2BNZA

Structural basis for cooperative binding of ribbon-helix-helix omega repressor to inverted dna heptad repeats
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
50
structure length
50
Chain Sequence
KDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription.
pubmed doi rcsb
molecule tags Dna binding protein/dna
source organism Streptococcus pyogenes
molecule keywords ORF OMEGA
total genus 15
structure length 50
sequence length 50
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-04-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2bnzA00
2CA9A 2BA3A 2GPEA 4D8JA 2HZAA 1MYKA 2CPGA 2K1OA 3H87C 1EA4A 1MNTA 3VEBA 2K9IA 2KELA 3FT7A 2CAXA 4FXEA 2BSQE 2JXIA 2K29A 1NLAA 3VW4A 1B01A 2HZVA 2BNWA 2BNZA 1BDVA 2WVEA 2WVFA 2JXGA 4ME7E 1IRQA 2K6LA 1P94A 2BJ7A 3OD2A 3GXQA 3QOQA 1QTGA 4HV0A 2WVDA 1Q5VA 2BJ8A 2AY0A 2BJ3A 1MYLA 2CADA 2BJ1A 3LGHA 2RBFA 1PARA 2H1OE 1BDTA 2K5JA 1ARRA 2WVCA 2CAJA 1ARQA 1U9PA 2BJ9A 3FMTA 2JXHA 3VEAA 2WVBA 1BAZA 1B28A 1X93A
chains in the Genus database with same CATH superfamily
1MYKA 2CPGA 3H87C 3UR0A 1SIWA 1SH3A 2K9IA 2K29A 1NLAA 3VW4A 1B01A 2HZVA 3IR7A 2BNWA 2BNZA 2WVEA 3QIDA 4ME7E 1IRQA 1P94A 2AN7A 1QTGA 1Q5VA 3LGHA 2RBFA 2H1OE 2KOEA 2CAJA 3UQSA 1ARQA 3FMTA 3VEAA 1B28A 1X93A 3UPFA 2GPEA 3NAHA 3NNEA 2HZAA 1SH2A 3BSNA 1MNTA 3G5OA 4MJWA 3H5YA 3VEBA 2A2BA 2KKEA 3FT7A 2JXIA 2JXGA 4O4RA 2K6LA 3OD2A 3QOQA 4LQ3A 4LQ9A 4QPXA 2BJ3A 1BDTA 2K5JA 1U9PA 2WVBA 2H3AA 3SFUA 2B43A 3H5XA 3NAIA 3SFGA 1OG7A 4D8JA 2Q2KA 4LRVA 4NRUA 4FXEA 2BJ7A 3GXQA 4HV0A 2BJ8A 2CADA 2BJ1A 2UUTA 1PARA 1ARRA 3NO7A 2WVCA 2ADLA 2CA9A 3BSOA 2BA3A 2K1OA 1Q16A 1EA4A 2KELA 2CAXA 2BSQE 1BDVA 2WVFA 4AAIA 2JBVA 2WVDA 2AY0A 1MYLA 4NRTA 1SH0A 2CKWA 2UUWA 2BJ9A 2JXHA 3LJPA 1BAZA 1OHNA 2WK4A
chains in the Genus database with same CATH topology
2CA9A 2BA3A 2GPEA 4D8JA 2HZAA 1MYKA 2CPGA 2K1OA 3H87C 1EA4A 1MNTA 3VEBA 2K9IA 2KELA 3FT7A 2CAXA 4FXEA 2BSQE 2JXIA 2K29A 1NLAA 3VW4A 1B01A 2HZVA 2BNWA 2BNZA 1BDVA 2WVEA 2WVFA 2JXGA 4ME7E 1IRQA 2K6LA 1P94A 2BJ7A 3OD2A 3GXQA 3QOQA 1QTGA 4HV0A 2WVDA 1Q5VA 2BJ8A 2AY0A 2BJ3A 1MYLA 2CADA 2BJ1A 3LGHA 2RBFA 1PARA 2H1OE 1BDTA 2K5JA 1ARRA 2WVCA 2CAJA 1ARQA 1U9PA 2BJ9A 3FMTA 2JXHA 3VEAA 2WVBA 1BAZA 1B28A 1X93A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CA9 A;  2BA3 A;  2GPE A;  4D8J A;  2HZA A;  1MYK A;  2CPG A;  2K1O A;  3H87 C;  1EA4 A;  1MNT A;  3VEB A;  2K9I A;  2KEL A;  3FT7 A;  2CAX A;  4FXE A;  2BSQ E;  2JXI A;  2K29 A;  1NLA A;  3VW4 A;  1B01 A;  2HZV A;  2BNW A;  2BNZ A;  1BDV A;  2WVE A;  2WVF A;  2JXG A;  4ME7 E;  1IRQ A;  2K6L A;  1P94 A;  2BJ7 A;  3OD2 A;  3GXQ A;  3QOQ A;  1QTG A;  4HV0 A;  2WVD A;  1Q5V A;  2BJ8 A;  2AY0 A;  2BJ3 A;  1MYL A;  2CAD A;  2BJ1 A;  3LGH A;  2RBF A;  1PAR A;  2H1O E;  1BDT A;  2K5J A;  1ARR A;  2WVC A;  2CAJ A;  1ARQ A;  1U9P A;  2BJ9 A;  3FMT A;  2JXH A;  3VEA A;  2WVB A;  1BAZ A;  1B28 A;  1X93 A; 
#chains in the Genus database with same CATH topology
 1MYK A;  2CPG A;  3H87 C;  3UR0 A;  1SIW A;  1SH3 A;  2K9I A;  2K29 A;  1NLA A;  3VW4 A;  1B01 A;  2HZV A;  3IR7 A;  2BNW A;  2BNZ A;  2WVE A;  3QID A;  4ME7 E;  1IRQ A;  1P94 A;  2AN7 A;  1QTG A;  1Q5V A;  3LGH A;  2RBF A;  2H1O E;  2KOE A;  2CAJ A;  3UQS A;  1ARQ A;  3FMT A;  3VEA A;  1B28 A;  1X93 A;  3UPF A;  2GPE A;  3NAH A;  3NNE A;  2HZA A;  1SH2 A;  3BSN A;  1MNT A;  3G5O A;  4MJW A;  3H5Y A;  3VEB A;  2A2B A;  2KKE A;  3FT7 A;  2JXI A;  2JXG A;  4O4R A;  2K6L A;  3OD2 A;  3QOQ A;  4LQ3 A;  4LQ9 A;  4QPX A;  2BJ3 A;  1BDT A;  2K5J A;  1U9P A;  2WVB A;  2H3A A;  3SFU A;  2B43 A;  3H5X A;  3NAI A;  3SFG A;  1OG7 A;  4D8J A;  2Q2K A;  4LRV A;  4NRU A;  4FXE A;  2BJ7 A;  3GXQ A;  4HV0 A;  2BJ8 A;  2CAD A;  2BJ1 A;  2UUT A;  1PAR A;  1ARR A;  3NO7 A;  2WVC A;  2ADL A;  2CA9 A;  3BSO A;  2BA3 A;  2K1O A;  1Q16 A;  1EA4 A;  2KEL A;  2CAX A;  2BSQ E;  1BDV A;  2WVF A;  4AAI A;  2JBV A;  2WVD A;  2AY0 A;  1MYL A;  4NRT A;  1SH0 A;  2CKW A;  2UUW A;  2BJ9 A;  2JXH A;  3LJP A;  1BAZ A;  1OHN A;  2WK4 A; 
#chains in the Genus database with same CATH homology
 2CA9 A;  2BA3 A;  2GPE A;  4D8J A;  2HZA A;  1MYK A;  2CPG A;  2K1O A;  3H87 C;  1EA4 A;  1MNT A;  3VEB A;  2K9I A;  2KEL A;  3FT7 A;  2CAX A;  4FXE A;  2BSQ E;  2JXI A;  2K29 A;  1NLA A;  3VW4 A;  1B01 A;  2HZV A;  2BNW A;  2BNZ A;  1BDV A;  2WVE A;  2WVF A;  2JXG A;  4ME7 E;  1IRQ A;  2K6L A;  1P94 A;  2BJ7 A;  3OD2 A;  3GXQ A;  3QOQ A;  1QTG A;  4HV0 A;  2WVD A;  1Q5V A;  2BJ8 A;  2AY0 A;  2BJ3 A;  1MYL A;  2CAD A;  2BJ1 A;  3LGH A;  2RBF A;  1PAR A;  2H1O E;  1BDT A;  2K5J A;  1ARR A;  2WVC A;  2CAJ A;  1ARQ A;  1U9P A;  2BJ9 A;  3FMT A;  2JXH A;  3VEA A;  2WVB A;  1BAZ A;  1B28 A;  1X93 A; 
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similar chains in the Genus database (?% sequence similarity)
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