2BNW | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	49
structure length	49
Chain Sequence	DIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna-binding/regulatory protein
source organism	Streptococcus pyogenes
publication title	Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription. pubmed doi rcsb
molecule keywords	ORF OMEGA
total genus	13
structure length	49
sequence length	49
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2005-04-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	2bnwA00

2HZAA 2WVEA 2CADA 3H87C 2JXGA 3OD2A 2BNWA 2K29A 1IRQA 1PARA 3FT7A 3LGHA 2K5JA 2WVBA 1B01A 1EA4A 2GPEA 1BDTA 2BA3A 4D8JA 2BSQE 1ARQA 2BJ3A 2CPGA 4HV0A 2BNZA 1Q5VA 3VEAA 2JXHA 2BJ1A 2BJ8A 3GXQA 2JXIA 2BJ7A 2H1OE 2HZVA 1B28A 4FXEA 2K9IA 2WVCA 1ARRA 3VEBA 2CAJA 1BDVA 3FMTA 1MYKA 2WVFA 4ME7E 1MYLA 2AY0A 1X93A 1QTGA 2K1OA 3QOQA 1P94A 2K6LA 1BAZA 1U9PA 2CA9A 1NLAA 3VW4A 1MNTA 2BJ9A 2KELA 2WVDA 2RBFA 2CAXA
chains in the Genus database with same CATH superfamily

2H3AA 3NAHA 3H5YA 2BA3A 2BJ3A 4HV0A 2UUTA 1Q5VA 2JXHA 2WVCA 2CAJA 4QPXA 2AY0A 1QTGA 4LQ3A 1P94A 1BAZA 3NNEA 2AN7A 2CA9A 2BJ9A 2KELA 1SH3A 2HZVA 3NAIA 2WVEA 3H5XA 3UR0A 2BNWA 1PARA 1B01A 2WVBA 1ARQA 2CPGA 2BJ1A 2BJ8A 2JXIA 2KOEA 1OG7A 1BDVA 3IR7A 2WVFA 1MYLA 1OHNA 2K6LA 3G5OA 1U9PA 1NLAA 3VW4A 3SFUA 1MNTA 3SFGA 2RBFA 2HZAA 3H87C 2CADA 3OD2A 2K29A 1IRQA 2KKEA 2K5JA 1BDTA 2UUWA 4NRUA 3VEAA 2A2BA 4LRVA 3GXQA 2B43A 1B28A 2K9IA 1ARRA 1SH0A 3VEBA 1SIWA 3FMTA 1MYKA 4MJWA 4NRTA 2CKWA 1X93A 2K1OA 4O4RA 3QOQA 3NO7A 2ADLA 3QIDA 2JBVA 1SH2A 2WVDA 2JXGA 3BSOA 3FT7A 3LGHA 1EA4A 2GPEA 4D8JA 2BSQE 2WK4A 2BNZA 1Q16A 3LJPA 2BJ7A 2H1OE 4AAIA 3UPFA 4FXEA 4ME7E 4LQ9A 2Q2KA 3BSNA 2CAXA 3UQSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HZA A;  2WVE A;  2CAD A;  3H87 C;  2JXG A;  3OD2 A;  2BNW A;  2K29 A;  1IRQ A;  1PAR A;  3FT7 A;  3LGH A;  2K5J A;  2WVB A;  1B01 A;  1EA4 A;  2GPE A;  1BDT A;  2BA3 A;  4D8J A;  2BSQ E;  1ARQ A;  2BJ3 A;  2CPG A;  4HV0 A;  2BNZ A;  1Q5V A;  3VEA A;  2JXH A;  2BJ1 A;  2BJ8 A;  3GXQ A;  2JXI A;  2BJ7 A;  2H1O E;  2HZV A;  1B28 A;  4FXE A;  2K9I A;  2WVC A;  1ARR A;  3VEB A;  2CAJ A;  1BDV A;  3FMT A;  1MYK A;  2WVF A;  4ME7 E;  1MYL A;  2AY0 A;  1X93 A;  1QTG A;  2K1O A;  3QOQ A;  1P94 A;  2K6L A;  1BAZ A;  1U9P A;  2CA9 A;  1NLA A;  3VW4 A;  1MNT A;  2BJ9 A;  2KEL A;  2WVD A;  2RBF A;  2CAX A; 
#chains in the Genus database with same CATH topology
 2H3A A;  3NAH A;  3H5Y A;  2BA3 A;  2BJ3 A;  4HV0 A;  2UUT A;  1Q5V A;  2JXH A;  2WVC A;  2CAJ A;  4QPX A;  2AY0 A;  1QTG A;  4LQ3 A;  1P94 A;  1BAZ A;  3NNE A;  2AN7 A;  2CA9 A;  2BJ9 A;  2KEL A;  1SH3 A;  2HZV A;  3NAI A;  2WVE A;  3H5X A;  3UR0 A;  2BNW A;  1PAR A;  1B01 A;  2WVB A;  1ARQ A;  2CPG A;  2BJ1 A;  2BJ8 A;  2JXI A;  2KOE A;  1OG7 A;  1BDV A;  3IR7 A;  2WVF A;  1MYL A;  1OHN A;  2K6L A;  3G5O A;  1U9P A;  1NLA A;  3VW4 A;  3SFU A;  1MNT A;  3SFG A;  2RBF A;  2HZA A;  3H87 C;  2CAD A;  3OD2 A;  2K29 A;  1IRQ A;  2KKE A;  2K5J A;  1BDT A;  2UUW A;  4NRU A;  3VEA A;  2A2B A;  4LRV A;  3GXQ A;  2B43 A;  1B28 A;  2K9I A;  1ARR A;  1SH0 A;  3VEB A;  1SIW A;  3FMT A;  1MYK A;  4MJW A;  4NRT A;  2CKW A;  1X93 A;  2K1O A;  4O4R A;  3QOQ A;  3NO7 A;  2ADL A;  3QID A;  2JBV A;  1SH2 A;  2WVD A;  2JXG A;  3BSO A;  3FT7 A;  3LGH A;  1EA4 A;  2GPE A;  4D8J A;  2BSQ E;  2WK4 A;  2BNZ A;  1Q16 A;  3LJP A;  2BJ7 A;  2H1O E;  4AAI A;  3UPF A;  4FXE A;  4ME7 E;  4LQ9 A;  2Q2K A;  3BSN A;  2CAX A;  3UQS A; 
#chains in the Genus database with same CATH homology
 2HZA A;  2WVE A;  2CAD A;  3H87 C;  2JXG A;  3OD2 A;  2BNW A;  2K29 A;  1IRQ A;  1PAR A;  3FT7 A;  3LGH A;  2K5J A;  2WVB A;  1B01 A;  1EA4 A;  2GPE A;  1BDT A;  2BA3 A;  4D8J A;  2BSQ E;  1ARQ A;  2BJ3 A;  2CPG A;  4HV0 A;  2BNZ A;  1Q5V A;  3VEA A;  2JXH A;  2BJ1 A;  2BJ8 A;  3GXQ A;  2JXI A;  2BJ7 A;  2H1O E;  2HZV A;  1B28 A;  4FXE A;  2K9I A;  2WVC A;  1ARR A;  3VEB A;  2CAJ A;  1BDV A;  3FMT A;  1MYK A;  2WVF A;  4ME7 E;  1MYL A;  2AY0 A;  1X93 A;  1QTG A;  2K1O A;  3QOQ A;  1P94 A;  2K6L A;  1BAZ A;  1U9P A;  2CA9 A;  1NLA A;  3VW4 A;  1MNT A;  2BJ9 A;  2KEL A;  2WVD A;  2RBF A;  2CAX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2BNWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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