1OG7 | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	43
structure length	43
Chain Sequence	KYYGNGVHCGKHSCTVDWGTAIGNIGNNAAANWATGGNAGWNK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 43 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antibiotic
source organism	Lactobacillus sake
publication title	Three-Dimensional Structure in Lipid Micelles of the Pediocin-Like Antimicrobial Peptide Sakacin P and a Sakacin P Variant that is Structurally Stabilized by an Inserted C-Terminal Disulfide Bridge pubmed doi rcsb
molecule keywords	BACTERIOCIN SAKACIN P
total genus	9
structure length	43
sequence length	43
ec nomenclature
pdb deposition date	2003-04-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01721	Bacteriocin_II	Class II bacteriocin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.30	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	1og7A01

1OHNA 2A2BA 1OG7A
chains in the Genus database with same CATH superfamily

1B28A 3GXQA 2A2BA 1ARRA 2KOEA 1MNTA 1OG7A 3QOQA 2WVEA 2GPEA 2BNZA 2ADLA 4NRUA 3VEBA 1QTGA 4QPXA 2K1OA 2WVDA 2CKWA 2WK4A 3LGHA 1SH3A 4D8JA 2KKEA 2CPGA 2B43A 3NAHA 1X93A 2HZAA 1B01A 3UPFA 4HV0A 2BSQE 1IRQA 2AY0A 3IR7A 1NLAA 2CAJA 2JXIA 2BJ7A 3FT7A 2WVBA 1SIWA 1BAZA 2HZVA 2K9IA 2UUWA 3OD2A 1EA4A 1MYKA 2CADA 3UQSA 1BDVA 2H1OE 2AN7A 4LQ9A 3BSNA 3LJPA 4ME7E 2JXGA 2CAXA 3UR0A 2JBVA 3VW4A 4NRTA 2K29A 1OHNA 2RBFA 2BNWA 3SFUA 3NNEA 2WVFA 2KELA 2WVCA 1PARA 1MYLA 2Q2KA 1SH0A 1ARQA 2BJ3A 3H5XA 2UUTA 3H87C 3H5YA 3BSOA 3G5OA 2BJ1A 3SFGA 4LQ3A 2H3AA 2K5JA 2BJ9A 2BJ8A 4AAIA 3NAIA 1Q16A 1Q5VA 1BDTA 2BA3A 1SH2A 3NO7A 1P94A 3FMTA 4O4RA 2JXHA 2K6LA 1U9PA 2CA9A 4LRVA 3VEAA 4MJWA 3QIDA 4FXEA
chains in the Genus database with same CATH topology

2KKEA 3NAHA 2B43A 3H5XA 2A2BA 2KOEA 2UUTA 3H5YA 3UQSA 3BSOA 3G5OA 3UPFA 4LQ3A 3SFGA 1OG7A 2H3AA 2AN7A 4LQ9A 3BSNA 3LJPA 4AAIA 3NAIA 2ADLA 1Q16A 3UR0A 3IR7A 4NRUA 2JBVA 4NRTA 1SH2A 4QPXA 3NO7A 4O4RA 1OHNA 3SFUA 2CKWA 2WK4A 3NNEA 4LRVA 4MJWA 1SIWA 1SH3A 3QIDA 2Q2KA 2UUWA 1SH0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1OHN A;  2A2B A;  1OG7 A; 
#chains in the Genus database with same CATH topology
 1B28 A;  3GXQ A;  2A2B A;  1ARR A;  2KOE A;  1MNT A;  1OG7 A;  3QOQ A;  2WVE A;  2GPE A;  2BNZ A;  2ADL A;  4NRU A;  3VEB A;  1QTG A;  4QPX A;  2K1O A;  2WVD A;  2CKW A;  2WK4 A;  3LGH A;  1SH3 A;  4D8J A;  2KKE A;  2CPG A;  2B43 A;  3NAH A;  1X93 A;  2HZA A;  1B01 A;  3UPF A;  4HV0 A;  2BSQ E;  1IRQ A;  2AY0 A;  3IR7 A;  1NLA A;  2CAJ A;  2JXI A;  2BJ7 A;  3FT7 A;  2WVB A;  1SIW A;  1BAZ A;  2HZV A;  2K9I A;  2UUW A;  3OD2 A;  1EA4 A;  1MYK A;  2CAD A;  3UQS A;  1BDV A;  2H1O E;  2AN7 A;  4LQ9 A;  3BSN A;  3LJP A;  4ME7 E;  2JXG A;  2CAX A;  3UR0 A;  2JBV A;  3VW4 A;  4NRT A;  2K29 A;  1OHN A;  2RBF A;  2BNW A;  3SFU A;  3NNE A;  2WVF A;  2KEL A;  2WVC A;  1PAR A;  1MYL A;  2Q2K A;  1SH0 A;  1ARQ A;  2BJ3 A;  3H5X A;  2UUT A;  3H87 C;  3H5Y A;  3BSO A;  3G5O A;  2BJ1 A;  3SFG A;  4LQ3 A;  2H3A A;  2K5J A;  2BJ9 A;  2BJ8 A;  4AAI A;  3NAI A;  1Q16 A;  1Q5V A;  1BDT A;  2BA3 A;  1SH2 A;  3NO7 A;  1P94 A;  3FMT A;  4O4R A;  2JXH A;  2K6L A;  1U9P A;  2CA9 A;  4LRV A;  3VEA A;  4MJW A;  3QID A;  4FXE A; 
#chains in the Genus database with same CATH homology
 2KKE A;  3NAH A;  2B43 A;  3H5X A;  2A2B A;  2KOE A;  2UUT A;  3H5Y A;  3UQS A;  3BSO A;  3G5O A;  3UPF A;  4LQ3 A;  3SFG A;  1OG7 A;  2H3A A;  2AN7 A;  4LQ9 A;  3BSN A;  3LJP A;  4AAI A;  3NAI A;  2ADL A;  1Q16 A;  3UR0 A;  3IR7 A;  4NRU A;  2JBV A;  4NRT A;  1SH2 A;  4QPX A;  3NO7 A;  4O4R A;  1OHN A;  3SFU A;  2CKW A;  2WK4 A;  3NNE A;  4LRV A;  4MJW A;  1SIW A;  1SH3 A;  3QID A;  2Q2K A;  2UUW A;  1SH0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OG7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations