The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
244
|
sequence length |
692
|
structure length |
679
|
Chain Sequence |
RVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQGAGAVYLHAHHPDILRFLDTKRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
pubmed doi rcsb |
| molecule keywords |
Ribonucleoside-diphosphate reductase 2 alpha chain
|
| molecule tags |
Oxidoreductase
|
| source organism |
Salmonella typhimurium
|
| total genus |
244
|
| structure length |
679
|
| sequence length |
692
|
| ec nomenclature |
ec
1.17.4.1: Ribonucleoside-diphosphate reductase. |
| pdb deposition date | 2003-05-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00317 | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain |
| A | PF02867 | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain |
| A | PF08343 | RNR_N | Ribonucleotide reductase N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | 50s Ribosomal Protein L19e, Chain O, domain 1 | 50s Ribosomal Protein L19e, Chain O, domain 1 | ||
| Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain |
#chains in the Genus database with same CATH superfamily 1QHM A; 1PEO A; 4X3V A; 1XJK A; 2BQ1 E; 4ERM A; 1H78 A; 1H7B A; 1R1R A; 2ZLF A; 2XAV A; 3S8C A; 1XJE A; 3HNF A; 1ZYZ A; 1MZO A; 3TB9 A; 1PEM A; 2YAJ A; 1HK8 A; 3R1R A; 4MTJ A; 3S8B A; 5CNV A; 3S87 A; 1H18 A; 1ZZD A; 5R1R A; 3O0N A; 2XAY A; 3HNC A; 1R9D A; 2Y8N A; 1XJN A; 2F3O A; 1CM5 A; 1H17 A; 5CNS A; 2CVS A; 3K8T A; 2CVY A; 2CVX A; 3RSR A; 7R1R A; 2EUD A; 1RLR A; 5CNT A; 3HND A; 2XO5 A; 4R1R A; 2X0X A; 3TBA A; 2R1R A; 1R8W A; 1H79 A; 3PFL A; 6R1R A; 1XJF A; 2CVV A; 5CNU A; 3O0O A; 2XAX A; 1XJM A; 1H16 A; 1XJJ A; 2XAP A; 2PFL A; 1PEQ A; 2CVU A; 2WGH A; 3S8A A; 1L1L A; 1PEU A; 2XAK A; 2XAW A; 2ZLG A; 2CVW A; 2XAZ A; 3HNE A; 2XO4 A; 2HA9 A; 3O0Q A; 1XJG A; 2CVT A; 1H7A A; #chains in the Genus database with same CATH topology 1VQ4 P; 1QHM A; 1KC8 Q; 1K8A Q; 1YJ9 P; 1PEO A; 4X3V A; 1XJK A; 2BQ1 E; 4ERM A; 3CCU P; 3CD6 P; 1H78 A; 1YJW P; 1H7B A; 1R1R A; 2ZLF A; 1VQN P; 5FAW A; 3CCS P; 3I56 P; 2QA4 P; 1YJN P; 2XAV A; 1XJE A; 3HNF A; 3S8C A; 1ZYZ A; 1MZO A; 3CME P; 1N8R Q; 1JJ2 O; 3CPW O; 3CCJ P; 1K9M Q; 3TB9 A; 5FAY A; 1PEM A; 1VQL P; 2YAJ A; 1HK8 A; 3CCM P; 3R1R A; 4MTJ A; 3S8B A; 1Q81 Q; 5CNV A; 1M90 Q; 3S87 A; 1H18 A; 1ZZD A; 5R1R A; 3O0N A; 2XAY A; 3HNC A; 1W2B O; 1Q7Y Q; 1KD1 Q; 5A0Z A; 1R9D A; 2Y8N A; 3CC7 P; 1XJN A; 2F3O A; 1VQK P; 1CM5 A; 1VQ7 P; 1H17 A; 3CC4 P; 5CNS A; 2CVS A; 3K8T A; 2CVY A; 1VQM P; 2CVX A; 3RSR A; 7R1R A; 2EUD A; 1RLR A; 1YI2 P; 5CNT A; 3CCV P; 1VQ8 P; 1K73 Q; 3HND A; 2XO5 A; 3CC2 P; 5A0U A; 4R1R A; 1QVF O; 3CCQ P; 2X0X A; 1QVG O; 3TBA A; 3CCE P; 1Q82 Q; 3CMA P; 2R1R A; 5KDP A; 1VQP P; 1R8W A; 1H79 A; 3CXC O; 3PFL A; 1S72 P; 6R1R A; 3CCR P; 2OTJ P; 3G71 P; 1Q86 Q; 1XJF A; 2CVV A; 2OTL P; 3O0O A; 2XAX A; 1M1K Q; 5CNU A; 1YIJ P; 1H16 A; 1XJJ A; 1XJM A; 2XAP A; 2PFL A; 1PEQ A; 2QEX P; 2CVU A; 5FAV A; 1VQ5 P; 1VQ6 P; 2WGH A; 3S8A A; 1L1L A; 1PEU A; 3G6E P; 1YIT P; 2XAK A; 2XAW A; 1VQO P; 2ZLG A; 2CVW A; 2XAZ A; 3CCL P; 3OW2 O; 3HNE A; 1KQS O; 2XO4 A; 3G4S P; 2HA9 A; 3O0Q A; 1XJG A; 2CVT A; 1YHQ P; 1VQ9 P; 3I55 P; 1NJI Q; 5FAU A; 1H7A A; #chains in the Genus database with same CATH homology 1VQ4 P; 1QHM A; 1KC8 Q; 1K8A Q; 1YJ9 P; 1PEO A; 4X3V A; 1XJK A; 2BQ1 E; 4ERM A; 3CCU P; 3CD6 P; 1H78 A; 1YJW P; 1H7B A; 1R1R A; 2ZLF A; 1VQN P; 5FAW A; 3CCS P; 3I56 P; 2QA4 P; 1YJN P; 2XAV A; 1XJE A; 3HNF A; 3S8C A; 1ZYZ A; 1MZO A; 3CME P; 1N8R Q; 1JJ2 O; 3CPW O; 3CCJ P; 1K9M Q; 3TB9 A; 5FAY A; 1PEM A; 1VQL P; 2YAJ A; 1HK8 A; 3CCM P; 3R1R A; 4MTJ A; 3S8B A; 1Q81 Q; 5CNV A; 1M90 Q; 3S87 A; 1H18 A; 1ZZD A; 5R1R A; 3O0N A; 2XAY A; 3HNC A; 1W2B O; 1Q7Y Q; 1KD1 Q; 5A0Z A; 1R9D A; 2Y8N A; 3CC7 P; 1XJN A; 2F3O A; 1VQK P; 1CM5 A; 1VQ7 P; 1H17 A; 3CC4 P; 5CNS A; 2CVS A; 3K8T A; 2CVY A; 1VQM P; 2CVX A; 3RSR A; 7R1R A; 2EUD A; 1RLR A; 1YI2 P; 5CNT A; 3CCV P; 1VQ8 P; 1K73 Q; 3HND A; 2XO5 A; 3CC2 P; 5A0U A; 4R1R A; 1QVF O; 3CCQ P; 2X0X A; 1QVG O; 3TBA A; 3CCE P; 1Q82 Q; 3CMA P; 2R1R A; 5KDP A; 1VQP P; 1R8W A; 1H79 A; 3CXC O; 3PFL A; 1S72 P; 6R1R A; 3CCR P; 2OTJ P; 3G71 P; 1Q86 Q; 1XJF A; 2CVV A; 2OTL P; 3O0O A; 2XAX A; 1M1K Q; 5CNU A; 1YIJ P; 1H16 A; 1XJJ A; 1XJM A; 2XAP A; 2PFL A; 1PEQ A; 2QEX P; 2CVU A; 5FAV A; 1VQ5 P; 1VQ6 P; 2WGH A; 3S8A A; 1L1L A; 1PEU A; 3G6E P; 1YIT P; 2XAK A; 2XAW A; 1VQO P; 2ZLG A; 2CVW A; 2XAZ A; 3CCL P; 3OW2 O; 3HNE A; 1KQS O; 2XO4 A; 3G4S P; 2HA9 A; 3O0Q A; 1XJG A; 2CVT A; 1YHQ P; 1VQ9 P; 3I55 P; 1NJI Q; 5FAU A; 1H7A A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
