5EUUA

Rat prestin stas domain in complex with chloride
Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
143
structure length
129
Chain Sequence
SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYNIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
source organism Rattus norvegicus
publication title The STAS domain of mammalian SLC26A5 prestin harbours an anion-binding site.
pubmed doi rcsb
molecule keywords Prestin,Prestin
total genus 42
structure length 129
sequence length 143
ec nomenclature
pdb deposition date 2015-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 5euuA00
1THNB 4HYLA 1H4XA 5EUZA 3IHAA 4XS5A 3IF5A 5EUXA 1H4YA 3LLOA 3IHBA 1H4ZA 1T6RA 3T6OA 4DGFA 3NY7A 4QTPA 3F43A 3AGDA 1TH8B 5EUUA 1SBOA 3OIZA 2VY9A 3IH8A 1TILB 3IH9A 3LKLA 3ZXNA 1VC1A 1AUZA 2KA5A 3MGLA 1BUZA 3OIRA 3AGEA 4DGHA 5EUWA 5EUSA 1TIDB 5EZBA 3ZTBA 2KLNA
chains in the Genus database with same CATH superfamily
1FC9A 3IF5A 3K50A 1V0EA 3T6OA 5EUUA 1SBOA 3OIZA 3JU4A 2VY9A 1FCFA 3ZXNA 1AUZA 3LDFA 3OIRA 3AGEA 1J7XA 3QDQA 1TIDB 2DXLA 3ZTBA 1H4XA 5EUZA 3DJAA 5EUXA 2RRLA 1WXWA 3LLOA 2OASA 3EH7A 1N6EA 3GK7A 4QTPA 3C0KA 1HF2A 3IH8A 2KLNA 3IH9A 2KA5A 1K32A 4DGHA 3MOGA 2AS0A 4L8KA 1WXXA 3F43A 1THNB 4L1CA 3IHAA 1N6DA 3GVKA 4XS5A 4HIZA 1H4YA 3IHBA 4AE2A 3AGDA 4DMGA 3GMFA 3V97A 3LKLA 3VSEA 4JC0A 2CWWA 3V8VA 5EZBA 1FC7A 4HYLA 3D3UA 4GHNA 2B78A 1H4ZA 1T6RA 3DUPA 4DGFA 3NY7A 1BPLA 1TH8B 2ZOAA 4AEJA 3GVLA 1TILB 3DORA 3GHFA 1VC1A 1N6FA 1BUZA 3MGLA 2DXNA 3D03A 1FC6A 3GVJA 5EUWA 5EUSA 1V0FA 2ZO9B
chains in the Genus database with same CATH topology
1THNB 4HYLA 1H4XA 5EUZA 3IHAA 4XS5A 3IF5A 5EUXA 1H4YA 3LLOA 3IHBA 1H4ZA 1T6RA 3T6OA 4DGFA 3NY7A 4QTPA 3F43A 3AGDA 1TH8B 5EUUA 1SBOA 3OIZA 2VY9A 3IH8A 1TILB 3IH9A 3LKLA 3ZXNA 1VC1A 1AUZA 2KA5A 3MGLA 1BUZA 3OIRA 3AGEA 4DGHA 5EUWA 5EUSA 1TIDB 5EZBA 3ZTBA 2KLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1THN B;  4HYL A;  1H4X A;  5EUZ A;  3IHA A;  4XS5 A;  3IF5 A;  5EUX A;  1H4Y A;  3LLO A;  3IHB A;  1H4Z A;  1T6R A;  3T6O A;  4DGF A;  3NY7 A;  4QTP A;  3F43 A;  3AGD A;  1TH8 B;  5EUU A;  1SBO A;  3OIZ A;  2VY9 A;  3IH8 A;  1TIL B;  3IH9 A;  3LKL A;  3ZXN A;  1VC1 A;  1AUZ A;  2KA5 A;  3MGL A;  1BUZ A;  3OIR A;  3AGE A;  4DGH A;  5EUW A;  5EUS A;  1TID B;  5EZB A;  3ZTB A;  2KLN A; 
#chains in the Genus database with same CATH topology
 1FC9 A;  3IF5 A;  3K50 A;  1V0E A;  3T6O A;  5EUU A;  1SBO A;  3OIZ A;  3JU4 A;  2VY9 A;  1FCF A;  3ZXN A;  1AUZ A;  3LDF A;  3OIR A;  3AGE A;  1J7X A;  3QDQ A;  1TID B;  2DXL A;  3ZTB A;  1H4X A;  5EUZ A;  3DJA A;  5EUX A;  2RRL A;  1WXW A;  3LLO A;  2OAS A;  3EH7 A;  1N6E A;  3GK7 A;  4QTP A;  3C0K A;  1HF2 A;  3IH8 A;  2KLN A;  3IH9 A;  2KA5 A;  1K32 A;  4DGH A;  3MOG A;  2AS0 A;  4L8K A;  1WXX A;  3F43 A;  1THN B;  4L1C A;  3IHA A;  1N6D A;  3GVK A;  4XS5 A;  4HIZ A;  1H4Y A;  3IHB A;  4AE2 A;  3AGD A;  4DMG A;  3GMF A;  3V97 A;  3LKL A;  3VSE A;  4JC0 A;  2CWW A;  3V8V A;  5EZB A;  1FC7 A;  4HYL A;  3D3U A;  4GHN A;  2B78 A;  1H4Z A;  1T6R A;  3DUP A;  4DGF A;  3NY7 A;  1BPL A;  1TH8 B;  2ZOA A;  4AEJ A;  3GVL A;  1TIL B;  3DOR A;  3GHF A;  1VC1 A;  1N6F A;  1BUZ A;  3MGL A;  2DXN A;  3D03 A;  1FC6 A;  3GVJ A;  5EUW A;  5EUS A;  1V0F A;  2ZO9 B; 
#chains in the Genus database with same CATH homology
 1THN B;  4HYL A;  1H4X A;  5EUZ A;  3IHA A;  4XS5 A;  3IF5 A;  5EUX A;  1H4Y A;  3LLO A;  3IHB A;  1H4Z A;  1T6R A;  3T6O A;  4DGF A;  3NY7 A;  4QTP A;  3F43 A;  3AGD A;  1TH8 B;  5EUU A;  1SBO A;  3OIZ A;  2VY9 A;  3IH8 A;  1TIL B;  3IH9 A;  3LKL A;  3ZXN A;  1VC1 A;  1AUZ A;  2KA5 A;  3MGL A;  1BUZ A;  3OIR A;  3AGE A;  4DGH A;  5EUW A;  5EUS A;  1TID B;  5EZB A;  3ZTB A;  2KLN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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