1BAZA

Arc repressor mutant phe10val
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
49
structure length
49
Chain Sequence
SKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (16-29)AH2 (33-48)EMPTYUpdating...
connected with : NaN
molecule tags Transcription regulation
source organism Enterobacteria phage p22
publication title Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
pubmed doi rcsb
molecule keywords ARC REPRESSOR
total genus 15
structure length 49
sequence length 49
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03869 Arc Arc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1bazA00
2WVDA 2RBFA 3LGHA 4D8JA 1B01A 2JXGA 2JXIA 2BSQE 2KELA 3VEBA 2BA3A 1X93A 3OD2A 2K5JA 1IRQA 1MNTA 2BJ3A 2BJ7A 2CAJA 1EA4A 2BNWA 1U9PA 2CA9A 2HZAA 1ARRA 3FMTA 2K1OA 3GXQA 1MYKA 1Q5VA 2BJ9A 2WVFA 2JXHA 1NLAA 2WVEA 1BDTA 3H87C 1QTGA 2K9IA 1PARA 1BAZA 3VW4A 2GPEA 1B28A 1BDVA 2BJ1A 2BNZA 4HV0A 3QOQA 2CPGA 3FT7A 2CAXA 2CADA 2WVCA 2HZVA 2H1OE 1ARQA 4ME7E 2BJ8A 2AY0A 1P94A 2WVBA 2K29A 3VEAA 1MYLA 2K6LA 4FXEA
chains in the Genus database with same CATH superfamily
4NRTA 2AN7A 3UR0A 2JXGA 2JXIA 3IR7A 4QPXA 3NO7A 1MNTA 2BJ3A 2BJ7A 2CAJA 1SH2A 4LQ3A 1U9PA 2CA9A 1MYKA 2JBVA 2K9IA 3H5YA 1BDVA 2BNZA 3QOQA 3FT7A 2H3AA 2HZVA 1ARQA 2WVBA 4FXEA 3UQSA 2WVDA 2RBFA 4D8JA 1OHNA 2BSQE 2KELA 3LJPA 2BA3A 1X93A 3OD2A 2ADLA 2HZAA 2KKEA 2K1OA 2BJ9A 2JXHA 1NLAA 2WVEA 3H87C 3VW4A 4O4RA 1B28A 2WVCA 3H5XA 1SH3A 2K29A 3VEAA 2A2BA 3BSOA 2UUTA 2Q2KA 3BSNA 3NAIA 2K5JA 1IRQA 1EA4A 2BNWA 3UPFA 1ARRA 3G5OA 3GXQA 2WVFA 1BDTA 1QTGA 2KOEA 2BJ1A 4LRVA 2CAXA 2CADA 4ME7E 4NRUA 2AY0A 1OG7A 3LGHA 1MYLA 1Q16A 4LQ9A 1SIWA 1B01A 4MJWA 3SFGA 2WK4A 3NNEA 3VEBA 3NAHA 3QIDA 2CKWA 3FMTA 2B43A 1Q5VA 1PARA 3SFUA 1BAZA 2GPEA 4HV0A 2UUWA 2CPGA 1SH0A 2H1OE 2BJ8A 1P94A 4AAIA 2K6LA
chains in the Genus database with same CATH topology
2WVDA 2RBFA 3LGHA 4D8JA 1B01A 2JXGA 2JXIA 2BSQE 2KELA 3VEBA 2BA3A 1X93A 3OD2A 2K5JA 1IRQA 1MNTA 2BJ3A 2BJ7A 2CAJA 1EA4A 2BNWA 1U9PA 2CA9A 2HZAA 1ARRA 3FMTA 2K1OA 3GXQA 1MYKA 1Q5VA 2BJ9A 2WVFA 2JXHA 1NLAA 2WVEA 1BDTA 3H87C 1QTGA 2K9IA 1PARA 1BAZA 3VW4A 2GPEA 1B28A 1BDVA 2BJ1A 2BNZA 4HV0A 3QOQA 2CPGA 3FT7A 2CAXA 2CADA 2WVCA 2HZVA 2H1OE 1ARQA 4ME7E 2BJ8A 2AY0A 1P94A 2WVBA 2K29A 3VEAA 1MYLA 2K6LA 4FXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WVD A;  2RBF A;  3LGH A;  4D8J A;  1B01 A;  2JXG A;  2JXI A;  2BSQ E;  2KEL A;  3VEB A;  2BA3 A;  1X93 A;  3OD2 A;  2K5J A;  1IRQ A;  1MNT A;  2BJ3 A;  2BJ7 A;  2CAJ A;  1EA4 A;  2BNW A;  1U9P A;  2CA9 A;  2HZA A;  1ARR A;  3FMT A;  2K1O A;  3GXQ A;  1MYK A;  1Q5V A;  2BJ9 A;  2WVF A;  2JXH A;  1NLA A;  2WVE A;  1BDT A;  3H87 C;  1QTG A;  2K9I A;  1PAR A;  1BAZ A;  3VW4 A;  2GPE A;  1B28 A;  1BDV A;  2BJ1 A;  2BNZ A;  4HV0 A;  3QOQ A;  2CPG A;  3FT7 A;  2CAX A;  2CAD A;  2WVC A;  2HZV A;  2H1O E;  1ARQ A;  4ME7 E;  2BJ8 A;  2AY0 A;  1P94 A;  2WVB A;  2K29 A;  3VEA A;  1MYL A;  2K6L A;  4FXE A; 
#chains in the Genus database with same CATH topology
 4NRT A;  2AN7 A;  3UR0 A;  2JXG A;  2JXI A;  3IR7 A;  4QPX A;  3NO7 A;  1MNT A;  2BJ3 A;  2BJ7 A;  2CAJ A;  1SH2 A;  4LQ3 A;  1U9P A;  2CA9 A;  1MYK A;  2JBV A;  2K9I A;  3H5Y A;  1BDV A;  2BNZ A;  3QOQ A;  3FT7 A;  2H3A A;  2HZV A;  1ARQ A;  2WVB A;  4FXE A;  3UQS A;  2WVD A;  2RBF A;  4D8J A;  1OHN A;  2BSQ E;  2KEL A;  3LJP A;  2BA3 A;  1X93 A;  3OD2 A;  2ADL A;  2HZA A;  2KKE A;  2K1O A;  2BJ9 A;  2JXH A;  1NLA A;  2WVE A;  3H87 C;  3VW4 A;  4O4R A;  1B28 A;  2WVC A;  3H5X A;  1SH3 A;  2K29 A;  3VEA A;  2A2B A;  3BSO A;  2UUT A;  2Q2K A;  3BSN A;  3NAI A;  2K5J A;  1IRQ A;  1EA4 A;  2BNW A;  3UPF A;  1ARR A;  3G5O A;  3GXQ A;  2WVF A;  1BDT A;  1QTG A;  2KOE A;  2BJ1 A;  4LRV A;  2CAX A;  2CAD A;  4ME7 E;  4NRU A;  2AY0 A;  1OG7 A;  3LGH A;  1MYL A;  1Q16 A;  4LQ9 A;  1SIW A;  1B01 A;  4MJW A;  3SFG A;  2WK4 A;  3NNE A;  3VEB A;  3NAH A;  3QID A;  2CKW A;  3FMT A;  2B43 A;  1Q5V A;  1PAR A;  3SFU A;  1BAZ A;  2GPE A;  4HV0 A;  2UUW A;  2CPG A;  1SH0 A;  2H1O E;  2BJ8 A;  1P94 A;  4AAI A;  2K6L A; 
#chains in the Genus database with same CATH homology
 2WVD A;  2RBF A;  3LGH A;  4D8J A;  1B01 A;  2JXG A;  2JXI A;  2BSQ E;  2KEL A;  3VEB A;  2BA3 A;  1X93 A;  3OD2 A;  2K5J A;  1IRQ A;  1MNT A;  2BJ3 A;  2BJ7 A;  2CAJ A;  1EA4 A;  2BNW A;  1U9P A;  2CA9 A;  2HZA A;  1ARR A;  3FMT A;  2K1O A;  3GXQ A;  1MYK A;  1Q5V A;  2BJ9 A;  2WVF A;  2JXH A;  1NLA A;  2WVE A;  1BDT A;  3H87 C;  1QTG A;  2K9I A;  1PAR A;  1BAZ A;  3VW4 A;  2GPE A;  1B28 A;  1BDV A;  2BJ1 A;  2BNZ A;  4HV0 A;  3QOQ A;  2CPG A;  3FT7 A;  2CAX A;  2CAD A;  2WVC A;  2HZV A;  2H1O E;  1ARQ A;  4ME7 E;  2BJ8 A;  2AY0 A;  1P94 A;  2WVB A;  2K29 A;  3VEA A;  1MYL A;  2K6L A;  4FXE A; 
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