The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
46
|
sequence length |
149
|
structure length |
149
|
Chain Sequence |
MKYQQLENLESGWKWAYLVKKHREGEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKRHFNAEHQHTRKKSIDLEFLVWQRLAVLARRRGNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDILDK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.
pubmed doi rcsb |
| source organism |
Yersinia pestis
|
| molecule tags |
Dna binding protein/dna
|
| molecule keywords |
Macrodomain Ter protein
|
| total genus |
46
|
| structure length |
149
|
| sequence length |
149
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-01-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06303 | MatP | MatP N-terminal domain |
| A | PF17414 | MatP_C | MatP C-terminal ribbon-helix-helix domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | ||
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 |
#chains in the Genus database with same CATH superfamily 2BJ1 A; 2JXG A; 1Q5V A; 4ME7 E; 1ARR A; 2K6L A; 2HZV A; 2K9I A; 4D8J A; 2GPE A; 3QOQ A; 2H1O E; 3LGH A; 2HZA A; 2BNW A; 2CAX A; 1BDT A; 1MNT A; 2WVD A; 3H87 C; 1NLA A; 3OD2 A; 2BNZ A; 2AY0 A; 1BDV A; 2CPG A; 3FMT A; 2K29 A; 2WVC A; 2CA9 A; 3VW4 A; 1ARQ A; 1P94 A; 2JXH A; 3FT7 A; 1B01 A; 2BA3 A; 4HV0 A; 2RBF A; 3VEB A; 2BJ8 A; 1PAR A; 1MYK A; 2JXI A; 1IRQ A; 1X93 A; 2CAJ A; 2WVF A; 3VEA A; 1EA4 A; 2BJ7 A; 1MYL A; 2CAD A; 2BJ3 A; 2K5J A; 1B28 A; 2WVE A; 3GXQ A; 2BJ9 A; 2BSQ E; 1QTG A; 1BAZ A; 4FXE A; 2K1O A; 2WVB A; 1U9P A; 2KEL A; #chains in the Genus database with same CATH topology 3SYV A; 4E81 A; 3SOG A; 2H3A A; 3F7W A; 4D8J A; 3QOQ A; 4HYB A; 3LMF A; 3FMT A; 4G6Q A; 1TQS A; 3HAJ A; 3BVV A; 3D4Z A; 3D4Y A; 4EZN A; 3LVT A; 4FM3 A; 1EA4 A; 2A2B A; 2YL8 A; 2BJ9 A; 2X3W A; 3B51 X; 5KBP A; 3ZED A; 2OW6 A; 3DX4 A; 2H1O E; 3ER8 C; 5FLE X; 3QID A; 1NLA A; 4JWC A; 3A98 A; 3DDF A; 2ELB A; 3FT7 A; 1MJG A; 2OO2 A; 4JNF A; 2RAJ A; 4M0M A; 3I04 A; 2EWF A; 2O0I 1; 2WVF A; 5C5B A; 1MYL A; 2WVE A; 4EZO A; 3SFG A; 1GNL A; 1BAZ A; 4FXE A; 4EZY A; 2WVB A; 4AZG A; 1B01 A; 2EFL A; 4EZR A; 2WIN M; 2EFK A; 3B52 X; 4EZW A; 1WDZ A; 2NCZ A; 2K29 A; 2QFF A; 4AAI A; 2BA3 A; 1TQV A; 2JXI A; 1X93 A; 3CZN A; 1OA0 A; 3EJU A; 3C7N A; 3BUD A; 1HWW A; 2AN7 A; 1YWM A; 1SH0 A; 3T49 A; 4LQ3 A; 3DPP A; 2CAX A; 2Z0N A; 3BVX A; 2BNZ A; 1I4L A; 2PMR A; 4NRU A; 4WPE A; 3PLT A; 4EZU A; 1MYK A; 3BUQ A; 2Z8Y A; 1GN9 A; 3I2W A; 2ND0 A; 3ER9 B; 2BJ1 A; 3UIT A; 4NSW A; 3BSO A; 2Q13 A; 4EZV A; 1HTY A; 3UQS A; 3O3M B; 4PO2 A; 3DX2 A; 1HXK A; 3DPQ A; 1OAO A; 1TQW A; 3D2E A; 1SU6 A; 3NNE A; 3T48 A; 2F7O A; 2BJ3 A; 2K5J A; 4AZB A; 4R5K A; 4B9Q A; 1E1D A; 3G5O A; 3Q84 A; 2FIC A; 2OZN B; 2Q12 A; 4IWO A; 4JN4 A; 3BVT A; 2LXY A; 1TQU A; 2YIA A; 3BUP A; 3M3W A; 3VEB A; 1ZWW A; 3H5X A; 5E84 A; 4AZC B; 1E9V A; 2RAK A; 3D50 A; 2Z0O A; 3KAV A; 4KIK B; 2K1O A; 3EJP A; 3BVU A; 4NPH A; 4LQ9 A; 2RAI A; 1Q16 A; 2GA9 D; 2KHO A; 4AZ6 A; 2YIV X; 3LJP A; 3VW4 A; 1SIW A; 2RBF A; 2X5C A; 2WK4 A; 2YI8 A; 1IRQ A; 2YL5 A; 2D4C A; 3NAH A; 4EZS A; 1QTG A; 3UPF A; 3D52 A; 4FZO A; 4NQI A; 1Y2O A; 2D1L A; 3D2F A; 4R5I A; 3HAH A; 1UPX A; 2GAF D; 2F7R A; 4ATM A; 4IM0 A; 2N3K A; 3DYT A; 4HY9 A; 4JWE A; 3EJT A; 2F7Q A; 4JWD A; 1SUF A; 4IM2 A; 3OHX M; 2QKW A; 2C08 A; 1SH2 A; 2UUW A; 4IWQ A; 4BNE A; 3B53 X; 3FD9 A; 3QE6 A; 4AZ5 A; 3VEA A; 4UDX X; 4H6H A; 4EZZ A; 4EZQ A; 3L3P A; 2FYV A; 2YL9 A; 1DKZ A; 3QNI A; 1ARR A; 3H5Y A; 3ABH A; 2ALW A; 2JNS A; 3DPO A; 3DX3 A; 2F1B A; 1OG7 A; 1X03 A; 3L3O M; 4EZT A; 3T46 A; 3ERC C; 3BUB A; 3IR7 A; 1OA1 A; 4H6I A; 3NAI A; 1O7D B; 2PY6 A; 4JL9 A; 2WYH A; 2OBM A; 3RPM A; 2ADL A; 2Q2K A; 2RT6 A; 4LRV A; 4QPX A; 2K6L A; 4NRT A; 3LGH A; 4AZC A; 2CPG A; 2QXL A; 4EZP A; 1SU8 A; 4FZS A; 3GI7 A; 4AZH A; 4H8S A; 2YL6 A; 2UUT A; 4AZI A; 4R5G A; 3O3O B; 4ME7 E; 2KKE A; 2GPE A; 1PS3 A; 1URU A; 2YLL A; 1MNT A; 1BDV A; 3DX1 A; 2JXH A; 3Q0K A; 2BJ8 A; 2YLA A; 2CAJ A; 3ACO A; 1GNT A; 2LM0 A; 2Z0V A; 2WYI A; 3VKH A; 1OHN A; 4HR1 B; 5TKY A; 3UR0 A; 3RV0 A; 3D51 A; 4AKV A; 2WVD A; 3OD2 A; 2ZXQ A; 2KOE A; 1QWU A; 2JNK A; 4HR1 A; 2CKW A; 4KIK A; 3OK8 A; 3T47 A; 4AZ7 A; 1DKY A; 3BUI A; 1U00 A; 1ZYL A; 3NO7 A; 1X04 A; 3G9G A; 3O3N B; 4DCN C; 3CAZ A; 1Q5V A; 2HZV A; 3I01 A; 3CKD A; 3OWG A; 2EX3 B; 2CA9 A; 4F00 A; 1O7D C; 2OW7 A; 4HV0 A; 4R5J A; 2X3V A; 4O4R A; 2BJ7 A; 1I4T A; 3CV5 A; 1R5E A; 3HAI A; 3QWE A; 3BVW A; 1I4D A; 3SFU A; 2KEL A; 2YIB A; 2X3X A; 4JLC A; 4R5L A; 1BDT A; 3QNJ A; 3H87 C; 5C5B B; 2AY0 A; 2MI7 A; 2WVC A; 4E3C A; 1W9M A; 2OBL A; 2YI9 A; 1PAR A; 1I49 A; 4DYL A; 1B28 A; 4UDY X; 3GXQ A; 1SU7 A; 3KDR A; 1U9P A; 1R34 A; 3CZS A; 3QA8 A; 2JXG A; 3DX0 A; 4I1Q A; 4AVM A; 4WPC A; 2F1A A; 2HZA A; 5FIG A; 4IWP A; 4MJW A; 3I39 X; 3EJS A; 1ARQ A; 4JWI A; 4JNE A; 1DKX A; 1JQK A; 1R33 A; 3EJR A; 2CAD A; 4IM3 A; 2JBV A; 2GF4 A; 3BSN A; 1E2U A; 1QWN A; 1TQT A; 3BLB A; 2V0O A; 2K9I A; 3KAW A; 3LLL A; 2BNW A; 3DDG A; 1SH3 A; 1LQ7 A; 2F18 A; 3CVR A; 4FZP A; 3RV1 A; 3T4A G; 2ND1 A; 1P94 A; 2F7P A; 1QX1 A; 2B43 A; 4IW0 A; 2YKT A; 4EZX A; 2BSQ E; 3EJQ A; 4F01 A; #chains in the Genus database with same CATH homology 2BJ1 A; 1Q5V A; 2HZV A; 1ARR A; 4E81 A; 3UIT A; 3F7W A; 4D8J A; 2JNS A; 3DPO A; 3QOQ A; 4EZV A; 4HYB A; 3I01 A; 3L3O M; 4EZT A; 3T46 A; 3OWG A; 2EX3 B; 3LMF A; 3O3M B; 4PO2 A; 3FMT A; 4G6Q A; 3ERC C; 3DPQ A; 2CA9 A; 1OAO A; 4F00 A; 3D2E A; 1OA1 A; 4HV0 A; 1SU6 A; 4R5J A; 4EZN A; 4H6I A; 3T48 A; 2PY6 A; 4FM3 A; 1EA4 A; 2BJ7 A; 2BJ3 A; 2K5J A; 4JL9 A; 4R5K A; 2OBM A; 2BJ9 A; 4B9Q A; 1E1D A; 3B51 X; 2RT6 A; 2KEL A; 3ZED A; 2K6L A; 2YIB A; 4JLC A; 2H1O E; 4R5L A; 3LGH A; 3ER8 C; 4IWO A; 4JN4 A; 5FLE X; 1BDT A; 3QNJ A; 3H87 C; 1NLA A; 2AY0 A; 2CPG A; 2QXL A; 4JWC A; 2YIA A; 4EZP A; 2WVC A; 1SU8 A; 3A98 A; 3FT7 A; 1MJG A; 3GI7 A; 1W9M A; 4E3C A; 2OBL A; 2YI9 A; 4JNF A; 3VEB A; 4M0M A; 1PAR A; 3I04 A; 2EWF A; 2WVF A; 1MYL A; 1B28 A; 4UDY X; 5E84 A; 2WVE A; 4EZO A; 1E9V A; 3GXQ A; 3KAV A; 1GNL A; 1BAZ A; 4FXE A; 1SU7 A; 2K1O A; 2WVB A; 3KDR A; 4KIK B; 4EZY A; 4NPH A; 1U9P A; 1B01 A; 4R5G A; 3O3O B; 3QA8 A; 2JXG A; 4ME7 E; 2WIN M; 4EZR A; 3B52 X; 2GPE A; 2GA9 D; 2HZA A; 2KHO A; 1MNT A; 5FIG A; 4EZW A; 4IWP A; 1BDV A; 3I39 X; 2NCZ A; 2K29 A; 2QFF A; 2YIV X; 3VW4 A; 1ARQ A; 2JXH A; 4JWI A; 4JNE A; 2BA3 A; 2RBF A; 1DKX A; 2BJ8 A; 2JXI A; 2X5C A; 2YI8 A; 1IRQ A; 1X93 A; 2CAJ A; 1JQK A; 2CAD A; 1GNT A; 4IM3 A; 1OA0 A; 2LM0 A; 3VKH A; 3C7N A; 4EZS A; 1QTG A; 1E2U A; 4HR1 B; 5TKY A; 3RV0 A; 3D2F A; 3T49 A; 4R5I A; 1UPX A; 3DPP A; 2K9I A; 2GAF D; 3KAW A; 4IM0 A; 2N3K A; 2BNW A; 2CAX A; 4HY9 A; 4JWE A; 4JWD A; 2WVD A; 3OD2 A; 2BNZ A; 1SUF A; 4IM2 A; 3OHX M; 3RV1 A; 4HR1 A; 3T4A G; 2ND1 A; 1P94 A; 4IWQ A; 4KIK A; 3B53 X; 3FD9 A; 1MYK A; 4EZU A; 3VEA A; 4UDX X; 3T47 A; 1DKY A; 1U00 A; 2Z8Y A; 4H6H A; 1ZYL A; 1GN9 A; 4IW0 A; 4EZX A; 4EZZ A; 4EZQ A; 2ND0 A; 2BSQ E; 3O3N B; 3ER9 B; 4F01 A; 1DKZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
