1EA4A

Transcriptional repressor copg/22bp dsdna complex
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
42
structure length
42
Chain Sequence
KKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-24)EMPTYAH2 (28-40)Updating...
connected with : NaN
molecule tags Gene regulation/dna
source organism Streptococcus agalactiae
publication title Plasmid Transcriptional Repressor Copg Oligomerises to Render Helical Superstructures Unbound and in Complexes with Oligonucleotides
pubmed doi rcsb
molecule keywords TRANSCRIPTIONAL REPRESSOR COPG
total genus 12
structure length 42
sequence length 42
chains with identical sequence B, D, E, F, G, H, J, K, L
ec nomenclature
pdb deposition date 2000-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01402 RHH_1 Ribbon-helix-helix protein, copG family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1ea4A00
3GXQA 2K9IA 2BA3A 2AY0A 2BJ8A 2CPGA 2KELA 2HZVA 2JXIA 2K29A 1BDVA 2BSQE 1X93A 1ARRA 1IRQA 1PARA 2WVBA 3FT7A 3VEBA 2BJ7A 1U9PA 1BDTA 1MNTA 1P94A 1B28A 4FXEA 3VW4A 3LGHA 2GPEA 1ARQA 2WVDA 2CAJA 2CAXA 2BJ3A 2BNWA 1NLAA 4ME7E 2JXGA 2BJ1A 2BJ9A 2WVCA 1MYLA 1MYKA 2H1OE 3FMTA 1B01A 2WVFA 3QOQA 1QTGA 2JXHA 2K6LA 3H87C 3OD2A 4HV0A 3VEAA 4D8JA 1EA4A 2CA9A 2RBFA 2K5JA 2HZAA 1Q5VA 2K1OA 2BNZA 2WVEA 2CADA 1BAZA
chains in the Genus database with same CATH superfamily
2K9IA 4MJWA 3UPFA 4QPXA 1ARRA 4LQ3A 2BJ7A 1U9PA 1B28A 2Q2KA 3NAHA 1SIWA 4ME7E 2WVFA 2UUTA 3IR7A 2AN7A 2JXHA 2K6LA 2KOEA 1EA4A 3SFGA 4LQ9A 4NRTA 1Q5VA 2WK4A 2A2BA 2H3AA 3GXQA 2CPGA 2K29A 2BSQE 3G5OA 2UUWA 4LRVA 2WVBA 3QIDA 3UQSA 4FXEA 3LGHA 3H5XA 2WVDA 2CAJA 2BJ3A 1SH0A 2BJ1A 2WVCA 2JBVA 1MYLA 1MYKA 1Q16A 4NRUA 2HZAA 2BNZA 3VW4A 2CADA 1BAZA 3NO7A 2B43A 2BA3A 2AY0A 2BJ8A 2KKEA 2JXIA 1OG7A 1SH3A 1PARA 1P94A 3LJPA 3SFUA 4O4RA 4AAIA 2CAXA 1NLAA 2JXGA 3FMTA 1B01A 3QOQA 3H87C 3VEAA 3OD2A 2RBFA 2K5JA 2CKWA 3UR0A 2KELA 3H5YA 2HZVA 1BDVA 3NAIA 1X93A 1IRQA 3BSOA 3FT7A 3VEBA 1BDTA 1MNTA 2GPEA 3NNEA 2ADLA 1ARQA 2BNWA 1OHNA 1SH2A 2BJ9A 2H1OE 3BSNA 1QTGA 4HV0A 4D8JA 2CA9A 2K1OA 2WVEA
chains in the Genus database with same CATH topology
3GXQA 2K9IA 2BA3A 2AY0A 2BJ8A 2CPGA 2KELA 2HZVA 2JXIA 2K29A 1BDVA 2BSQE 1X93A 1ARRA 1IRQA 1PARA 2WVBA 3FT7A 3VEBA 2BJ7A 1U9PA 1BDTA 1MNTA 1P94A 1B28A 4FXEA 3VW4A 3LGHA 2GPEA 1ARQA 2WVDA 2CAJA 2CAXA 2BJ3A 2BNWA 1NLAA 4ME7E 2JXGA 2BJ1A 2BJ9A 2WVCA 1MYLA 1MYKA 2H1OE 3FMTA 1B01A 2WVFA 3QOQA 1QTGA 2JXHA 2K6LA 3H87C 3OD2A 4HV0A 3VEAA 4D8JA 1EA4A 2CA9A 2RBFA 2K5JA 2HZAA 1Q5VA 2K1OA 2BNZA 2WVEA 2CADA 1BAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GXQ A;  2K9I A;  2BA3 A;  2AY0 A;  2BJ8 A;  2CPG A;  2KEL A;  2HZV A;  2JXI A;  2K29 A;  1BDV A;  2BSQ E;  1X93 A;  1ARR A;  1IRQ A;  1PAR A;  2WVB A;  3FT7 A;  3VEB A;  2BJ7 A;  1U9P A;  1BDT A;  1MNT A;  1P94 A;  1B28 A;  4FXE A;  3VW4 A;  3LGH A;  2GPE A;  1ARQ A;  2WVD A;  2CAJ A;  2CAX A;  2BJ3 A;  2BNW A;  1NLA A;  4ME7 E;  2JXG A;  2BJ1 A;  2BJ9 A;  2WVC A;  1MYL A;  1MYK A;  2H1O E;  3FMT A;  1B01 A;  2WVF A;  3QOQ A;  1QTG A;  2JXH A;  2K6L A;  3H87 C;  3OD2 A;  4HV0 A;  3VEA A;  4D8J A;  1EA4 A;  2CA9 A;  2RBF A;  2K5J A;  2HZA A;  1Q5V A;  2K1O A;  2BNZ A;  2WVE A;  2CAD A;  1BAZ A; 
#chains in the Genus database with same CATH topology
 2K9I A;  4MJW A;  3UPF A;  4QPX A;  1ARR A;  4LQ3 A;  2BJ7 A;  1U9P A;  1B28 A;  2Q2K A;  3NAH A;  1SIW A;  4ME7 E;  2WVF A;  2UUT A;  3IR7 A;  2AN7 A;  2JXH A;  2K6L A;  2KOE A;  1EA4 A;  3SFG A;  4LQ9 A;  4NRT A;  1Q5V A;  2WK4 A;  2A2B A;  2H3A A;  3GXQ A;  2CPG A;  2K29 A;  2BSQ E;  3G5O A;  2UUW A;  4LRV A;  2WVB A;  3QID A;  3UQS A;  4FXE A;  3LGH A;  3H5X A;  2WVD A;  2CAJ A;  2BJ3 A;  1SH0 A;  2BJ1 A;  2WVC A;  2JBV A;  1MYL A;  1MYK A;  1Q16 A;  4NRU A;  2HZA A;  2BNZ A;  3VW4 A;  2CAD A;  1BAZ A;  3NO7 A;  2B43 A;  2BA3 A;  2AY0 A;  2BJ8 A;  2KKE A;  2JXI A;  1OG7 A;  1SH3 A;  1PAR A;  1P94 A;  3LJP A;  3SFU A;  4O4R A;  4AAI A;  2CAX A;  1NLA A;  2JXG A;  3FMT A;  1B01 A;  3QOQ A;  3H87 C;  3VEA A;  3OD2 A;  2RBF A;  2K5J A;  2CKW A;  3UR0 A;  2KEL A;  3H5Y A;  2HZV A;  1BDV A;  3NAI A;  1X93 A;  1IRQ A;  3BSO A;  3FT7 A;  3VEB A;  1BDT A;  1MNT A;  2GPE A;  3NNE A;  2ADL A;  1ARQ A;  2BNW A;  1OHN A;  1SH2 A;  2BJ9 A;  2H1O E;  3BSN A;  1QTG A;  4HV0 A;  4D8J A;  2CA9 A;  2K1O A;  2WVE A; 
#chains in the Genus database with same CATH homology
 3GXQ A;  2K9I A;  2BA3 A;  2AY0 A;  2BJ8 A;  2CPG A;  2KEL A;  2HZV A;  2JXI A;  2K29 A;  1BDV A;  2BSQ E;  1X93 A;  1ARR A;  1IRQ A;  1PAR A;  2WVB A;  3FT7 A;  3VEB A;  2BJ7 A;  1U9P A;  1BDT A;  1MNT A;  1P94 A;  1B28 A;  4FXE A;  3VW4 A;  3LGH A;  2GPE A;  1ARQ A;  2WVD A;  2CAJ A;  2CAX A;  2BJ3 A;  2BNW A;  1NLA A;  4ME7 E;  2JXG A;  2BJ1 A;  2BJ9 A;  2WVC A;  1MYL A;  1MYK A;  2H1O E;  3FMT A;  1B01 A;  2WVF A;  3QOQ A;  1QTG A;  2JXH A;  2K6L A;  3H87 C;  3OD2 A;  4HV0 A;  3VEA A;  4D8J A;  1EA4 A;  2CA9 A;  2RBF A;  2K5J A;  2HZA A;  1Q5V A;  2K1O A;  2BNZ A;  2WVE A;  2CAD A;  1BAZ A; 
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