3CXCO

The structure of an enhanced oxazolidinone inhibitor bound to the 50s ribosomal subunit of h. marismortui
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
143
structure length
143
Chain Sequence
TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
publication title Design at the atomic level: design of biaryloxazolidinones as potent orally active antibiotics.
pubmed doi rcsb
total genus 50
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2008-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01280 Ribosomal_L19e Ribosomal protein L19e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.60 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3cxcO02
1.10.1650.10 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 3cxcO01
1YJNP 1M90Q 2QA4P 1YI2P 1N8RQ 1JJ2O 1VQ4P 3CMEP 3I56P 3CMAP 1VQ9P 1VQLP 1S72P 1VQPP 1YJ9P 1KD1Q 1NJIQ 3CCRP 3CPWO 1YITP 3I55P 1K8AQ 1YHQP 1VQ7P 3CC4P 1VQOP 1W2BO 3CCMP 1K73Q 1VQ6P 1Q82Q 3CC7P 3CCUP 1QVGO 2OTJP 2QEXP 3CCQP 3CCJP 3CD6P 1VQNP 3OW2O 1KC8Q 1M1KQ 3CCLP 3CCEP 3CC2P 1Q81Q 1VQKP 1QVFO 3CCVP 3CXCO 1YJWP 3G6EP 1Q86Q 3G4SP 3CCSP 1YIJP 1KQSO 1K9MQ 2OTLP 1VQMP 1VQ8P 1Q7YQ 3G71P 1VQ5P
chains in the Genus database with same CATH superfamily
4PWVB 1YI2P 3Q20A 4IPYA 1K30A 4XROA 2K0XA 3RG2A 2LOLA 2KG6A 2GZJA 2GZIA 1VQNP 3G26A 4BPHA 2PEKA 2VLOA 4U0CA 4GR2A 2OTLP 1VQ8P 3G71P 2KGAA 3HZQA 4H2YC 2N98A 1NJIQ 3G29A 2LL8A 2M8NA 1DNYA 2FHSC 1PEUA 5KP6B 2K92A 2CWOA 2JB0A 1D1DA 2JQ4A 2XZ0D 2CGQA 2JU2A 1EOQA 2MVUA 2KOPA 1JJ2O 3CCRP 4MRTC 1GXGA 2EHTA 2BHVA 2BQ1E 5HGNA 2Z46A 1AUMA 2XV6A 2KOQA 2QNWA 2CG5B 3NY7B 3P05A 2WPTA 2KG8A 3DS2A 3M1MA 3DS4A 2K0DX 3GZLA 1IUQA 1YJNP 2KGCA 2KG9A 2VLQA 4QKOA 1VQ4P 1GXHA 3I56P 2LIUA 5CZDB 2GDXA 2AVAA 2XT1A 2PY8A 4UHPB 2GZGA 2GDYA 1VQOP 1K73Q 2CQ8A 2GDWA 2KGEA 2KODA 4QNBA 1YJWP 2K93A 3EJDA 2EG5A 1KD1Q 2FVAA 2JO0A 2FVEA 1YHQP 3CC4P 2DGYA 1W2BO 3DS3A 2FQ0A 2EIAA 4COCA 2M8PA 3DPHA 2LF4A 1GPJA 3CC2P 5BS1A 1M6EX 3NTEA 1Q81Q 3CCVP 3H47A 1AF8A 2JAZA 1M6NA 1VQLP 2N6ZA 5KP7B 3GZMA 2AFEA 3GJNA 2E1MA 1A43A 1ZNVA 5F2NA 4DG9A 3CCJP 1DV5A 2BUOA 5JPAA 3DTJA 2EFJA 1PEOA 1ACPA 3CC7P 1HY8A 2JBGA 3CCUP 2LMLA 1KC8Q 2VLPA 2X2BA 2CNRA 2N5IA 3CCSP 1RO2A 1T8KA 2PEMA 3H0DA 2KWLA 3RG6C 5HVCA 1X3OA 5HGMA 5BS2A 3CE7A 2PENA 4M0IA 1UJZA 1Q82Q 4H2WC 1NQ4A 1EMVA 2LPKA 2MR8A 4IZ6A 3HYBA 3H4EA 3DS1A 1KLPA 1F80D 4XRQA 1PEQA 4GR6A 4PXHB 1L0HA 1Q7YQ 4U0BA 5HV8A 3CMEP 1VQ9P 5HGLA 1QRJA 5EW5E 3U43A 1HQBA 4H2XC 2XZ1C 4NEOA 2JYLA 1BAJA 1ZMBA 1A8OA 1OR5A 2FADA 2MY5A 2KOOA 3B5IA 2LIWA 4U0EA 2KR5A 2PEQA 1VQMP 2K94A 3EJBA 1IMQA 4COPA 2AF8A 2L6EA 1VQPP 4PH1A 5EJDA 2N5HA 2VSQA 1VHNA 1QVGO 3MGEA 3G28A 2L4BA 3CXCO 2FAEA 3VRLC 2PEJA 3G1GA 2GZFA 5KP8B 2K5XA 3E2DA 4HKGA 1VKUA 3DS5A 4R0MA 5I4TG 3CPWO 2KOSA 1VQ7P 1M74A 4BPGA 1Z6MA 2JGPA 3CCEP 2JU1A 5DCKA 2L0QA 2P9XA 4U0AA 1M90Q 2QA4P 1RO0A 1FR2A 2Z45A 1MZ8A 1CEIA 3B4QA 2PEIA 2Z44A 3DS0A 2MR7A 3WBHA 4PH0A 2JYGA 2ONTA 2NO8A 2MVVA 3G0VA 2GYKA 1YIJP 2KW2A 3CMAP 1S72P 2LTEA 2PNGA 1EIAA 2FVFA 2K2QA 4F37A 2FQ2A 2OARA 2KGDA 1E0HA 5F2OA 1AYIA 1E6JP 2QEXP 2N50A 2VLNA 3GKLC 3CD6P 7CEIA 1M1KQ 2FACA 1L0IA 1QVFO 2XXMA 4BPFA 2MF4A 4CA3A 2PEOA 1N8RQ 2MD9A 2ERHA 4U0DA 2GZEA 1YJ9P 1BXIA 2DNWA 5HGOA 2N6YA 2LKIA 1VQKP 2K0YA 2ROQA 1KQSO 1RNIA 1K9MQ 3LMOA 3G1IA 1UNKA 2L9FA 5F2KA 3LRYA 4WYMA 1VQ6P 2FQ1A 4XFYA 4XFZA 3G4SP 2AFDA 4U0FA 1IMPA 4XFXA 1PEMA 1VQ5P 2KORA 3EJEA 2EHSA 2M5RA 1YITP 2M8LA 3I55P 3G21A 1K8AQ 3CCMP 2OTJP 3CCQP 3OW2O 3CCLP 3G6EP 1Q86Q 2L22A
chains in the Genus database with same CATH topology
4U0BA 1YI2P 3CMEP 2EG5A 3Q20A 4IPYA 3CMAP 1VQ9P 1S72P 1K30A 5HGLA 1QRJA 1KD1Q 1EIAA 4XROA 2JO0A 2OARA 2JYLA 1YHQP 1BAJA 3CC4P 2DGYA 1W2BO 5F2OA 1ZMBA 3DS3A 1E6JP 2QEXP 2EIAA 1A8OA 3CD6P 4COCA 2M8PA 1VQNP 1M1KQ 3DPHA 2LF4A 3G26A 3CC2P 5BS1A 1M6EX 3NTEA 1Q81Q 1QVFO 3CCVP 3H47A 2XXMA 2PEKA 3B5IA 4U0EA 4U0CA 4GR2A 2OTLP 2PEQA 1VQMP 1VQ8P 1M6NA 3G71P 1VQLP 2PEOA 1N8RQ 4COPA 3HZQA 4U0DA 2L6EA 1VQPP 1YJ9P 1NJIQ 4PH1A 3G29A 2M8NA 5HGOA 1PEUA 2E1MA 1A43A 2CWOA 1D1DA 1QVGO 3MGEA 5F2NA 3CCJP 2BUOA 3G28A 5JPAA 3DTJA 1VQKP 3CXCO 3VRLC 2PEJA 3G1GA 1KQSO 1RNIA 1K9MQ 1EOQA 1JJ2O 3G1IA 3E2DA 5F2KA 3LRYA 2EFJA 3CCRP 3DS5A 3CPWO 5I4TG 1PEOA 1VQ7P 2BHVA 4WYMA 1VQ6P 1M74A 3CC7P 2BQ1E 5HGNA 4XFYA 3CCUP 2Z46A 1AUMA 2XV6A 1KC8Q 3CCEP 4XFZA 3P05A 3DS2A 3G4SP 5DCKA 3CCSP 3M1MA 3DS4A 1RO2A 2P9XA 4U0FA 4U0AA 4XFXA 1IUQA 1VQ5P 1YJNP 1M90Q 1PEMA 2QA4P 1VQ4P 3I56P 2PEMA 3H0DA 1RO0A 3RG6C 2Z45A 2PEIA 5HGMA 1YITP 2Z44A 2XT1A 5BS2A 3DS0A 2PY8A 3G21A 2M8LA 3WBHA 3I55P 2PENA 1K8AQ 4PH0A 4M0IA 1VQOP 2JYGA 3CCMP 1K73Q 1Q82Q 2ONTA 2OTJP 3CCQP 3OW2O 3CCLP 2KODA 3HYBA 3H4EA 3DS1A 1PEQA 4QNBA 4XRQA 3G0VA 1YJWP 3G6EP 1Q86Q 1YIJP 4GR6A 1Q7YQ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJN P;  1M90 Q;  2QA4 P;  1YI2 P;  1N8R Q;  1JJ2 O;  1VQ4 P;  3CME P;  3I56 P;  3CMA P;  1VQ9 P;  1VQL P;  1S72 P;  1VQP P;  1YJ9 P;  1KD1 Q;  1NJI Q;  3CCR P;  3CPW O;  1YIT P;  3I55 P;  1K8A Q;  1YHQ P;  1VQ7 P;  3CC4 P;  1VQO P;  1W2B O;  3CCM P;  1K73 Q;  1VQ6 P;  1Q82 Q;  3CC7 P;  3CCU P;  1QVG O;  2OTJ P;  2QEX P;  3CCQ P;  3CCJ P;  3CD6 P;  1VQN P;  3OW2 O;  1KC8 Q;  1M1K Q;  3CCL P;  3CCE P;  3CC2 P;  1Q81 Q;  1VQK P;  1QVF O;  3CCV P;  3CXC O;  1YJW P;  3G6E P;  1Q86 Q;  3G4S P;  3CCS P;  1YIJ P;  1KQS O;  1K9M Q;  2OTL P;  1VQM P;  1VQ8 P;  1Q7Y Q;  3G71 P;  1VQ5 P; 
#chains in the Genus database with same CATH topology
 4PWV B;  1YI2 P;  3Q20 A;  4IPY A;  1K30 A;  4XRO A;  2K0X A;  3RG2 A;  2LOL A;  2KG6 A;  2GZJ A;  2GZI A;  1VQN P;  3G26 A;  4BPH A;  2PEK A;  2VLO A;  4U0C A;  4GR2 A;  2OTL P;  1VQ8 P;  3G71 P;  2KGA A;  3HZQ A;  4H2Y C;  2N98 A;  1NJI Q;  3G29 A;  2LL8 A;  2M8N A;  1DNY A;  2FHS C;  1PEU A;  5KP6 B;  2K92 A;  2CWO A;  2JB0 A;  1D1D A;  2JQ4 A;  2XZ0 D;  2CGQ A;  2JU2 A;  1EOQ A;  2MVU A;  2KOP A;  1JJ2 O;  3CCR P;  4MRT C;  1GXG A;  2EHT A;  2BHV A;  2BQ1 E;  5HGN A;  2Z46 A;  1AUM A;  2XV6 A;  2KOQ A;  2QNW A;  2CG5 B;  3NY7 B;  3P05 A;  2WPT A;  2KG8 A;  3DS2 A;  3M1M A;  3DS4 A;  2K0D X;  3GZL A;  1IUQ A;  1YJN P;  2KGC A;  2KG9 A;  2VLQ A;  4QKO A;  1VQ4 P;  1GXH A;  3I56 P;  2LIU A;  5CZD B;  2GDX A;  2AVA A;  2XT1 A;  2PY8 A;  4UHP B;  2GZG A;  2GDY A;  1VQO P;  1K73 Q;  2CQ8 A;  2GDW A;  2KGE A;  2KOD A;  4QNB A;  1YJW P;  2K93 A;  3EJD A;  2EG5 A;  1KD1 Q;  2FVA A;  2JO0 A;  2FVE A;  1YHQ P;  3CC4 P;  2DGY A;  1W2B O;  3DS3 A;  2FQ0 A;  2EIA A;  4COC A;  2M8P A;  3DPH A;  2LF4 A;  1GPJ A;  3CC2 P;  5BS1 A;  1M6E X;  3NTE A;  1Q81 Q;  3CCV P;  3H47 A;  1AF8 A;  2JAZ A;  1M6N A;  1VQL P;  2N6Z A;  5KP7 B;  3GZM A;  2AFE A;  3GJN A;  2E1M A;  1A43 A;  1ZNV A;  5F2N A;  4DG9 A;  3CCJ P;  1DV5 A;  2BUO A;  5JPA A;  3DTJ A;  2EFJ A;  1PEO A;  1ACP A;  3CC7 P;  1HY8 A;  2JBG A;  3CCU P;  2LML A;  1KC8 Q;  2VLP A;  2X2B A;  2CNR A;  2N5I A;  3CCS P;  1RO2 A;  1T8K A;  2PEM A;  3H0D A;  2KWL A;  3RG6 C;  5HVC A;  1X3O A;  5HGM A;  5BS2 A;  3CE7 A;  2PEN A;  4M0I A;  1UJZ A;  1Q82 Q;  4H2W C;  1NQ4 A;  1EMV A;  2LPK A;  2MR8 A;  4IZ6 A;  3HYB A;  3H4E A;  3DS1 A;  1KLP A;  1F80 D;  4XRQ A;  1PEQ A;  4GR6 A;  4PXH B;  1L0H A;  1Q7Y Q;  4U0B A;  5HV8 A;  3CME P;  1VQ9 P;  5HGL A;  1QRJ A;  5EW5 E;  3U43 A;  1HQB A;  4H2X C;  2XZ1 C;  4NEO A;  2JYL A;  1BAJ A;  1ZMB A;  1A8O A;  1OR5 A;  2FAD A;  2MY5 A;  2KOO A;  3B5I A;  2LIW A;  4U0E A;  2KR5 A;  2PEQ A;  1VQM P;  2K94 A;  3EJB A;  1IMQ A;  4COP A;  2AF8 A;  2L6E A;  1VQP P;  4PH1 A;  5EJD A;  2N5H A;  2VSQ A;  1VHN A;  1QVG O;  3MGE A;  3G28 A;  2L4B A;  3CXC O;  2FAE A;  3VRL C;  2PEJ A;  3G1G A;  2GZF A;  5KP8 B;  2K5X A;  3E2D A;  4HKG A;  1VKU A;  3DS5 A;  4R0M A;  5I4T G;  3CPW O;  2KOS A;  1VQ7 P;  1M74 A;  4BPG A;  1Z6M A;  2JGP A;  3CCE P;  2JU1 A;  5DCK A;  2L0Q A;  2P9X A;  4U0A A;  1M90 Q;  2QA4 P;  1RO0 A;  1FR2 A;  2Z45 A;  1MZ8 A;  1CEI A;  3B4Q A;  2PEI A;  2Z44 A;  3DS0 A;  2MR7 A;  3WBH A;  4PH0 A;  2JYG A;  2ONT A;  2NO8 A;  2MVV A;  3G0V A;  2GYK A;  1YIJ P;  2KW2 A;  3CMA P;  1S72 P;  2LTE A;  2PNG A;  1EIA A;  2FVF A;  2K2Q A;  4F37 A;  2FQ2 A;  2OAR A;  2KGD A;  1E0H A;  5F2O A;  1AYI A;  1E6J P;  2QEX P;  2N50 A;  2VLN A;  3GKL C;  3CD6 P;  7CEI A;  1M1K Q;  2FAC A;  1L0I A;  1QVF O;  2XXM A;  4BPF A;  2MF4 A;  4CA3 A;  2PEO A;  1N8R Q;  2MD9 A;  2ERH A;  4U0D A;  2GZE A;  1YJ9 P;  1BXI A;  2DNW A;  5HGO A;  2N6Y A;  2LKI A;  1VQK P;  2K0Y A;  2ROQ A;  1KQS O;  1RNI A;  1K9M Q;  3LMO A;  3G1I A;  1UNK A;  2L9F A;  5F2K A;  3LRY A;  4WYM A;  1VQ6 P;  2FQ1 A;  4XFY A;  4XFZ A;  3G4S P;  2AFD A;  4U0F A;  1IMP A;  4XFX A;  1PEM A;  1VQ5 P;  2KOR A;  3EJE A;  2EHS A;  2M5R A;  1YIT P;  2M8L A;  3I55 P;  3G21 A;  1K8A Q;  3CCM P;  2OTJ P;  3CCQ P;  3OW2 O;  3CCL P;  3G6E P;  1Q86 Q;  2L22 A; 
#chains in the Genus database with same CATH homology
 4U0B A;  1YI2 P;  3CME P;  2EG5 A;  3Q20 A;  4IPY A;  3CMA P;  1VQ9 P;  1S72 P;  1K30 A;  5HGL A;  1QRJ A;  1KD1 Q;  1EIA A;  4XRO A;  2JO0 A;  2OAR A;  2JYL A;  1YHQ P;  1BAJ A;  3CC4 P;  2DGY A;  1W2B O;  5F2O A;  1ZMB A;  3DS3 A;  1E6J P;  2QEX P;  2EIA A;  1A8O A;  3CD6 P;  4COC A;  2M8P A;  1VQN P;  1M1K Q;  3DPH A;  2LF4 A;  3G26 A;  3CC2 P;  5BS1 A;  1M6E X;  3NTE A;  1Q81 Q;  1QVF O;  3CCV P;  3H47 A;  2XXM A;  2PEK A;  3B5I A;  4U0E A;  4U0C A;  4GR2 A;  2OTL P;  2PEQ A;  1VQM P;  1VQ8 P;  1M6N A;  3G71 P;  1VQL P;  2PEO A;  1N8R Q;  4COP A;  3HZQ A;  4U0D A;  2L6E A;  1VQP P;  1YJ9 P;  1NJI Q;  4PH1 A;  3G29 A;  2M8N A;  5HGO A;  1PEU A;  2E1M A;  1A43 A;  2CWO A;  1D1D A;  1QVG O;  3MGE A;  5F2N A;  3CCJ P;  2BUO A;  3G28 A;  5JPA A;  3DTJ A;  1VQK P;  3CXC O;  3VRL C;  2PEJ A;  3G1G A;  1KQS O;  1RNI A;  1K9M Q;  1EOQ A;  1JJ2 O;  3G1I A;  3E2D A;  5F2K A;  3LRY A;  2EFJ A;  3CCR P;  3DS5 A;  3CPW O;  5I4T G;  1PEO A;  1VQ7 P;  2BHV A;  4WYM A;  1VQ6 P;  1M74 A;  3CC7 P;  2BQ1 E;  5HGN A;  4XFY A;  3CCU P;  2Z46 A;  1AUM A;  2XV6 A;  1KC8 Q;  3CCE P;  4XFZ A;  3P05 A;  3DS2 A;  3G4S P;  5DCK A;  3CCS P;  3M1M A;  3DS4 A;  1RO2 A;  2P9X A;  4U0F A;  4U0A A;  4XFX A;  1IUQ A;  1VQ5 P;  1YJN P;  1M90 Q;  1PEM A;  2QA4 P;  1VQ4 P;  3I56 P;  2PEM A;  3H0D A;  1RO0 A;  3RG6 C;  2Z45 A;  2PEI A;  5HGM A;  1YIT P;  2Z44 A;  2XT1 A;  5BS2 A;  3DS0 A;  2PY8 A;  3G21 A;  2M8L A;  3WBH A;  3I55 P;  2PEN A;  1K8A Q;  4PH0 A;  4M0I A;  1VQO P;  2JYG A;  3CCM P;  1K73 Q;  1Q82 Q;  2ONT A;  2OTJ P;  3CCQ P;  3OW2 O;  3CCL P;  2KOD A;  3HYB A;  3H4E A;  3DS1 A;  1PEQ A;  4QNB A;  4XRQ A;  3G0V A;  1YJW P;  3G6E P;  1Q86 Q;  1YIJ P;  4GR6 A;  1Q7Y Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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