1U9PA

Permuted single-chain arc
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
96
Chain Sequence
MPQFNLRWPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure
pubmed doi rcsb
molecule tags Unknown function
source organism Escherichia coli
molecule keywords pArc
total genus 36
structure length 96
sequence length 101
ec nomenclature
pdb deposition date 2004-08-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1u9pA00
2HZVA 4D8JA 1B01A 2BJ9A 1EA4A 2BJ1A 3FT7A 1QTGA 2GPEA 2CAXA 2JXHA 1Q5VA 1X93A 2BA3A 2WVFA 2WVDA 3VEBA 2WVBA 4HV0A 4ME7E 1MYKA 2CPGA 1U9PA 2HZAA 2JXGA 2K6LA 2WVCA 2K1OA 1P94A 1BAZA 2KELA 1BDTA 1PARA 2BNWA 3QOQA 2K29A 1BDVA 3VW4A 1ARRA 2K9IA 2CA9A 3LGHA 2CAJA 3VEAA 1MYLA 2RBFA 2BSQE 2H1OE 1B28A 3H87C 2BJ3A 1ARQA 3OD2A 2BJ7A 2WVEA 3GXQA 2BNZA 1MNTA 1IRQA 1NLAA 2AY0A 4FXEA 2BJ8A 2CADA 3FMTA 2JXIA 2K5JA
chains in the Genus database with same CATH superfamily
1B01A 4AAIA 2BJ1A 2UUWA 2CAXA 2JXHA 1Q5VA 3NNEA 2B43A 4QPXA 2H3AA 2K1OA 1BAZA 4NRTA 1SIWA 3NAIA 1SH2A 1MYLA 1ARQA 2AN7A 2CKWA 1MNTA 1IRQA 1NLAA 4MJWA 3H5XA 1EA4A 3LJPA 4LQ9A 1QTGA 1X93A 2WVDA 2JBVA 3UR0A 4ME7E 2CPGA 2K6LA 1PARA 2BNWA 2K29A 2WK4A 1ARRA 2K9IA 2CA9A 3LGHA 3VEAA 2BSQE 2H1OE 1B28A 3NAHA 3H87C 3NO7A 2BJ3A 3OD2A 1Q16A 3BSOA 3SFUA 3GXQA 3BSNA 4FXEA 2BJ8A 4O4RA 1OHNA 2Q2KA 4LRVA 2K5JA 1SH3A 4D8JA 2BJ9A 2WVFA 3G5OA 3H5YA 3VEBA 2WVBA 4HV0A 3QIDA 1U9PA 2HZAA 1BDTA 2KELA 3QOQA 1BDVA 2ADLA 2CAJA 2UUTA 2BJ7A 3UQSA 3IR7A 2CADA 3FMTA 2JXIA 2HZVA 3FT7A 2GPEA 2KKEA 2BA3A 3UPFA 1SH0A 4LQ3A 4NRUA 1MYKA 3SFGA 2WVCA 2JXGA 1P94A 3VW4A 2A2BA 2RBFA 2WVEA 2BNZA 2AY0A 2KOEA 1OG7A
chains in the Genus database with same CATH topology
2HZVA 4D8JA 1B01A 2BJ9A 1EA4A 2BJ1A 3FT7A 1QTGA 2GPEA 2CAXA 2JXHA 1Q5VA 1X93A 2BA3A 2WVFA 2WVDA 3VEBA 2WVBA 4HV0A 4ME7E 1MYKA 2CPGA 1U9PA 2HZAA 2JXGA 2K6LA 2WVCA 2K1OA 1P94A 1BAZA 2KELA 1BDTA 1PARA 2BNWA 3QOQA 2K29A 1BDVA 3VW4A 1ARRA 2K9IA 2CA9A 3LGHA 2CAJA 3VEAA 1MYLA 2RBFA 2BSQE 2H1OE 1B28A 3H87C 2BJ3A 1ARQA 3OD2A 2BJ7A 2WVEA 3GXQA 2BNZA 1MNTA 1IRQA 1NLAA 2AY0A 4FXEA 2BJ8A 2CADA 3FMTA 2JXIA 2K5JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HZV A;  4D8J A;  1B01 A;  2BJ9 A;  1EA4 A;  2BJ1 A;  3FT7 A;  1QTG A;  2GPE A;  2CAX A;  2JXH A;  1Q5V A;  1X93 A;  2BA3 A;  2WVF A;  2WVD A;  3VEB A;  2WVB A;  4HV0 A;  4ME7 E;  1MYK A;  2CPG A;  1U9P A;  2HZA A;  2JXG A;  2K6L A;  2WVC A;  2K1O A;  1P94 A;  1BAZ A;  2KEL A;  1BDT A;  1PAR A;  2BNW A;  3QOQ A;  2K29 A;  1BDV A;  3VW4 A;  1ARR A;  2K9I A;  2CA9 A;  3LGH A;  2CAJ A;  3VEA A;  1MYL A;  2RBF A;  2BSQ E;  2H1O E;  1B28 A;  3H87 C;  2BJ3 A;  1ARQ A;  3OD2 A;  2BJ7 A;  2WVE A;  3GXQ A;  2BNZ A;  1MNT A;  1IRQ A;  1NLA A;  2AY0 A;  4FXE A;  2BJ8 A;  2CAD A;  3FMT A;  2JXI A;  2K5J A; 
#chains in the Genus database with same CATH topology
 1B01 A;  4AAI A;  2BJ1 A;  2UUW A;  2CAX A;  2JXH A;  1Q5V A;  3NNE A;  2B43 A;  4QPX A;  2H3A A;  2K1O A;  1BAZ A;  4NRT A;  1SIW A;  3NAI A;  1SH2 A;  1MYL A;  1ARQ A;  2AN7 A;  2CKW A;  1MNT A;  1IRQ A;  1NLA A;  4MJW A;  3H5X A;  1EA4 A;  3LJP A;  4LQ9 A;  1QTG A;  1X93 A;  2WVD A;  2JBV A;  3UR0 A;  4ME7 E;  2CPG A;  2K6L A;  1PAR A;  2BNW A;  2K29 A;  2WK4 A;  1ARR A;  2K9I A;  2CA9 A;  3LGH A;  3VEA A;  2BSQ E;  2H1O E;  1B28 A;  3NAH A;  3H87 C;  3NO7 A;  2BJ3 A;  3OD2 A;  1Q16 A;  3BSO A;  3SFU A;  3GXQ A;  3BSN A;  4FXE A;  2BJ8 A;  4O4R A;  1OHN A;  2Q2K A;  4LRV A;  2K5J A;  1SH3 A;  4D8J A;  2BJ9 A;  2WVF A;  3G5O A;  3H5Y A;  3VEB A;  2WVB A;  4HV0 A;  3QID A;  1U9P A;  2HZA A;  1BDT A;  2KEL A;  3QOQ A;  1BDV A;  2ADL A;  2CAJ A;  2UUT A;  2BJ7 A;  3UQS A;  3IR7 A;  2CAD A;  3FMT A;  2JXI A;  2HZV A;  3FT7 A;  2GPE A;  2KKE A;  2BA3 A;  3UPF A;  1SH0 A;  4LQ3 A;  4NRU A;  1MYK A;  3SFG A;  2WVC A;  2JXG A;  1P94 A;  3VW4 A;  2A2B A;  2RBF A;  2WVE A;  2BNZ A;  2AY0 A;  2KOE A;  1OG7 A; 
#chains in the Genus database with same CATH homology
 2HZV A;  4D8J A;  1B01 A;  2BJ9 A;  1EA4 A;  2BJ1 A;  3FT7 A;  1QTG A;  2GPE A;  2CAX A;  2JXH A;  1Q5V A;  1X93 A;  2BA3 A;  2WVF A;  2WVD A;  3VEB A;  2WVB A;  4HV0 A;  4ME7 E;  1MYK A;  2CPG A;  1U9P A;  2HZA A;  2JXG A;  2K6L A;  2WVC A;  2K1O A;  1P94 A;  1BAZ A;  2KEL A;  1BDT A;  1PAR A;  2BNW A;  3QOQ A;  2K29 A;  1BDV A;  3VW4 A;  1ARR A;  2K9I A;  2CA9 A;  3LGH A;  2CAJ A;  3VEA A;  1MYL A;  2RBF A;  2BSQ E;  2H1O E;  1B28 A;  3H87 C;  2BJ3 A;  1ARQ A;  3OD2 A;  2BJ7 A;  2WVE A;  3GXQ A;  2BNZ A;  1MNT A;  1IRQ A;  1NLA A;  2AY0 A;  4FXE A;  2BJ8 A;  2CAD A;  3FMT A;  2JXI A;  2K5J A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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