1OHN | Genus

Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	10
sequence length	43
structure length	43
Chain Sequence	KYYGNGVHCGKHSCTVDWGTAIGNIGNNAAANWATGGNAGWNK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 43 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antibiotic
source organism	Lactobacillus sake
publication title	Three-Dimensional Structure in Lipid Micelles of the Pediocin-Like Antimicrobial Peptide Sakacin P and a Sakacin P Variant that is Structurally Stabilized by an Inserted C-Terminal Disulfide Bridge pubmed doi rcsb
molecule keywords	BACTERIOCIN SAKACIN P
total genus	10
structure length	43
sequence length	43
ec nomenclature
pdb deposition date	2003-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01721	Bacteriocin_II	Class II bacteriocin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.30	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	1ohnA00

1OG7A 1OHNA 2A2BA
chains in the Genus database with same CATH superfamily

2BJ1A 1Q16A 1SIWA 2WVEA 3QIDA 2CKWA 1BAZA 3G5OA 2GPEA 2BJ3A 2K5JA 3VEBA 1EA4A 3H5XA 2JBVA 2BSQE 3UR0A 2K1OA 1ARRA 3IR7A 2B43A 1QTGA 3NAHA 2JXHA 3NAIA 1BDTA 2BJ9A 3FMTA 2CA9A 3UPFA 3QOQA 4LRVA 2K6LA 3VEAA 1B28A 2BJ7A 2AN7A 2WVDA 2H1OE 3BSOA 2K9IA 2H3AA 3NNEA 4FXEA 1B01A 1Q5VA 2K29A 2ADLA 1IRQA 2BNWA 3VW4A 3FT7A 4NRUA 2JXGA 1ARQA 1SH3A 2KKEA 1SH2A 2WVCA 2CADA 2AY0A 1OHNA 1MNTA 3LJPA 3NO7A 4QPXA 4LQ9A 3SFGA 1U9PA 2UUWA 1SH0A 4HV0A 3OD2A 2HZAA 2WVBA 2KELA 3H5YA 2JXIA 2CAXA 1MYLA 1P94A 3LGHA 1X93A 4NRTA 2Q2KA 2BNZA 2A2BA 1NLAA 1MYKA 2CAJA 3BSNA 2WVFA 1BDVA 4MJWA 4LQ3A 4O4RA 2CPGA 2WK4A 2HZVA 1OG7A 1PARA 4ME7E 4D8JA 3UQSA 3SFUA 2RBFA 4AAIA 2BA3A 3H87C 3GXQA 2UUTA 2KOEA 2BJ8A
chains in the Genus database with same CATH topology

4NRTA 2Q2KA 4NRUA 3NAHA 3NAIA 1Q16A 1SH3A 2A2BA 3UPFA 2KKEA 1SH2A 4LRVA 1SIWA 3BSNA 1OHNA 3LJPA 3NO7A 4MJWA 4QPXA 4O4RA 4LQ3A 2WK4A 4LQ9A 3QIDA 3SFGA 2AN7A 2UUWA 2CKWA 1OG7A 1SH0A 3G5OA 3BSOA 2H3AA 3NNEA 3H5XA 2JBVA 3UQSA 3SFUA 3H5YA 4AAIA 3UR0A 2UUTA 3IR7A 2KOEA 2B43A 2ADLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1OG7 A;  1OHN A;  2A2B A; 
#chains in the Genus database with same CATH topology
 2BJ1 A;  1Q16 A;  1SIW A;  2WVE A;  3QID A;  2CKW A;  1BAZ A;  3G5O A;  2GPE A;  2BJ3 A;  2K5J A;  3VEB A;  1EA4 A;  3H5X A;  2JBV A;  2BSQ E;  3UR0 A;  2K1O A;  1ARR A;  3IR7 A;  2B43 A;  1QTG A;  3NAH A;  2JXH A;  3NAI A;  1BDT A;  2BJ9 A;  3FMT A;  2CA9 A;  3UPF A;  3QOQ A;  4LRV A;  2K6L A;  3VEA A;  1B28 A;  2BJ7 A;  2AN7 A;  2WVD A;  2H1O E;  3BSO A;  2K9I A;  2H3A A;  3NNE A;  4FXE A;  1B01 A;  1Q5V A;  2K29 A;  2ADL A;  1IRQ A;  2BNW A;  3VW4 A;  3FT7 A;  4NRU A;  2JXG A;  1ARQ A;  1SH3 A;  2KKE A;  1SH2 A;  2WVC A;  2CAD A;  2AY0 A;  1OHN A;  1MNT A;  3LJP A;  3NO7 A;  4QPX A;  4LQ9 A;  3SFG A;  1U9P A;  2UUW A;  1SH0 A;  4HV0 A;  3OD2 A;  2HZA A;  2WVB A;  2KEL A;  3H5Y A;  2JXI A;  2CAX A;  1MYL A;  1P94 A;  3LGH A;  1X93 A;  4NRT A;  2Q2K A;  2BNZ A;  2A2B A;  1NLA A;  1MYK A;  2CAJ A;  3BSN A;  2WVF A;  1BDV A;  4MJW A;  4LQ3 A;  4O4R A;  2CPG A;  2WK4 A;  2HZV A;  1OG7 A;  1PAR A;  4ME7 E;  4D8J A;  3UQS A;  3SFU A;  2RBF A;  4AAI A;  2BA3 A;  3H87 C;  3GXQ A;  2UUT A;  2KOE A;  2BJ8 A; 
#chains in the Genus database with same CATH homology
 4NRT A;  2Q2K A;  4NRU A;  3NAH A;  3NAI A;  1Q16 A;  1SH3 A;  2A2B A;  3UPF A;  2KKE A;  1SH2 A;  4LRV A;  1SIW A;  3BSN A;  1OHN A;  3LJP A;  3NO7 A;  4MJW A;  4QPX A;  4O4R A;  4LQ3 A;  2WK4 A;  4LQ9 A;  3QID A;  3SFG A;  2AN7 A;  2UUW A;  2CKW A;  1OG7 A;  1SH0 A;  3G5O A;  3BSO A;  2H3A A;  3NNE A;  3H5X A;  2JBV A;  3UQS A;  3SFU A;  3H5Y A;  4AAI A;  3UR0 A;  2UUT A;  3IR7 A;  2KOE A;  2B43 A;  2ADL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OHNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations