3IHAA 1V0FA 2ZO9B 3D03A 3T6OA 4DMGA 4HIZA 1SBOA 3IH9A 4L1CA 4DGFA 2AS0A 3LDFA 2VY9A 1N6EA 3V8VA 2KA5A 5EUWA 1VC1A 4L8KA 1WXXA 1J7XA 3V97A 5EUZA 3ZXNA 2ZOAA 5EUSA 2B78A 1FC7A 1N6DA 1TH8B 3D3UA 3IHBA 1WXWA 4HYLA 1H4YA 3DORA 3GVJA 3GHFA 2DXNA 3GMFA 5EUUA 3DJAA 4GHNA 1TILB 3EH7A 1FC6A 1AUZA 3GVKA
chains in the Genus database with same CATH topology
2KLNA 3IH8A 3IHAA 1THNB 3LLOA 1TIDB 3T6OA 1TH8B 4DGHA 4QTPA 3AGEA 3IHBA 1BUZA 3AGDA 1SBOA 4HYLA 1H4YA 1T6RA 3ZTBA 3IH9A 4DGFA 3NY7A 1H4ZA 4XS5A 3F43A 2VY9A 3OIRA 5EUUA 3LKLA 5EUXA 3MGLA 2KA5A 5EUWA 1VC1A 1H4XA 1TILB 5EZBA 3OIZA 1AUZA 5EUZA 3ZXNA 3IF5A 5EUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KLN A;  3IH8 A;  3IHA A;  1THN B;  3LLO A;  1TID B;  3T6O A;  1TH8 B;  4DGH A;  4QTP A;  3AGE A;  3IHB A;  1BUZ A;  3AGD A;  1SBO A;  4HYL A;  1H4Y A;  1T6R A;  3ZTB A;  3IH9 A;  4DGF A;  3NY7 A;  1H4Z A;  4XS5 A;  3F43 A;  2VY9 A;  3OIR A;  5EUU A;  3LKL A;  5EUX A;  3MGL A;  2KA5 A;  5EUW A;  1VC1 A;  1H4X A;  1TIL B;  5EZB A;  3OIZ A;  1AUZ A;  5EUZ A;  3ZXN A;  3IF5 A;  5EUS A; 
#chains in the Genus database with same CATH topology
 2KLN A;  3IH8 A;  1THN B;  2RRL A;  3LLO A;  3K50 A;  4AE2 A;  1TID B;  4QTP A;  3VSE A;  3AGE A;  1V0E A;  1BUZ A;  2DXL A;  3AGD A;  3NY7 A;  1H4Z A;  2OAS A;  4XS5 A;  3OIR A;  1BPL A;  4AEJ A;  3DUP A;  3MOG A;  3LKL A;  1N6F A;  3MGL A;  1FC9 A;  3GK7 A;  1K32 A;  2CWW A;  1FCF A;  4DGH A;  3C0K A;  1T6R A;  3ZTB A;  3GVL A;  3F43 A;  4JC0 A;  3QDQ A;  1HF2 A;  5EUX A;  1H4X A;  5EZB A;  3OIZ A;  3JU4 A;  3IF5 A;  3IHA A;  1V0F A;  2ZO9 B;  3D03 A;  3T6O A;  4DMG A;  4HIZ A;  1SBO A;  3IH9 A;  4L1C A;  4DGF A;  2AS0 A;  3LDF A;  2VY9 A;  1N6E A;  3V8V A;  2KA5 A;  5EUW A;  1VC1 A;  4L8K A;  1WXX A;  1J7X A;  3V97 A;  5EUZ A;  3ZXN A;  2ZOA A;  5EUS A;  2B78 A;  1FC7 A;  1N6D A;  1TH8 B;  3D3U A;  3IHB A;  1WXW A;  4HYL A;  1H4Y A;  3DOR A;  3GVJ A;  3GHF A;  2DXN A;  3GMF A;  5EUU A;  3DJA A;  4GHN A;  1TIL B;  3EH7 A;  1FC6 A;  1AUZ A;  3GVK A; 
#chains in the Genus database with same CATH homology
 2KLN A;  3IH8 A;  3IHA A;  1THN B;  3LLO A;  1TID B;  3T6O A;  1TH8 B;  4DGH A;  4QTP A;  3AGE A;  3IHB A;  1BUZ A;  3AGD A;  1SBO A;  4HYL A;  1H4Y A;  1T6R A;  3ZTB A;  3IH9 A;  4DGF A;  3NY7 A;  1H4Z A;  4XS5 A;  3F43 A;  2VY9 A;  3OIR A;  5EUU A;  3LKL A;  5EUX A;  3MGL A;  2KA5 A;  5EUW A;  1VC1 A;  1H4X A;  1TIL B;  5EZB A;  3OIZ A;  1AUZ A;  5EUZ A;  3ZXN A;  3IF5 A;  5EUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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