1X93 | Genus

Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	11
sequence length	43
structure length	43
Chain Sequence	TRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKALRKIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Helicobacter pylori
publication title	Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators. pubmed doi rcsb
molecule keywords	hypothetical protein HP0222
total genus	11
structure length	43
sequence length	43
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-08-19

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	1x93A01

2RBFA 2AY0A 2KELA 2BNWA 2JXGA 1ARQA 3LGHA 2CADA 2BSQE 2K1OA 2GPEA 2CAXA 4ME7E 3QOQA 1EA4A 1PARA 2JXIA 3VEAA 4HV0A 2H1OE 2K29A 3VW4A 2K9IA 2WVDA 2K5JA 1U9PA 2CA9A 2K6LA 1MNTA 2JXHA 1P94A 2BA3A 2BJ3A 4FXEA 3FMTA 1QTGA 2BJ7A 2CPGA 1NLAA 2CAJA 1B01A 2HZAA 1B28A 1X93A 3OD2A 2WVFA 2WVCA 4D8JA 1MYKA 3GXQA 1BDTA 2BJ8A 1BDVA 1BAZA 2BJ9A 1ARRA 3VEBA 2BNZA 2HZVA 1IRQA 2BJ1A 3FT7A 3H87C 1MYLA 1Q5VA 2WVEA 2WVBA
chains in the Genus database with same CATH superfamily

2RBFA 2UUWA 2CAXA 3UR0A 2CKWA 2JXIA 4HV0A 2K29A 3H5YA 1P94A 1B01A 4LRVA 3OD2A 2WVFA 3UQSA 2BJ9A 1ARRA 2BJ1A 3H87C 2AN7A 4O4RA 2WVBA 2ADLA 2AY0A 3UPFA 3NNEA 3NO7A 3VEAA 2A2BA 3G5OA 3VW4A 3LJPA 2CA9A 1MNTA 1OG7A 4FXEA 2BJ3A 3FMTA 2CPGA 1OHNA 3SFUA 1BAZA 2HZVA 3BSOA 1IRQA 1MYLA 1Q5VA 3BSNA 3SFGA 2H3AA 2KELA 2BNWA 2JXGA 1SH2A 1ARQA 3LGHA 2CADA 2BSQE 2K1OA 3QIDA 2GPEA 4NRUA 1EA4A 2H1OE 4MJWA 4LQ9A 2K9IA 2WVDA 3IR7A 2Q2KA 3NAIA 1X93A 1BDTA 1MYKA 3VEBA 2UUTA 3GXQA 1Q16A 4AAIA 2KKEA 4ME7E 3QOQA 2WK4A 1PARA 4QPXA 2K5JA 1U9PA 2K6LA 2KOEA 2JXHA 2BA3A 1QTGA 2BJ7A 4NRTA 1NLAA 2CAJA 2HZAA 1B28A 4D8JA 2WVCA 2BJ8A 1BDVA 2B43A 1SH0A 2JBVA 3NAHA 2BNZA 1SIWA 3FT7A 4LQ3A 1SH3A 2WVEA 3H5XA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2RBF A;  2AY0 A;  2KEL A;  2BNW A;  2JXG A;  1ARQ A;  3LGH A;  2CAD A;  2BSQ E;  2K1O A;  2GPE A;  2CAX A;  4ME7 E;  3QOQ A;  1EA4 A;  1PAR A;  2JXI A;  3VEA A;  4HV0 A;  2H1O E;  2K29 A;  3VW4 A;  2K9I A;  2WVD A;  2K5J A;  1U9P A;  2CA9 A;  2K6L A;  1MNT A;  2JXH A;  1P94 A;  2BA3 A;  2BJ3 A;  4FXE A;  3FMT A;  1QTG A;  2BJ7 A;  2CPG A;  1NLA A;  2CAJ A;  1B01 A;  2HZA A;  1B28 A;  1X93 A;  3OD2 A;  2WVF A;  2WVC A;  4D8J A;  1MYK A;  3GXQ A;  1BDT A;  2BJ8 A;  1BDV A;  1BAZ A;  2BJ9 A;  1ARR A;  3VEB A;  2BNZ A;  2HZV A;  1IRQ A;  2BJ1 A;  3FT7 A;  3H87 C;  1MYL A;  1Q5V A;  2WVE A;  2WVB A; 
#chains in the Genus database with same CATH topology
 2RBF A;  2UUW A;  2CAX A;  3UR0 A;  2CKW A;  2JXI A;  4HV0 A;  2K29 A;  3H5Y A;  1P94 A;  1B01 A;  4LRV A;  3OD2 A;  2WVF A;  3UQS A;  2BJ9 A;  1ARR A;  2BJ1 A;  3H87 C;  2AN7 A;  4O4R A;  2WVB A;  2ADL A;  2AY0 A;  3UPF A;  3NNE A;  3NO7 A;  3VEA A;  2A2B A;  3G5O A;  3VW4 A;  3LJP A;  2CA9 A;  1MNT A;  1OG7 A;  4FXE A;  2BJ3 A;  3FMT A;  2CPG A;  1OHN A;  3SFU A;  1BAZ A;  2HZV A;  3BSO A;  1IRQ A;  1MYL A;  1Q5V A;  3BSN A;  3SFG A;  2H3A A;  2KEL A;  2BNW A;  2JXG A;  1SH2 A;  1ARQ A;  3LGH A;  2CAD A;  2BSQ E;  2K1O A;  3QID A;  2GPE A;  4NRU A;  1EA4 A;  2H1O E;  4MJW A;  4LQ9 A;  2K9I A;  2WVD A;  3IR7 A;  2Q2K A;  3NAI A;  1X93 A;  1BDT A;  1MYK A;  3VEB A;  2UUT A;  3GXQ A;  1Q16 A;  4AAI A;  2KKE A;  4ME7 E;  3QOQ A;  2WK4 A;  1PAR A;  4QPX A;  2K5J A;  1U9P A;  2K6L A;  2KOE A;  2JXH A;  2BA3 A;  1QTG A;  2BJ7 A;  4NRT A;  1NLA A;  2CAJ A;  2HZA A;  1B28 A;  4D8J A;  2WVC A;  2BJ8 A;  1BDV A;  2B43 A;  1SH0 A;  2JBV A;  3NAH A;  2BNZ A;  1SIW A;  3FT7 A;  4LQ3 A;  1SH3 A;  2WVE A;  3H5X A; 
#chains in the Genus database with same CATH homology
 2RBF A;  2AY0 A;  2KEL A;  2BNW A;  2JXG A;  1ARQ A;  3LGH A;  2CAD A;  2BSQ E;  2K1O A;  2GPE A;  2CAX A;  4ME7 E;  3QOQ A;  1EA4 A;  1PAR A;  2JXI A;  3VEA A;  4HV0 A;  2H1O E;  2K29 A;  3VW4 A;  2K9I A;  2WVD A;  2K5J A;  1U9P A;  2CA9 A;  2K6L A;  1MNT A;  2JXH A;  1P94 A;  2BA3 A;  2BJ3 A;  4FXE A;  3FMT A;  1QTG A;  2BJ7 A;  2CPG A;  1NLA A;  2CAJ A;  1B01 A;  2HZA A;  1B28 A;  1X93 A;  3OD2 A;  2WVF A;  2WVC A;  4D8J A;  1MYK A;  3GXQ A;  1BDT A;  2BJ8 A;  1BDV A;  1BAZ A;  2BJ9 A;  1ARR A;  3VEB A;  2BNZ A;  2HZV A;  1IRQ A;  2BJ1 A;  3FT7 A;  3H87 C;  1MYL A;  1Q5V A;  2WVE A;  2WVB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1X93A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN