2A2B | Genus

Total Genus 7

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	41
structure length	41
Chain Sequence	ARSYGNGVYCNNKKCWVNRGEATQSIIGGMISGWASGLAGM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antibiotic
publication title	Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide curvacin A pubmed doi rcsb
molecule keywords	Bacteriocin curvacin A
total genus	7
structure length	41
sequence length	41
ec nomenclature
pdb deposition date	2005-06-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01721	Bacteriocin_II	Class II bacteriocin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.30	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	2a2bA00

2A2BA 1OHNA 1OG7A
chains in the Genus database with same CATH superfamily

4NRTA 3H87C 1NLAA 3H5XA 3UR0A 2BJ1A 3OD2A 2BA3A 2CA9A 2UUWA 2JXGA 2WVDA 2WVFA 3NO7A 3BSOA 1PARA 3IR7A 1OG7A 2BNZA 1Q16A 2HZAA 2CAJA 2UUTA 3FMTA 1B28A 2WVEA 1SH0A 2K9IA 1BAZA 3LGHA 2K5JA 2BJ9A 4QPXA 4LQ3A 2BJ7A 3UPFA 2BJ3A 2JXIA 1MYLA 2K29A 1U9PA 3SFGA 2AN7A 4LRVA 4NRUA 1ARQA 2CPGA 3FT7A 2AY0A 3VEAA 2KKEA 1X93A 2KOEA 4HV0A 1P94A 4LQ9A 1ARRA 2BSQE 2JXHA 2Q2KA 3UQSA 1SH3A 2H1OE 3BSNA 2K6LA 2A2BA 2WVCA 2CADA 3GXQA 2B43A 3VEBA 4D8JA 1EA4A 1Q5VA 3SFUA 4AAIA 4MJWA 1IRQA 1MNTA 2CKWA 2JBVA 1OHNA 3H5YA 3LJPA 1SH2A 4ME7E 2BNWA 1B01A 1BDTA 2GPEA 1SIWA 3QIDA 2K1OA 3G5OA 1QTGA 2RBFA 2H3AA 2WK4A 1BDVA 2CAXA 2WVBA 3QOQA 2KELA 3NAHA 2HZVA 3NNEA 2ADLA 4FXEA 3NAIA 4O4RA 2BJ8A 3VW4A 1MYKA
chains in the Genus database with same CATH topology

3BSNA 2A2BA 4QPXA 4LQ3A 4NRTA 3H5XA 3UR0A 1SIWA 3UPFA 2B43A 3QIDA 3G5OA 2UUWA 2H3AA 2WK4A 3NO7A 3SFGA 2AN7A 4LRVA 4NRUA 3BSOA 3IR7A 1OG7A 3SFUA 3NAHA 4MJWA 4AAIA 1Q16A 2KKEA 2KOEA 2CKWA 2JBVA 1OHNA 2UUTA 3NNEA 2ADLA 4LQ9A 3H5YA 3NAIA 4O4RA 3LJPA 1SH2A 1SH0A 2Q2KA 3UQSA 1SH3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2A2B A;  1OHN A;  1OG7 A; 
#chains in the Genus database with same CATH topology
 4NRT A;  3H87 C;  1NLA A;  3H5X A;  3UR0 A;  2BJ1 A;  3OD2 A;  2BA3 A;  2CA9 A;  2UUW A;  2JXG A;  2WVD A;  2WVF A;  3NO7 A;  3BSO A;  1PAR A;  3IR7 A;  1OG7 A;  2BNZ A;  1Q16 A;  2HZA A;  2CAJ A;  2UUT A;  3FMT A;  1B28 A;  2WVE A;  1SH0 A;  2K9I A;  1BAZ A;  3LGH A;  2K5J A;  2BJ9 A;  4QPX A;  4LQ3 A;  2BJ7 A;  3UPF A;  2BJ3 A;  2JXI A;  1MYL A;  2K29 A;  1U9P A;  3SFG A;  2AN7 A;  4LRV A;  4NRU A;  1ARQ A;  2CPG A;  3FT7 A;  2AY0 A;  3VEA A;  2KKE A;  1X93 A;  2KOE A;  4HV0 A;  1P94 A;  4LQ9 A;  1ARR A;  2BSQ E;  2JXH A;  2Q2K A;  3UQS A;  1SH3 A;  2H1O E;  3BSN A;  2K6L A;  2A2B A;  2WVC A;  2CAD A;  3GXQ A;  2B43 A;  3VEB A;  4D8J A;  1EA4 A;  1Q5V A;  3SFU A;  4AAI A;  4MJW A;  1IRQ A;  1MNT A;  2CKW A;  2JBV A;  1OHN A;  3H5Y A;  3LJP A;  1SH2 A;  4ME7 E;  2BNW A;  1B01 A;  1BDT A;  2GPE A;  1SIW A;  3QID A;  2K1O A;  3G5O A;  1QTG A;  2RBF A;  2H3A A;  2WK4 A;  1BDV A;  2CAX A;  2WVB A;  3QOQ A;  2KEL A;  3NAH A;  2HZV A;  3NNE A;  2ADL A;  4FXE A;  3NAI A;  4O4R A;  2BJ8 A;  3VW4 A;  1MYK A; 
#chains in the Genus database with same CATH homology
 3BSN A;  2A2B A;  4QPX A;  4LQ3 A;  4NRT A;  3H5X A;  3UR0 A;  1SIW A;  3UPF A;  2B43 A;  3QID A;  3G5O A;  2UUW A;  2H3A A;  2WK4 A;  3NO7 A;  3SFG A;  2AN7 A;  4LRV A;  4NRU A;  3BSO A;  3IR7 A;  1OG7 A;  3SFU A;  3NAH A;  4MJW A;  4AAI A;  1Q16 A;  2KKE A;  2KOE A;  2CKW A;  2JBV A;  1OHN A;  2UUT A;  3NNE A;  2ADL A;  4LQ9 A;  3H5Y A;  3NAI A;  4O4R A;  3LJP A;  1SH2 A;  1SH0 A;  2Q2K A;  3UQS A;  1SH3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2A2BA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations