1PEOA

Ribonucleotide reductase protein r1e from salmonella typhimurium
Total Genus 249
100200300400500600050100150200250
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
249
sequence length
688
structure length
681
Chain Sequence
ETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL
100200300400500600600500400300200100
050100150200Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Salmonella typhimurium
publication title Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
pubmed doi rcsb
molecule keywords Ribonucleoside-diphosphate reductase 2 alpha chain
total genus 249
structure length 681
sequence length 688
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2003-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF08343 RNR_N Ribonucleotide reductase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1650.20 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 1peoA03
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 1peoA02
3RSRA 2F3OA 3R1RA 3S8BA 2XAYA 2XAZA 5CNTA 3HNEA 5CNUA 2XAWA 1PEOA 1R8WA 3HNCA 2PFLA 1L1LA 2CVWA 2CVXA 2XO5A 1PEMA 6R1RA 2ZLGA 4MTJA 3HNDA 1PEUA 1H7BA 2XO4A 4R1RA 2Y8NA 1XJGA 2BQ1E 5CNVA 2CVYA 2CVTA 1HK8A 1XJJA 1ZYZA 2XAKA 1R9DA 1XJNA 3HNFA 1H17A 3S87A 3O0OA 1H78A 2R1RA 1XJMA 1QHMA 1PEQA 7R1RA 1RLRA 3O0QA 3S8AA 2CVUA 3TBAA 1CM5A 1XJKA 2WGHA 4X3VA 2ZLFA 3TB9A 2X0XA 1H7AA 3S8CA 1XJEA 1H79A 2CVVA 5CNSA 2YAJA 2EUDA 3PFLA 4ERMA 1H18A 1XJFA 2CVSA 2XAVA 1ZZDA 5R1RA 1H16A 1MZOA 1R1RA 2HA9A 3K8TA 3O0NA 2XAPA 2XAXA
chains in the Genus database with same CATH superfamily
3RSRA 1VQ8P 1VQ9P 3CXCO 3CMEP 1VQ6P 2F3OA 3R1RA 3S8BA 2XAYA 2XAZA 5CNTA 3HNEA 5CNUA 3G71P 3CD6P 1Q7YQ 2XAWA 3CPWO 1PEOA 1R8WA 3HNCA 3CCMP 1VQ7P 2PFLA 1L1LA 1YI2P 1YJNP 2CVWA 2CVXA 1NJIQ 2XO5A 1PEMA 6R1RA 2ZLGA 4MTJA 1Q82Q 3HNDA 1PEUA 1H7BA 2XO4A 4R1RA 1K73Q 2OTJP 1S72P 2QEXP 5FAVA 2Y8NA 1M1KQ 1XJGA 3I55P 2BQ1E 5CNVA 1VQ5P 3OW2O 3CCEP 1QVFO 2CVYA 2CVTA 5KDPA 3CMAP 1HK8A 1XJJA 1KC8Q 5FAYA 1K9MQ 3G4SP 5FAUA 5A0ZA 1W2BO 1YITP 1ZYZA 2XAKA 1R9DA 1VQKP 1XJNA 3HNFA 1H17A 3CC7P 1KD1Q 3S87A 3O0OA 1H78A 2R1RA 1XJMA 1QHMA 3CCRP 1PEQA 3CC4P 7R1RA 1RLRA 3O0QA 3CCSP 2QA4P 3S8AA 2CVUA 3TBAA 3CCJP 1VQOP 1CM5A 3CCLP 1XJKA 3I56P 1Q86Q 2WGHA 1VQPP 4X3VA 1VQLP 1KQSO 1VQNP 2ZLFA 2X0XA 3TB9A 1Q81Q 1YHQP 1H7AA 3S8CA 1XJEA 3CCQP 1YJWP 1H79A 1VQMP 2CVVA 5FAWA 5CNSA 5A0UA 2YAJA 3CCUP 2EUDA 3PFLA 1JJ2O 3G6EP 1YJ9P 2OTLP 4ERMA 3CCVP 1QVGO 1H18A 1XJFA 2CVSA 2XAVA 1ZZDA 5R1RA 1VQ4P 1H16A 1M90Q 1MZOA 1R1RA 2HA9A 3K8TA 1YIJP 3O0NA 2XAPA 3CC2P 1K8AQ 1N8RQ 2XAXA
chains in the Genus database with same CATH topology
3RSRA 1VQ8P 1VQ9P 3CXCO 3CMEP 1VQ6P 2F3OA 3R1RA 3S8BA 2XAYA 2XAZA 5CNTA 3HNEA 5CNUA 3G71P 3CD6P 1Q7YQ 2XAWA 3CPWO 1PEOA 1R8WA 3HNCA 3CCMP 1VQ7P 2PFLA 1L1LA 1YI2P 1YJNP 2CVWA 2CVXA 1NJIQ 2XO5A 1PEMA 6R1RA 2ZLGA 4MTJA 1Q82Q 3HNDA 1PEUA 1H7BA 2XO4A 4R1RA 1K73Q 2OTJP 1S72P 2QEXP 5FAVA 2Y8NA 1M1KQ 1XJGA 3I55P 2BQ1E 5CNVA 1VQ5P 3OW2O 3CCEP 1QVFO 2CVYA 2CVTA 5KDPA 3CMAP 1HK8A 1XJJA 1KC8Q 5FAYA 1K9MQ 3G4SP 5FAUA 5A0ZA 1W2BO 1YITP 1ZYZA 2XAKA 1R9DA 1VQKP 1XJNA 3HNFA 1H17A 3CC7P 1KD1Q 3S87A 3O0OA 1H78A 2R1RA 1XJMA 1QHMA 3CCRP 1PEQA 3CC4P 7R1RA 1RLRA 3O0QA 3CCSP 2QA4P 3S8AA 2CVUA 3TBAA 3CCJP 1VQOP 1CM5A 3CCLP 1XJKA 3I56P 1Q86Q 2WGHA 1VQPP 4X3VA 1VQLP 1KQSO 1VQNP 2ZLFA 2X0XA 3TB9A 1Q81Q 1YHQP 1H7AA 3S8CA 1XJEA 3CCQP 1YJWP 1H79A 1VQMP 2CVVA 5FAWA 5CNSA 5A0UA 2YAJA 3CCUP 2EUDA 3PFLA 1JJ2O 3G6EP 1YJ9P 2OTLP 4ERMA 3CCVP 1QVGO 1H18A 1XJFA 2CVSA 2XAVA 1ZZDA 5R1RA 1VQ4P 1H16A 1M90Q 1MZOA 1R1RA 2HA9A 3K8TA 1YIJP 3O0NA 2XAPA 3CC2P 1K8AQ 1N8RQ 2XAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RSR A;  2F3O A;  3R1R A;  3S8B A;  2XAY A;  2XAZ A;  5CNT A;  3HNE A;  5CNU A;  2XAW A;  1PEO A;  1R8W A;  3HNC A;  2PFL A;  1L1L A;  2CVW A;  2CVX A;  2XO5 A;  1PEM A;  6R1R A;  2ZLG A;  4MTJ A;  3HND A;  1PEU A;  1H7B A;  2XO4 A;  4R1R A;  2Y8N A;  1XJG A;  2BQ1 E;  5CNV A;  2CVY A;  2CVT A;  1HK8 A;  1XJJ A;  1ZYZ A;  2XAK A;  1R9D A;  1XJN A;  3HNF A;  1H17 A;  3S87 A;  3O0O A;  1H78 A;  2R1R A;  1XJM A;  1QHM A;  1PEQ A;  7R1R A;  1RLR A;  3O0Q A;  3S8A A;  2CVU A;  3TBA A;  1CM5 A;  1XJK A;  2WGH A;  4X3V A;  2ZLF A;  3TB9 A;  2X0X A;  1H7A A;  3S8C A;  1XJE A;  1H79 A;  2CVV A;  5CNS A;  2YAJ A;  2EUD A;  3PFL A;  4ERM A;  1H18 A;  1XJF A;  2CVS A;  2XAV A;  1ZZD A;  5R1R A;  1H16 A;  1MZO A;  1R1R A;  2HA9 A;  3K8T A;  3O0N A;  2XAP A;  2XAX A; 
#chains in the Genus database with same CATH topology
 3RSR A;  1VQ8 P;  1VQ9 P;  3CXC O;  3CME P;  1VQ6 P;  2F3O A;  3R1R A;  3S8B A;  2XAY A;  2XAZ A;  5CNT A;  3HNE A;  5CNU A;  3G71 P;  3CD6 P;  1Q7Y Q;  2XAW A;  3CPW O;  1PEO A;  1R8W A;  3HNC A;  3CCM P;  1VQ7 P;  2PFL A;  1L1L A;  1YI2 P;  1YJN P;  2CVW A;  2CVX A;  1NJI Q;  2XO5 A;  1PEM A;  6R1R A;  2ZLG A;  4MTJ A;  1Q82 Q;  3HND A;  1PEU A;  1H7B A;  2XO4 A;  4R1R A;  1K73 Q;  2OTJ P;  1S72 P;  2QEX P;  5FAV A;  2Y8N A;  1M1K Q;  1XJG A;  3I55 P;  2BQ1 E;  5CNV A;  1VQ5 P;  3OW2 O;  3CCE P;  1QVF O;  2CVY A;  2CVT A;  5KDP A;  3CMA P;  1HK8 A;  1XJJ A;  1KC8 Q;  5FAY A;  1K9M Q;  3G4S P;  5FAU A;  5A0Z A;  1W2B O;  1YIT P;  1ZYZ A;  2XAK A;  1R9D A;  1VQK P;  1XJN A;  3HNF A;  1H17 A;  3CC7 P;  1KD1 Q;  3S87 A;  3O0O A;  1H78 A;  2R1R A;  1XJM A;  1QHM A;  3CCR P;  1PEQ A;  3CC4 P;  7R1R A;  1RLR A;  3O0Q A;  3CCS P;  2QA4 P;  3S8A A;  2CVU A;  3TBA A;  3CCJ P;  1VQO P;  1CM5 A;  3CCL P;  1XJK A;  3I56 P;  1Q86 Q;  2WGH A;  1VQP P;  4X3V A;  1VQL P;  1KQS O;  1VQN P;  2ZLF A;  2X0X A;  3TB9 A;  1Q81 Q;  1YHQ P;  1H7A A;  3S8C A;  1XJE A;  3CCQ P;  1YJW P;  1H79 A;  1VQM P;  2CVV A;  5FAW A;  5CNS A;  5A0U A;  2YAJ A;  3CCU P;  2EUD A;  3PFL A;  1JJ2 O;  3G6E P;  1YJ9 P;  2OTL P;  4ERM A;  3CCV P;  1QVG O;  1H18 A;  1XJF A;  2CVS A;  2XAV A;  1ZZD A;  5R1R A;  1VQ4 P;  1H16 A;  1M90 Q;  1MZO A;  1R1R A;  2HA9 A;  3K8T A;  1YIJ P;  3O0N A;  2XAP A;  3CC2 P;  1K8A Q;  1N8R Q;  2XAX A; 
#chains in the Genus database with same CATH homology
 3RSR A;  1VQ8 P;  1VQ9 P;  3CXC O;  3CME P;  1VQ6 P;  2F3O A;  3R1R A;  3S8B A;  2XAY A;  2XAZ A;  5CNT A;  3HNE A;  5CNU A;  3G71 P;  3CD6 P;  1Q7Y Q;  2XAW A;  3CPW O;  1PEO A;  1R8W A;  3HNC A;  3CCM P;  1VQ7 P;  2PFL A;  1L1L A;  1YI2 P;  1YJN P;  2CVW A;  2CVX A;  1NJI Q;  2XO5 A;  1PEM A;  6R1R A;  2ZLG A;  4MTJ A;  1Q82 Q;  3HND A;  1PEU A;  1H7B A;  2XO4 A;  4R1R A;  1K73 Q;  2OTJ P;  1S72 P;  2QEX P;  5FAV A;  2Y8N A;  1M1K Q;  1XJG A;  3I55 P;  2BQ1 E;  5CNV A;  1VQ5 P;  3OW2 O;  3CCE P;  1QVF O;  2CVY A;  2CVT A;  5KDP A;  3CMA P;  1HK8 A;  1XJJ A;  1KC8 Q;  5FAY A;  1K9M Q;  3G4S P;  5FAU A;  5A0Z A;  1W2B O;  1YIT P;  1ZYZ A;  2XAK A;  1R9D A;  1VQK P;  1XJN A;  3HNF A;  1H17 A;  3CC7 P;  1KD1 Q;  3S87 A;  3O0O A;  1H78 A;  2R1R A;  1XJM A;  1QHM A;  3CCR P;  1PEQ A;  3CC4 P;  7R1R A;  1RLR A;  3O0Q A;  3CCS P;  2QA4 P;  3S8A A;  2CVU A;  3TBA A;  3CCJ P;  1VQO P;  1CM5 A;  3CCL P;  1XJK A;  3I56 P;  1Q86 Q;  2WGH A;  1VQP P;  4X3V A;  1VQL P;  1KQS O;  1VQN P;  2ZLF A;  2X0X A;  3TB9 A;  1Q81 Q;  1YHQ P;  1H7A A;  3S8C A;  1XJE A;  3CCQ P;  1YJW P;  1H79 A;  1VQM P;  2CVV A;  5FAW A;  5CNS A;  5A0U A;  2YAJ A;  3CCU P;  2EUD A;  3PFL A;  1JJ2 O;  3G6E P;  1YJ9 P;  2OTL P;  4ERM A;  3CCV P;  1QVG O;  1H18 A;  1XJF A;  2CVS A;  2XAV A;  1ZZD A;  5R1R A;  1VQ4 P;  1H16 A;  1M90 Q;  1MZO A;  1R1R A;  2HA9 A;  3K8T A;  1YIJ P;  3O0N A;  2XAP A;  3CC2 P;  1K8A Q;  1N8R Q;  2XAX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.