2A2BA

Curvacin a
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
41
structure length
41
Chain Sequence
ARSYGNGVYCNNKKCWVNRGEATQSIIGGMISGWASGLAGM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide curvacin A
pubmed doi rcsb
molecule tags Antibiotic
molecule keywords Bacteriocin curvacin A
total genus 7
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2005-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01721 Bacteriocin_II Class II bacteriocin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.30 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 2a2bA00
1OHNA 2A2BA 1OG7A
chains in the Genus database with same CATH superfamily
4O4RA 1B28A 3LGHA 4LQ3A 1Q5VA 2BJ1A 4FXEA 4LRVA 1MNTA 1ARQA 2WVFA 3VW4A 3VEAA 3LJPA 1PARA 3G5OA 2K9IA 4HV0A 3NNEA 2BNZA 3GXQA 3IR7A 2WK4A 1P94A 3NO7A 1Q16A 1B01A 1SIWA 2BJ3A 2BNWA 2CA9A 2RBFA 1IRQA 2KELA 4QPXA 2CKWA 4AAIA 3FT7A 2UUWA 2WVBA 3BSNA 2AY0A 3H87C 3SFUA 2CAXA 3NAHA 4LQ9A 1BDVA 1EA4A 3H5XA 1U9PA 2BSQE 4MJWA 2JXGA 2GPEA 1MYLA 2HZAA 1SH0A 1QTGA 2CAJA 2KKEA 4ME7E 1X93A 2BJ9A 1OG7A 1BDTA 2ADLA 2K29A 2KOEA 1MYKA 2WVCA 3QIDA 2HZVA 4NRUA 3QOQA 2JXHA 3NAIA 2WVEA 2CADA 3BSOA 3H5YA 2K6LA 2H1OE 1OHNA 2BJ8A 2Q2KA 1SH3A 2UUTA 2BJ7A 1SH2A 2H3AA 2B43A 4NRTA 1BAZA 3FMTA 3OD2A 2JBVA 2K5JA 1NLAA 2BA3A 2K1OA 3UQSA 3UPFA 2WVDA 1ARRA 2A2BA 2CPGA 3VEBA 2JXIA 3SFGA 3UR0A 2AN7A 4D8JA
chains in the Genus database with same CATH topology
1SIWA 4LQ9A 4O4RA 3H5XA 4LQ3A 1SH2A 4MJWA 2H3AA 2B43A 4NRTA 4LRVA 1SH0A 2KKEA 2JBVA 1OG7A 4QPXA 2CKWA 2ADLA 2KOEA 3LJPA 3G5OA 4AAIA 3UQSA 3UPFA 2UUWA 3NAHA 3QIDA 3NNEA 2A2BA 4NRUA 3NAIA 3BSNA 3BSOA 3IR7A 2WK4A 3SFGA 3SFUA 3H5YA 3NO7A 1OHNA 3UR0A 2Q2KA 1SH3A 1Q16A 2AN7A 2UUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OHN A;  2A2B A;  1OG7 A; 
#chains in the Genus database with same CATH topology
 4O4R A;  1B28 A;  3LGH A;  4LQ3 A;  1Q5V A;  2BJ1 A;  4FXE A;  4LRV A;  1MNT A;  1ARQ A;  2WVF A;  3VW4 A;  3VEA A;  3LJP A;  1PAR A;  3G5O A;  2K9I A;  4HV0 A;  3NNE A;  2BNZ A;  3GXQ A;  3IR7 A;  2WK4 A;  1P94 A;  3NO7 A;  1Q16 A;  1B01 A;  1SIW A;  2BJ3 A;  2BNW A;  2CA9 A;  2RBF A;  1IRQ A;  2KEL A;  4QPX A;  2CKW A;  4AAI A;  3FT7 A;  2UUW A;  2WVB A;  3BSN A;  2AY0 A;  3H87 C;  3SFU A;  2CAX A;  3NAH A;  4LQ9 A;  1BDV A;  1EA4 A;  3H5X A;  1U9P A;  2BSQ E;  4MJW A;  2JXG A;  2GPE A;  1MYL A;  2HZA A;  1SH0 A;  1QTG A;  2CAJ A;  2KKE A;  4ME7 E;  1X93 A;  2BJ9 A;  1OG7 A;  1BDT A;  2ADL A;  2K29 A;  2KOE A;  1MYK A;  2WVC A;  3QID A;  2HZV A;  4NRU A;  3QOQ A;  2JXH A;  3NAI A;  2WVE A;  2CAD A;  3BSO A;  3H5Y A;  2K6L A;  2H1O E;  1OHN A;  2BJ8 A;  2Q2K A;  1SH3 A;  2UUT A;  2BJ7 A;  1SH2 A;  2H3A A;  2B43 A;  4NRT A;  1BAZ A;  3FMT A;  3OD2 A;  2JBV A;  2K5J A;  1NLA A;  2BA3 A;  2K1O A;  3UQS A;  3UPF A;  2WVD A;  1ARR A;  2A2B A;  2CPG A;  3VEB A;  2JXI A;  3SFG A;  3UR0 A;  2AN7 A;  4D8J A; 
#chains in the Genus database with same CATH homology
 1SIW A;  4LQ9 A;  4O4R A;  3H5X A;  4LQ3 A;  1SH2 A;  4MJW A;  2H3A A;  2B43 A;  4NRT A;  4LRV A;  1SH0 A;  2KKE A;  2JBV A;  1OG7 A;  4QPX A;  2CKW A;  2ADL A;  2KOE A;  3LJP A;  3G5O A;  4AAI A;  3UQS A;  3UPF A;  2UUW A;  3NAH A;  3QID A;  3NNE A;  2A2B A;  4NRU A;  3NAI A;  3BSN A;  3BSO A;  3IR7 A;  2WK4 A;  3SFG A;  3SFU A;  3H5Y A;  3NO7 A;  1OHN A;  3UR0 A;  2Q2K A;  1SH3 A;  1Q16 A;  2AN7 A;  2UUT A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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