1B01A

Transcriptional repressor copg/dna complex
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
43
structure length
43
Chain Sequence
MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator.
pubmed doi rcsb
molecule tags Gene regulation/dna
source organism Streptococcus agalactiae
molecule keywords DNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*A
total genus 13
structure length 43
sequence length 43
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01402 RHH_1 Ribbon-helix-helix protein, copG family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1b01A00
1B01A 3VW4A 2AY0A 1B28A 1ARRA 1Q5VA 2WVFA 3QOQA 2K9IA 2CPGA 3OD2A 1P94A 2BNZA 1MYKA 2HZVA 4D8JA 2BJ1A 2CAXA 2JXGA 2K29A 2WVBA 3H87C 3VEAA 2HZAA 1NLAA 2GPEA 2KELA 2WVDA 3FT7A 4FXEA 1BDTA 2K5JA 4HV0A 3GXQA 2RBFA 2BJ3A 2JXHA 2WVEA 2BJ9A 2BA3A 3VEBA 2BNWA 2BJ8A 2H1OE 1EA4A 1IRQA 2K6LA 2CADA 2BJ7A 1PARA 2K1OA 1MYLA 2CA9A 2WVCA 1QTGA 4ME7E 1ARQA 2CAJA 1U9PA 3FMTA 2JXIA 1BDVA 3LGHA 1X93A 1MNTA 2BSQE 1BAZA
chains in the Genus database with same CATH superfamily
4NRTA 3VW4A 2AY0A 2ADLA 2WK4A 2K9IA 3SFGA 1P94A 2HZVA 2BJ1A 3BSOA 2GPEA 3FT7A 1BDTA 2WVEA 3H5YA 2BA3A 3QIDA 1EA4A 2BJ7A 1MYLA 2KKEA 4LQ3A 3FMTA 3H5XA 2JXIA 2KOEA 2BSQE 2K6LA 1B28A 2AN7A 3G5OA 3QOQA 2BNZA 3BSNA 1MYKA 3UR0A 3H87C 3VEAA 2HZAA 2A2BA 4QPXA 2BJ3A 2BJ9A 2H1OE 3NNEA 1IRQA 2CA9A 4AAIA 1BDVA 2K5JA 1MNTA 1SH2A 1Q5VA 4LQ9A 2CKWA 2JXGA 4FXEA 2KELA 4HV0A 1Q16A 3NAHA 2JXHA 3VEBA 2BNWA 2BJ8A 1PARA 1SIWA 1SH0A 2WVCA 2H3AA 4ME7E 1ARQA 1U9PA 1X93A 3NO7A 1B01A 4NRUA 1SH3A 1ARRA 3SFUA 2WVFA 2JBVA 2CPGA 3OD2A 2Q2KA 4D8JA 2CAXA 2K29A 2UUTA 2WVBA 1NLAA 2WVDA 3IR7A 3GXQA 1OG7A 2UUWA 2RBFA 4O4RA 3UPFA 3NAIA 2CADA 2B43A 3LJPA 4MJWA 2K1OA 1QTGA 3UQSA 3LGHA 1OHNA 4LRVA 2CAJA 1BAZA
chains in the Genus database with same CATH topology
1B01A 3VW4A 2AY0A 1B28A 1ARRA 1Q5VA 2WVFA 3QOQA 2K9IA 2CPGA 3OD2A 1P94A 2BNZA 1MYKA 2HZVA 4D8JA 2BJ1A 2CAXA 2JXGA 2K29A 2WVBA 3H87C 3VEAA 2HZAA 1NLAA 2GPEA 2KELA 2WVDA 3FT7A 4FXEA 1BDTA 2K5JA 4HV0A 3GXQA 2RBFA 2BJ3A 2JXHA 2WVEA 2BJ9A 2BA3A 3VEBA 2BNWA 2BJ8A 2H1OE 1EA4A 1IRQA 2K6LA 2CADA 2BJ7A 1PARA 2K1OA 1MYLA 2CA9A 2WVCA 1QTGA 4ME7E 1ARQA 2CAJA 1U9PA 3FMTA 2JXIA 1BDVA 3LGHA 1X93A 1MNTA 2BSQE 1BAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B01 A;  3VW4 A;  2AY0 A;  1B28 A;  1ARR A;  1Q5V A;  2WVF A;  3QOQ A;  2K9I A;  2CPG A;  3OD2 A;  1P94 A;  2BNZ A;  1MYK A;  2HZV A;  4D8J A;  2BJ1 A;  2CAX A;  2JXG A;  2K29 A;  2WVB A;  3H87 C;  3VEA A;  2HZA A;  1NLA A;  2GPE A;  2KEL A;  2WVD A;  3FT7 A;  4FXE A;  1BDT A;  2K5J A;  4HV0 A;  3GXQ A;  2RBF A;  2BJ3 A;  2JXH A;  2WVE A;  2BJ9 A;  2BA3 A;  3VEB A;  2BNW A;  2BJ8 A;  2H1O E;  1EA4 A;  1IRQ A;  2K6L A;  2CAD A;  2BJ7 A;  1PAR A;  2K1O A;  1MYL A;  2CA9 A;  2WVC A;  1QTG A;  4ME7 E;  1ARQ A;  2CAJ A;  1U9P A;  3FMT A;  2JXI A;  1BDV A;  3LGH A;  1X93 A;  1MNT A;  2BSQ E;  1BAZ A; 
#chains in the Genus database with same CATH topology
 4NRT A;  3VW4 A;  2AY0 A;  2ADL A;  2WK4 A;  2K9I A;  3SFG A;  1P94 A;  2HZV A;  2BJ1 A;  3BSO A;  2GPE A;  3FT7 A;  1BDT A;  2WVE A;  3H5Y A;  2BA3 A;  3QID A;  1EA4 A;  2BJ7 A;  1MYL A;  2KKE A;  4LQ3 A;  3FMT A;  3H5X A;  2JXI A;  2KOE A;  2BSQ E;  2K6L A;  1B28 A;  2AN7 A;  3G5O A;  3QOQ A;  2BNZ A;  3BSN A;  1MYK A;  3UR0 A;  3H87 C;  3VEA A;  2HZA A;  2A2B A;  4QPX A;  2BJ3 A;  2BJ9 A;  2H1O E;  3NNE A;  1IRQ A;  2CA9 A;  4AAI A;  1BDV A;  2K5J A;  1MNT A;  1SH2 A;  1Q5V A;  4LQ9 A;  2CKW A;  2JXG A;  4FXE A;  2KEL A;  4HV0 A;  1Q16 A;  3NAH A;  2JXH A;  3VEB A;  2BNW A;  2BJ8 A;  1PAR A;  1SIW A;  1SH0 A;  2WVC A;  2H3A A;  4ME7 E;  1ARQ A;  1U9P A;  1X93 A;  3NO7 A;  1B01 A;  4NRU A;  1SH3 A;  1ARR A;  3SFU A;  2WVF A;  2JBV A;  2CPG A;  3OD2 A;  2Q2K A;  4D8J A;  2CAX A;  2K29 A;  2UUT A;  2WVB A;  1NLA A;  2WVD A;  3IR7 A;  3GXQ A;  1OG7 A;  2UUW A;  2RBF A;  4O4R A;  3UPF A;  3NAI A;  2CAD A;  2B43 A;  3LJP A;  4MJW A;  2K1O A;  1QTG A;  3UQS A;  3LGH A;  1OHN A;  4LRV A;  2CAJ A;  1BAZ A; 
#chains in the Genus database with same CATH homology
 1B01 A;  3VW4 A;  2AY0 A;  1B28 A;  1ARR A;  1Q5V A;  2WVF A;  3QOQ A;  2K9I A;  2CPG A;  3OD2 A;  1P94 A;  2BNZ A;  1MYK A;  2HZV A;  4D8J A;  2BJ1 A;  2CAX A;  2JXG A;  2K29 A;  2WVB A;  3H87 C;  3VEA A;  2HZA A;  1NLA A;  2GPE A;  2KEL A;  2WVD A;  3FT7 A;  4FXE A;  1BDT A;  2K5J A;  4HV0 A;  3GXQ A;  2RBF A;  2BJ3 A;  2JXH A;  2WVE A;  2BJ9 A;  2BA3 A;  3VEB A;  2BNW A;  2BJ8 A;  2H1O E;  1EA4 A;  1IRQ A;  2K6L A;  2CAD A;  2BJ7 A;  1PAR A;  2K1O A;  1MYL A;  2CA9 A;  2WVC A;  1QTG A;  4ME7 E;  1ARQ A;  2CAJ A;  1U9P A;  3FMT A;  2JXI A;  1BDV A;  3LGH A;  1X93 A;  1MNT A;  2BSQ E;  1BAZ A; 
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