1MYKA

Crystal structure, folding, and operator binding of the hyperstable arc repressor mutant pl8
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
47
structure length
47
Chain Sequence
KMLQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure, folding, and operator binding of the hyperstable Arc repressor mutant PL8.
pubmed doi rcsb
molecule tags Transcription regulation
source organism Enterobacteria phage p22
molecule keywords ARC REPRESSOR
total genus 15
structure length 47
sequence length 47
chains with identical sequence B
ec nomenclature
pdb deposition date 1994-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03869 Arc Arc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1mykA00
2BA3A 2HZVA 1Q5VA 2K29A 2BSQE 3VEBA 1ARQA 4HV0A 1MYLA 4ME7E 4D8JA 2KELA 2K9IA 2CAXA 1U9PA 2K5JA 2HZAA 3VW4A 1EA4A 2BJ3A 2WVDA 1P94A 1X93A 2RBFA 2BNWA 1QTGA 1BAZA 2BJ8A 2WVEA 2CADA 1MYKA 2BJ1A 1NLAA 3QOQA 3OD2A 2BNZA 3FMTA 3H87C 2K6LA 2JXIA 2CAJA 1B01A 3VEAA 1BDVA 4FXEA 1PARA 1BDTA 1B28A 2BJ9A 3LGHA 2CA9A 3GXQA 2BJ7A 1ARRA 1MNTA 2CPGA 2JXHA 2K1OA 2AY0A 3FT7A 2GPEA 2WVBA 2H1OE 2JXGA 2WVCA 2WVFA 1IRQA
chains in the Genus database with same CATH superfamily
2K29A 2UUWA 3UPFA 1OG7A 1ARQA 1MYLA 4D8JA 2K9IA 2BJ3A 2RBFA 1P94A 1QTGA 2B43A 1SH3A 2BJ1A 4MJWA 1NLAA 3QOQA 3OD2A 2JXIA 1B01A 2CKWA 1BDVA 2BJ7A 1ARRA 1MNTA 4LQ3A 2AY0A 2K5JA 1IRQA 2BSQE 4HV0A 4ME7E 2ADLA 4AAIA 3H5YA 2HZAA 3VW4A 1EA4A 3SFUA 2BNWA 3SFGA 3LJPA 2WK4A 3UR0A 2K6LA 2CAJA 1OHNA 3VEAA 1B28A 2BJ9A 2KOEA 3H5XA 2K1OA 2GPEA 2WVBA 3UQSA 2H1OE 3LGHA 2WVFA 2BA3A 3G5OA 2HZVA 2KELA 2CAXA 1U9PA 1X93A 1BAZA 1SIWA 3NO7A 2WVEA 2CADA 4NRTA 4LQ9A 4NRUA 1Q16A 1BDTA 3IR7A 3BSNA 3NAHA 1SH0A 3GXQA 3NNEA 3BSOA 2JXHA 2CPGA 3NAIA 2JXGA 1SH2A 1Q5VA 2KKEA 4O4RA 3VEBA 2WVDA 4QPXA 2BJ8A 4LRVA 3QIDA 2A2BA 1MYKA 2Q2KA 2BNZA 3FMTA 3H87C 2AN7A 4FXEA 1PARA 2UUTA 2H3AA 2CA9A 2JBVA 3FT7A 2WVCA
chains in the Genus database with same CATH topology
2BA3A 2HZVA 1Q5VA 2K29A 2BSQE 3VEBA 1ARQA 4HV0A 1MYLA 4ME7E 4D8JA 2KELA 2K9IA 2CAXA 1U9PA 2K5JA 2HZAA 3VW4A 1EA4A 2BJ3A 2WVDA 1P94A 1X93A 2RBFA 2BNWA 1QTGA 1BAZA 2BJ8A 2WVEA 2CADA 1MYKA 2BJ1A 1NLAA 3QOQA 3OD2A 2BNZA 3FMTA 3H87C 2K6LA 2JXIA 2CAJA 1B01A 3VEAA 1BDVA 4FXEA 1PARA 1BDTA 1B28A 2BJ9A 3LGHA 2CA9A 3GXQA 2BJ7A 1ARRA 1MNTA 2CPGA 2JXHA 2K1OA 2AY0A 3FT7A 2GPEA 2WVBA 2H1OE 2JXGA 2WVCA 2WVFA 1IRQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BA3 A;  2HZV A;  1Q5V A;  2K29 A;  2BSQ E;  3VEB A;  1ARQ A;  4HV0 A;  1MYL A;  4ME7 E;  4D8J A;  2KEL A;  2K9I A;  2CAX A;  1U9P A;  2K5J A;  2HZA A;  3VW4 A;  1EA4 A;  2BJ3 A;  2WVD A;  1P94 A;  1X93 A;  2RBF A;  2BNW A;  1QTG A;  1BAZ A;  2BJ8 A;  2WVE A;  2CAD A;  1MYK A;  2BJ1 A;  1NLA A;  3QOQ A;  3OD2 A;  2BNZ A;  3FMT A;  3H87 C;  2K6L A;  2JXI A;  2CAJ A;  1B01 A;  3VEA A;  1BDV A;  4FXE A;  1PAR A;  1BDT A;  1B28 A;  2BJ9 A;  3LGH A;  2CA9 A;  3GXQ A;  2BJ7 A;  1ARR A;  1MNT A;  2CPG A;  2JXH A;  2K1O A;  2AY0 A;  3FT7 A;  2GPE A;  2WVB A;  2H1O E;  2JXG A;  2WVC A;  2WVF A;  1IRQ A; 
#chains in the Genus database with same CATH topology
 2K29 A;  2UUW A;  3UPF A;  1OG7 A;  1ARQ A;  1MYL A;  4D8J A;  2K9I A;  2BJ3 A;  2RBF A;  1P94 A;  1QTG A;  2B43 A;  1SH3 A;  2BJ1 A;  4MJW A;  1NLA A;  3QOQ A;  3OD2 A;  2JXI A;  1B01 A;  2CKW A;  1BDV A;  2BJ7 A;  1ARR A;  1MNT A;  4LQ3 A;  2AY0 A;  2K5J A;  1IRQ A;  2BSQ E;  4HV0 A;  4ME7 E;  2ADL A;  4AAI A;  3H5Y A;  2HZA A;  3VW4 A;  1EA4 A;  3SFU A;  2BNW A;  3SFG A;  3LJP A;  2WK4 A;  3UR0 A;  2K6L A;  2CAJ A;  1OHN A;  3VEA A;  1B28 A;  2BJ9 A;  2KOE A;  3H5X A;  2K1O A;  2GPE A;  2WVB A;  3UQS A;  2H1O E;  3LGH A;  2WVF A;  2BA3 A;  3G5O A;  2HZV A;  2KEL A;  2CAX A;  1U9P A;  1X93 A;  1BAZ A;  1SIW A;  3NO7 A;  2WVE A;  2CAD A;  4NRT A;  4LQ9 A;  4NRU A;  1Q16 A;  1BDT A;  3IR7 A;  3BSN A;  3NAH A;  1SH0 A;  3GXQ A;  3NNE A;  3BSO A;  2JXH A;  2CPG A;  3NAI A;  2JXG A;  1SH2 A;  1Q5V A;  2KKE A;  4O4R A;  3VEB A;  2WVD A;  4QPX A;  2BJ8 A;  4LRV A;  3QID A;  2A2B A;  1MYK A;  2Q2K A;  2BNZ A;  3FMT A;  3H87 C;  2AN7 A;  4FXE A;  1PAR A;  2UUT A;  2H3A A;  2CA9 A;  2JBV A;  3FT7 A;  2WVC A; 
#chains in the Genus database with same CATH homology
 2BA3 A;  2HZV A;  1Q5V A;  2K29 A;  2BSQ E;  3VEB A;  1ARQ A;  4HV0 A;  1MYL A;  4ME7 E;  4D8J A;  2KEL A;  2K9I A;  2CAX A;  1U9P A;  2K5J A;  2HZA A;  3VW4 A;  1EA4 A;  2BJ3 A;  2WVD A;  1P94 A;  1X93 A;  2RBF A;  2BNW A;  1QTG A;  1BAZ A;  2BJ8 A;  2WVE A;  2CAD A;  1MYK A;  2BJ1 A;  1NLA A;  3QOQ A;  3OD2 A;  2BNZ A;  3FMT A;  3H87 C;  2K6L A;  2JXI A;  2CAJ A;  1B01 A;  3VEA A;  1BDV A;  4FXE A;  1PAR A;  1BDT A;  1B28 A;  2BJ9 A;  3LGH A;  2CA9 A;  3GXQ A;  2BJ7 A;  1ARR A;  1MNT A;  2CPG A;  2JXH A;  2K1O A;  2AY0 A;  3FT7 A;  2GPE A;  2WVB A;  2H1O E;  2JXG A;  2WVC A;  2WVF A;  1IRQ A; 
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