1JJ2O

Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
143
structure length
143
Chain Sequence
TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The kink-turn: a new RNA secondary structure motif.
pubmed doi rcsb
total genus 47
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2001-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01280 Ribosomal_L19e Ribosomal protein L19e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.60 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1jj2O02
1.10.1650.10 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 1jj2O01
1KQSO 3I55P 3CCSP 1K9MQ 2QA4P 1YI2P 1W2BO 1NJIQ 1KD1Q 1YHQP 1VQ9P 1QVGO 3CMAP 3CCVP 1VQ5P 1YJWP 1JJ2O 1K73Q 1VQ4P 1VQLP 3G6EP 3CMEP 1M1KQ 1VQPP 1K8AQ 1N8RQ 1VQNP 1Q86Q 3CCJP 3CC2P 1VQMP 3CXCO 3CCLP 2QEXP 3G71P 1Q82Q 1KC8Q 1VQ7P 3CCMP 1Q81Q 3CD6P 3I56P 1YITP 1VQ6P 3OW2O 3CCQP 1VQKP 1Q7YQ 3CPWO 3CCUP 1YJ9P 1VQOP 1S72P 1VQ8P 3G4SP 3CC7P 3CCEP 2OTLP 2OTJP 1YJNP 1YIJP 3CCRP 1M90Q 1QVFO 3CC4P
chains in the Genus database with same CATH superfamily
1OR5A 2JO0A 2PY8A 1A8OA 2NO8A 2VLQA 3CCLP 3WBHA 2FADA 1VQ6P 1DV5A 3OW2O 5HV8A 4GR2A 2KG8A 1E0HA 1A43A 2LTEA 5HVCA 1IMQA 2FHSC 1T8KA 3G26A 1K9MQ 5JPAA 2L6EA 5KP6B 1CEIA 1K73Q 3CMEP 1K8AQ 2E1MA 4QKOA 1K30A 2MD9A 1RO2A 2JU2A 3HZQA 2PEOA 4H2WC 2CGQA 2LPKA 4PXHB 4QNBA 3CCEP 1RO0A 1ZMBA 3CC4P 3P05A 2KW2A 1L0HA 1W2BO 3EJDA 2KR5A 1VQ5P 4IPYA 1F80D 1NQ4A 2CG5B 2Z45A 2N5HA 1Q7YQ 2KOQA 1M6NA 2JYLA 5HGNA 3GJNA 2CWOA 3CCRP 2XZ0D 5CZDB 7CEIA 4R0MA 3I55P 2PEKA 4DG9A 3DS3A 4PWVB 1JJ2O 2LIWA 2PEMA 2LKIA 2LOLA 4U0AA 1Q81Q 2OTLP 4COCA 2K93A 3DS5A 5DCKA 3CE7A 2Z46A 2DGYA 1YI2P 2EG5A 4XFXA 1VQ4P 2K2QA 2DNWA 2EIAA 2FVAA 1VHNA 2PEJA 1VQKP 5HGLA 1VQOP 2VLPA 1M6EX 1YIJP 2KOPA 1QRJA 4WYMA 2K92A 4COPA 3E2DA 1GXHA 2KGEA 2XXMA 4U0BA 1YJWP 4U0EA 2AF8A 3G1IA 3B4QA 2K5XA 2LMLA 2KODA 4GR6A 3I56P 1KLPA 1EMVA 3H47A 3EJBA 2MR8A 2OTJP 2BUOA 2BHVA 1YHQP 3CMAP 2GZFA 3GZLA 1FR2A 4U0CA 4MRTC 3RG2A 3CCJP 4U0DA 3G28A 4UHPB 2KORA 3CPWO 1L0IA 2KG9A 2LIUA 5HGMA 4HKGA 3DS4A 3G0VA 2N6ZA 4H2YC 1PEOA 3DS2A 2QA4P 1PEQA 2K94A 2AFDA 1M1KQ 2M8LA 2VLOA 3HYBA 1N8RQ 2MY5A 2FACA 2FQ1A 2VLNA 1BXIA 4XFYA 3DPHA 3CXCO 2MVVA 2XT1A 4IZ6A 2KOSA 5KP8B 2JYGA 1YJNP 2ERHA 2WPTA 1ZNVA 2JGPA 5BS1A 1VQMP 2MF4A 3CD6P 2KGDA 3NTEA 1PEMA 2FVFA 2L22A 3LMOA 1EIAA 2X2BA 3VRLC 1MZ8A 1UJZA 1DNYA 2PEQA 2GYKA 1E6JP 2JQ4A 1KQSO 3H4EA 1VQNP 2CNRA 1IMPA 1IUQA 1VQPP 2PNGA 2LL8A 1Q86Q 2AVAA 3MGEA 3G71P 2JB0A 5BS2A 2XV6A 2KGAA 3DS1A 2PEIA 3G4SP 5I4TG 1Z6MA 2KOOA 1X3OA 4XFZA 2L9FA 2ROQA 1NJIQ 1KD1Q 2Z44A 1VQLP 3GZMA 4U0FA 2KWLA 3DS0A 4XRQA 5F2OA 2N98A 2L0QA 2BQ1E 4BPFA 3CCQP 2FQ2A 3G1GA 2JU1A 2N50A 2K0DX 3CCSP 2LF4A 2EFJA 2GZGA 2GDXA 1Q82Q 3RG6C 1UNKA 2GZJA 3CCUP 3M1MA 3G29A 3CC7P 4PH1A 2JAZA 2XZ1C 4BPGA 3EJEA 1BAJA 1VKUA 1VQ9P 1D1DA 3CCVP 2EHTA 3NY7B 3G6EP 2PENA 3LRYA 1ACPA 2GZIA 5EJDA 1HQBA 1YITP 2FQ0A 2GZEA 4M0IA 1AYIA 2VSQA 3GKLC 1M74A 5HGOA 3B5IA 3DTJA 1HY8A 2CQ8A 2MVUA 5F2KA 2AFEA 4PH0A 2GDYA 2K0YA 4BPHA 1YJ9P 1S72P 1PEUA 1AF8A 3G21A 1M90Q 3Q20A 2L4BA 2KG6A 2M8NA 5EW5E 2QNWA 2M5RA 4XROA 5F2NA 3U43A 2QEXP 1KC8Q 1VQ7P 1GXGA 5KP7B 4CA3A 3H0DA 1RNIA 2JBGA 2N6YA 4NEOA 2GDWA 1AUMA 2MR7A 1QVFO 2EHSA 2N5IA 1QVGO 3CC2P 1GPJA 2FAEA 3CCMP 2M8PA 1VQ8P 2ONTA 2FVEA 2K0XA 2P9XA 4H2XC 4F37A 2KGCA 2OARA 1EOQA
chains in the Genus database with same CATH topology
2Z46A 1BAJA 2DGYA 2JO0A 1YI2P 2EG5A 1VQ9P 1D1DA 4XFXA 3CCVP 2PY8A 1VQ4P 3G6EP 2PENA 3LRYA 1A8OA 2EIAA 5BS1A 1VQMP 3CCLP 3WBHA 3CD6P 1YITP 2PEJA 3NTEA 1VQ6P 1PEMA 3OW2O 1VQKP 5HGLA 1VQOP 1EIAA 4GR2A 4M0IA 1A43A 1M6EX 3VRLC 1YIJP 1M74A 5HGOA 1QRJA 4WYMA 4COPA 2PEQA 3E2DA 1E6JP 1KQSO 3H4EA 3G26A 1K9MQ 5JPAA 2L6EA 2XXMA 1VQNP 3B5IA 4U0BA 1YJWP 1K73Q 4U0EA 3DTJA 3CMEP 1IUQA 3G1IA 1VQPP 2E1MA 1K8AQ 1Q86Q 5F2KA 3MGEA 2KODA 1K30A 4PH0A 3G71P 4GR6A 3I56P 1RO2A 5BS2A 3H47A 3HZQA 2XV6A 1YJ9P 1S72P 2PEOA 3DS1A 1PEUA 2PEIA 3G4SP 3CCEP 4QNBA 3G21A 2OTJP 5I4TG 1RO0A 1ZMBA 1M90Q 3CC4P 3Q20A 2BUOA 3P05A 2BHVA 4XFZA 1W2BO 1NJIQ 1KD1Q 2Z44A 1YHQP 3CMAP 1VQ5P 1VQLP 2M8NA 4U0CA 4XROA 4U0FA 4IPYA 5F2NA 3DS0A 4XRQA 5F2OA 3CCJP 2QEXP 2Z45A 1KC8Q 1VQ7P 4U0DA 2BQ1E 3G28A 3CCQP 1RNIA 3H0DA 1Q7YQ 3CPWO 1M6NA 3G1GA 2JYLA 5HGNA 1AUMA 2CWOA 5HGMA 3CCRP 1QVFO 3DS4A 3G0VA 3I55P 3CCSP 2PEKA 1PEOA 3DS2A 2QA4P 1PEQA 3DS3A 1QVGO 2LF4A 1JJ2O 2EFJA 1M1KQ 2M8LA 1N8RQ 3HYBA 2PEMA 4XFYA 3CC2P 3DPHA 3CXCO 4U0AA 1Q82Q 3RG6C 3CCMP 1Q81Q 2M8PA 2XT1A 3CCUP 1VQ8P 2ONTA 3M1MA 2JYGA 3G29A 3CC7P 2OTLP 1YJNP 4COCA 2P9XA 4PH1A 2OARA 1EOQA 3DS5A 5DCKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQS O;  3I55 P;  3CCS P;  1K9M Q;  2QA4 P;  1YI2 P;  1W2B O;  1NJI Q;  1KD1 Q;  1YHQ P;  1VQ9 P;  1QVG O;  3CMA P;  3CCV P;  1VQ5 P;  1YJW P;  1JJ2 O;  1K73 Q;  1VQ4 P;  1VQL P;  3G6E P;  3CME P;  1M1K Q;  1VQP P;  1K8A Q;  1N8R Q;  1VQN P;  1Q86 Q;  3CCJ P;  3CC2 P;  1VQM P;  3CXC O;  3CCL P;  2QEX P;  3G71 P;  1Q82 Q;  1KC8 Q;  1VQ7 P;  3CCM P;  1Q81 Q;  3CD6 P;  3I56 P;  1YIT P;  1VQ6 P;  3OW2 O;  3CCQ P;  1VQK P;  1Q7Y Q;  3CPW O;  3CCU P;  1YJ9 P;  1VQO P;  1S72 P;  1VQ8 P;  3G4S P;  3CC7 P;  3CCE P;  2OTL P;  2OTJ P;  1YJN P;  1YIJ P;  3CCR P;  1M90 Q;  1QVF O;  3CC4 P; 
#chains in the Genus database with same CATH topology
 1OR5 A;  2JO0 A;  2PY8 A;  1A8O A;  2NO8 A;  2VLQ A;  3CCL P;  3WBH A;  2FAD A;  1VQ6 P;  1DV5 A;  3OW2 O;  5HV8 A;  4GR2 A;  2KG8 A;  1E0H A;  1A43 A;  2LTE A;  5HVC A;  1IMQ A;  2FHS C;  1T8K A;  3G26 A;  1K9M Q;  5JPA A;  2L6E A;  5KP6 B;  1CEI A;  1K73 Q;  3CME P;  1K8A Q;  2E1M A;  4QKO A;  1K30 A;  2MD9 A;  1RO2 A;  2JU2 A;  3HZQ A;  2PEO A;  4H2W C;  2CGQ A;  2LPK A;  4PXH B;  4QNB A;  3CCE P;  1RO0 A;  1ZMB A;  3CC4 P;  3P05 A;  2KW2 A;  1L0H A;  1W2B O;  3EJD A;  2KR5 A;  1VQ5 P;  4IPY A;  1F80 D;  1NQ4 A;  2CG5 B;  2Z45 A;  2N5H A;  1Q7Y Q;  2KOQ A;  1M6N A;  2JYL A;  5HGN A;  3GJN A;  2CWO A;  3CCR P;  2XZ0 D;  5CZD B;  7CEI A;  4R0M A;  3I55 P;  2PEK A;  4DG9 A;  3DS3 A;  4PWV B;  1JJ2 O;  2LIW A;  2PEM A;  2LKI A;  2LOL A;  4U0A A;  1Q81 Q;  2OTL P;  4COC A;  2K93 A;  3DS5 A;  5DCK A;  3CE7 A;  2Z46 A;  2DGY A;  1YI2 P;  2EG5 A;  4XFX A;  1VQ4 P;  2K2Q A;  2DNW A;  2EIA A;  2FVA A;  1VHN A;  2PEJ A;  1VQK P;  5HGL A;  1VQO P;  2VLP A;  1M6E X;  1YIJ P;  2KOP A;  1QRJ A;  4WYM A;  2K92 A;  4COP A;  3E2D A;  1GXH A;  2KGE A;  2XXM A;  4U0B A;  1YJW P;  4U0E A;  2AF8 A;  3G1I A;  3B4Q A;  2K5X A;  2LML A;  2KOD A;  4GR6 A;  3I56 P;  1KLP A;  1EMV A;  3H47 A;  3EJB A;  2MR8 A;  2OTJ P;  2BUO A;  2BHV A;  1YHQ P;  3CMA P;  2GZF A;  3GZL A;  1FR2 A;  4U0C A;  4MRT C;  3RG2 A;  3CCJ P;  4U0D A;  3G28 A;  4UHP B;  2KOR A;  3CPW O;  1L0I A;  2KG9 A;  2LIU A;  5HGM A;  4HKG A;  3DS4 A;  3G0V A;  2N6Z A;  4H2Y C;  1PEO A;  3DS2 A;  2QA4 P;  1PEQ A;  2K94 A;  2AFD A;  1M1K Q;  2M8L A;  2VLO A;  3HYB A;  1N8R Q;  2MY5 A;  2FAC A;  2FQ1 A;  2VLN A;  1BXI A;  4XFY A;  3DPH A;  3CXC O;  2MVV A;  2XT1 A;  4IZ6 A;  2KOS A;  5KP8 B;  2JYG A;  1YJN P;  2ERH A;  2WPT A;  1ZNV A;  2JGP A;  5BS1 A;  1VQM P;  2MF4 A;  3CD6 P;  2KGD A;  3NTE A;  1PEM A;  2FVF A;  2L22 A;  3LMO A;  1EIA A;  2X2B A;  3VRL C;  1MZ8 A;  1UJZ A;  1DNY A;  2PEQ A;  2GYK A;  1E6J P;  2JQ4 A;  1KQS O;  3H4E A;  1VQN P;  2CNR A;  1IMP A;  1IUQ A;  1VQP P;  2PNG A;  2LL8 A;  1Q86 Q;  2AVA A;  3MGE A;  3G71 P;  2JB0 A;  5BS2 A;  2XV6 A;  2KGA A;  3DS1 A;  2PEI A;  3G4S P;  5I4T G;  1Z6M A;  2KOO A;  1X3O A;  4XFZ A;  2L9F A;  2ROQ A;  1NJI Q;  1KD1 Q;  2Z44 A;  1VQL P;  3GZM A;  4U0F A;  2KWL A;  3DS0 A;  4XRQ A;  5F2O A;  2N98 A;  2L0Q A;  2BQ1 E;  4BPF A;  3CCQ P;  2FQ2 A;  3G1G A;  2JU1 A;  2N50 A;  2K0D X;  3CCS P;  2LF4 A;  2EFJ A;  2GZG A;  2GDX A;  1Q82 Q;  3RG6 C;  1UNK A;  2GZJ A;  3CCU P;  3M1M A;  3G29 A;  3CC7 P;  4PH1 A;  2JAZ A;  2XZ1 C;  4BPG A;  3EJE A;  1BAJ A;  1VKU A;  1VQ9 P;  1D1D A;  3CCV P;  2EHT A;  3NY7 B;  3G6E P;  2PEN A;  3LRY A;  1ACP A;  2GZI A;  5EJD A;  1HQB A;  1YIT P;  2FQ0 A;  2GZE A;  4M0I A;  1AYI A;  2VSQ A;  3GKL C;  1M74 A;  5HGO A;  3B5I A;  3DTJ A;  1HY8 A;  2CQ8 A;  2MVU A;  5F2K A;  2AFE A;  4PH0 A;  2GDY A;  2K0Y A;  4BPH A;  1YJ9 P;  1S72 P;  1PEU A;  1AF8 A;  3G21 A;  1M90 Q;  3Q20 A;  2L4B A;  2KG6 A;  2M8N A;  5EW5 E;  2QNW A;  2M5R A;  4XRO A;  5F2N A;  3U43 A;  2QEX P;  1KC8 Q;  1VQ7 P;  1GXG A;  5KP7 B;  4CA3 A;  3H0D A;  1RNI A;  2JBG A;  2N6Y A;  4NEO A;  2GDW A;  1AUM A;  2MR7 A;  1QVF O;  2EHS A;  2N5I A;  1QVG O;  3CC2 P;  1GPJ A;  2FAE A;  3CCM P;  2M8P A;  1VQ8 P;  2ONT A;  2FVE A;  2K0X A;  2P9X A;  4H2X C;  4F37 A;  2KGC A;  2OAR A;  1EOQ A; 
#chains in the Genus database with same CATH homology
 2Z46 A;  1BAJ A;  2DGY A;  2JO0 A;  1YI2 P;  2EG5 A;  1VQ9 P;  1D1D A;  4XFX A;  3CCV P;  2PY8 A;  1VQ4 P;  3G6E P;  2PEN A;  3LRY A;  1A8O A;  2EIA A;  5BS1 A;  1VQM P;  3CCL P;  3WBH A;  3CD6 P;  1YIT P;  2PEJ A;  3NTE A;  1VQ6 P;  1PEM A;  3OW2 O;  1VQK P;  5HGL A;  1VQO P;  1EIA A;  4GR2 A;  4M0I A;  1A43 A;  1M6E X;  3VRL C;  1YIJ P;  1M74 A;  5HGO A;  1QRJ A;  4WYM A;  4COP A;  2PEQ A;  3E2D A;  1E6J P;  1KQS O;  3H4E A;  3G26 A;  1K9M Q;  5JPA A;  2L6E A;  2XXM A;  1VQN P;  3B5I A;  4U0B A;  1YJW P;  1K73 Q;  4U0E A;  3DTJ A;  3CME P;  1IUQ A;  3G1I A;  1VQP P;  2E1M A;  1K8A Q;  1Q86 Q;  5F2K A;  3MGE A;  2KOD A;  1K30 A;  4PH0 A;  3G71 P;  4GR6 A;  3I56 P;  1RO2 A;  5BS2 A;  3H47 A;  3HZQ A;  2XV6 A;  1YJ9 P;  1S72 P;  2PEO A;  3DS1 A;  1PEU A;  2PEI A;  3G4S P;  3CCE P;  4QNB A;  3G21 A;  2OTJ P;  5I4T G;  1RO0 A;  1ZMB A;  1M90 Q;  3CC4 P;  3Q20 A;  2BUO A;  3P05 A;  2BHV A;  4XFZ A;  1W2B O;  1NJI Q;  1KD1 Q;  2Z44 A;  1YHQ P;  3CMA P;  1VQ5 P;  1VQL P;  2M8N A;  4U0C A;  4XRO A;  4U0F A;  4IPY A;  5F2N A;  3DS0 A;  4XRQ A;  5F2O A;  3CCJ P;  2QEX P;  2Z45 A;  1KC8 Q;  1VQ7 P;  4U0D A;  2BQ1 E;  3G28 A;  3CCQ P;  1RNI A;  3H0D A;  1Q7Y Q;  3CPW O;  1M6N A;  3G1G A;  2JYL A;  5HGN A;  1AUM A;  2CWO A;  5HGM A;  3CCR P;  1QVF O;  3DS4 A;  3G0V A;  3I55 P;  3CCS P;  2PEK A;  1PEO A;  3DS2 A;  2QA4 P;  1PEQ A;  3DS3 A;  1QVG O;  2LF4 A;  1JJ2 O;  2EFJ A;  1M1K Q;  2M8L A;  1N8R Q;  3HYB A;  2PEM A;  4XFY A;  3CC2 P;  3DPH A;  3CXC O;  4U0A A;  1Q82 Q;  3RG6 C;  3CCM P;  1Q81 Q;  2M8P A;  2XT1 A;  3CCU P;  1VQ8 P;  2ONT A;  3M1M A;  2JYG A;  3G29 A;  3CC7 P;  2OTL P;  1YJN P;  4COC A;  2P9X A;  4PH1 A;  2OAR A;  1EOQ A;  3DS5 A;  5DCK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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