2BNZ | Genus

Total Genus 15

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	50
structure length	50
Chain Sequence	KDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/dna
source organism	Streptococcus pyogenes
publication title	Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription. pubmed doi rcsb
molecule keywords	ORF OMEGA
total genus	15
structure length	50
sequence length	50
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2005-04-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	2bnzA00

2WVBA 1MYLA 2K5JA 2K9IA 2CADA 3FMTA 4D8JA 1BDVA 2BJ3A 2BJ7A 2WVFA 3OD2A 2CPGA 3VEAA 1X93A 1IRQA 1MYKA 3H87C 1BAZA 1U9PA 2BJ8A 1MNTA 2BNWA 2WVCA 1Q5VA 1PARA 2KELA 2CA9A 2HZVA 2BSQE 2CAXA 1B28A 2JXIA 1NLAA 1QTGA 3FT7A 1BDTA 2WVDA 2RBFA 2HZAA 2CAJA 2JXHA 3QOQA 3GXQA 1ARQA 2K1OA 2BA3A 3LGHA 2H1OE 2BNZA 2WVEA 4ME7E 4FXEA 1P94A 3VEBA 2GPEA 1EA4A 1B01A 2BJ1A 2K29A 4HV0A 1ARRA 2BJ9A 2JXGA 2K6LA 3VW4A 2AY0A
chains in the Genus database with same CATH superfamily

3UPFA 3NAHA 1OG7A 3OD2A 1X93A 3BSNA 3NNEA 2BJ8A 1MNTA 2BNWA 2WVCA 2KELA 1BDTA 2RBFA 3BSOA 2CAJA 1ARQA 4MJWA 3LGHA 2A2BA 4QPXA 1EA4A 2JXGA 2CKWA 3NAIA 3H5YA 2WVBA 3FMTA 4NRTA 2BJ3A 2WVFA 1IRQA 3UQSA 2AN7A 1BAZA 2JBVA 3SFUA 3SFGA 1Q5VA 2WK4A 2H3AA 1PARA 1B28A 2BSQE 2KOEA 1SH0A 2HZAA 2JXHA 3GXQA 1OHNA 2Q2KA 1SH2A 2K29A 1ARRA 2BJ9A 3UR0A 3LJPA 3IR7A 3VW4A 2AY0A 1MYLA 2K5JA 2K9IA 4D8JA 1BDVA 2BJ7A 1SH3A 4O4RA 2CPGA 3VEAA 4NRUA 4LQ9A 1MYKA 1U9PA 3G5OA 2CA9A 2HZVA 2B43A 2JXIA 1QTGA 1Q16A 3QOQA 4LRVA 2K1OA 2H1OE 3H5XA 2UUWA 2BNZA 2WVEA 4FXEA 4LQ3A 3VEBA 2GPEA 2BJ1A 3QIDA 2CADA 3H87C 2CAXA 1SIWA 1NLAA 3FT7A 2WVDA 2ADLA 2UUTA 2BA3A 4ME7E 1P94A 1B01A 4HV0A 2K6LA 2KKEA 4AAIA 3NO7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2WVB A;  1MYL A;  2K5J A;  2K9I A;  2CAD A;  3FMT A;  4D8J A;  1BDV A;  2BJ3 A;  2BJ7 A;  2WVF A;  3OD2 A;  2CPG A;  3VEA A;  1X93 A;  1IRQ A;  1MYK A;  3H87 C;  1BAZ A;  1U9P A;  2BJ8 A;  1MNT A;  2BNW A;  2WVC A;  1Q5V A;  1PAR A;  2KEL A;  2CA9 A;  2HZV A;  2BSQ E;  2CAX A;  1B28 A;  2JXI A;  1NLA A;  1QTG A;  3FT7 A;  1BDT A;  2WVD A;  2RBF A;  2HZA A;  2CAJ A;  2JXH A;  3QOQ A;  3GXQ A;  1ARQ A;  2K1O A;  2BA3 A;  3LGH A;  2H1O E;  2BNZ A;  2WVE A;  4ME7 E;  4FXE A;  1P94 A;  3VEB A;  2GPE A;  1EA4 A;  1B01 A;  2BJ1 A;  2K29 A;  4HV0 A;  1ARR A;  2BJ9 A;  2JXG A;  2K6L A;  3VW4 A;  2AY0 A; 
#chains in the Genus database with same CATH topology
 3UPF A;  3NAH A;  1OG7 A;  3OD2 A;  1X93 A;  3BSN A;  3NNE A;  2BJ8 A;  1MNT A;  2BNW A;  2WVC A;  2KEL A;  1BDT A;  2RBF A;  3BSO A;  2CAJ A;  1ARQ A;  4MJW A;  3LGH A;  2A2B A;  4QPX A;  1EA4 A;  2JXG A;  2CKW A;  3NAI A;  3H5Y A;  2WVB A;  3FMT A;  4NRT A;  2BJ3 A;  2WVF A;  1IRQ A;  3UQS A;  2AN7 A;  1BAZ A;  2JBV A;  3SFU A;  3SFG A;  1Q5V A;  2WK4 A;  2H3A A;  1PAR A;  1B28 A;  2BSQ E;  2KOE A;  1SH0 A;  2HZA A;  2JXH A;  3GXQ A;  1OHN A;  2Q2K A;  1SH2 A;  2K29 A;  1ARR A;  2BJ9 A;  3UR0 A;  3LJP A;  3IR7 A;  3VW4 A;  2AY0 A;  1MYL A;  2K5J A;  2K9I A;  4D8J A;  1BDV A;  2BJ7 A;  1SH3 A;  4O4R A;  2CPG A;  3VEA A;  4NRU A;  4LQ9 A;  1MYK A;  1U9P A;  3G5O A;  2CA9 A;  2HZV A;  2B43 A;  2JXI A;  1QTG A;  1Q16 A;  3QOQ A;  4LRV A;  2K1O A;  2H1O E;  3H5X A;  2UUW A;  2BNZ A;  2WVE A;  4FXE A;  4LQ3 A;  3VEB A;  2GPE A;  2BJ1 A;  3QID A;  2CAD A;  3H87 C;  2CAX A;  1SIW A;  1NLA A;  3FT7 A;  2WVD A;  2ADL A;  2UUT A;  2BA3 A;  4ME7 E;  1P94 A;  1B01 A;  4HV0 A;  2K6L A;  2KKE A;  4AAI A;  3NO7 A; 
#chains in the Genus database with same CATH homology
 2WVB A;  1MYL A;  2K5J A;  2K9I A;  2CAD A;  3FMT A;  4D8J A;  1BDV A;  2BJ3 A;  2BJ7 A;  2WVF A;  3OD2 A;  2CPG A;  3VEA A;  1X93 A;  1IRQ A;  1MYK A;  3H87 C;  1BAZ A;  1U9P A;  2BJ8 A;  1MNT A;  2BNW A;  2WVC A;  1Q5V A;  1PAR A;  2KEL A;  2CA9 A;  2HZV A;  2BSQ E;  2CAX A;  1B28 A;  2JXI A;  1NLA A;  1QTG A;  3FT7 A;  1BDT A;  2WVD A;  2RBF A;  2HZA A;  2CAJ A;  2JXH A;  3QOQ A;  3GXQ A;  1ARQ A;  2K1O A;  2BA3 A;  3LGH A;  2H1O E;  2BNZ A;  2WVE A;  4ME7 E;  4FXE A;  1P94 A;  3VEB A;  2GPE A;  1EA4 A;  1B01 A;  2BJ1 A;  2K29 A;  4HV0 A;  1ARR A;  2BJ9 A;  2JXG A;  2K6L A;  3VW4 A;  2AY0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BNZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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