2BQ1E

Ribonucleotide reductase class 1b holocomplex r1e,r2f from salmonella typhimurium
Total Genus 208

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
688
structure length
675
Chain Sequence
ETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQGAGAVYLHAHHPDILRFLDTKRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL
100200300400500600600500400300200100
050100150200Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Salmonella typhimurium
publication title The First Holocomplex Structure of Ribonucleotide Reductase Gives New Insight Into its Mechanism of Action
pubmed doi rcsb
molecule keywords RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 ALPHA SUBUNIT
total genus 208
structure length 675
sequence length 688
chains with identical sequence F
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2005-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
E PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
E PF08343 RNR_N Ribonucleotide reductase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1650.20 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 2bq1E03
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 2bq1E02
2XAPA 1H7AA 2ZLGA 1PEOA 3RSRA 1R9DA 3R1RA 2XO5A 3TB9A 2CVSA 3S87A 2XAXA 1XJJA 7R1RA 3PFLA 2CVYA 1PEUA 1RLRA 4MTJA 2HA9A 1H78A 3K8TA 3O0OA 4ERMA 1L1LA 1XJKA 1CM5A 2WGHA 1H79A 2XAWA 4R1RA 3TBAA 2BQ1E 2X0XA 3S8BA 3HNFA 3S8CA 2PFLA 1HK8A 1XJMA 1XJNA 6R1RA 1H16A 1R8WA 2Y8NA 3HNCA 1R1RA 4X3VA 2YAJA 3O0QA 5CNVA 2XAVA 1PEQA 2CVXA 2CVWA 1ZYZA 2CVVA 5CNUA 1MZOA 2CVUA 2XAYA 2XAKA 5R1RA 3S8AA 1XJFA 1H18A 2CVTA 1XJGA 1H17A 2F3OA 1PEMA 3O0NA 2R1RA 1QHMA 2EUDA 5CNTA 1ZZDA 5CNSA 1XJEA 3HNDA 1H7BA 3HNEA 2XO4A 2XAZA 2ZLFA
chains in the Genus database with same CATH superfamily
5FAWA 3CCQP 1YIJP 3CMEP 1VQMP 1YI2P 3G4SP 2XAPA 3CCMP 1H7AA 2ZLGA 1PEOA 1YJWP 1S72P 3CCLP 3CC7P 3RSRA 1R9DA 3R1RA 2XO5A 1K9MQ 1N8RQ 3TB9A 2CVSA 1Q86Q 3S87A 2OTLP 2XAXA 1XJJA 7R1RA 1VQ9P 5A0UA 3G6EP 3PFLA 2CVYA 1PEUA 1M90Q 1RLRA 4MTJA 2HA9A 5A0ZA 1H78A 3OW2O 3G71P 1VQ8P 3CC4P 3CCSP 1VQNP 1VQ5P 5KDPA 3K8TA 1K8AQ 3O0OA 3CC2P 1YHQP 1YJ9P 1L1LA 4ERMA 1NJIQ 1M1KQ 1VQ4P 1VQLP 1XJKA 1W2BO 1CM5A 2WGHA 1H79A 2XAWA 4R1RA 3TBAA 1JJ2O 3I55P 2BQ1E 2X0XA 3CCRP 3HNFA 3S8BA 3CCJP 3S8CA 2PFLA 1HK8A 1XJMA 1VQ7P 1XJNA 1VQ6P 1YITP 6R1RA 5FAYA 1H16A 1R8WA 1YJNP 2Y8NA 3HNCA 2QA4P 2OTJP 3CXCO 1KD1Q 1R1RA 1Q7YQ 2QEXP 3CPWO 4X3VA 2YAJA 3O0QA 3CCUP 1Q82Q 5CNVA 2XAVA 1PEQA 2ZLFA 2CVXA 2CVWA 1ZYZA 2CVVA 1KC8Q 3CCVP 1QVFO 1VQOP 5CNUA 1MZOA 2CVUA 2XAYA 2XAKA 5R1RA 5FAVA 3S8AA 3I56P 1QVGO 1XJFA 3CD6P 1H18A 2CVTA 2XAZA 1XJGA 1H17A 2F3OA 3O0NA 2R1RA 1VQPP 1Q81Q 3CCEP 1KQSO 1QHMA 2EUDA 5CNTA 1ZZDA 5CNSA 1XJEA 3HNDA 1H7BA 3HNEA 3CMAP 1K73Q 2XO4A 5FAUA 1VQKP 1PEMA
chains in the Genus database with same CATH topology
5FAWA 3CCQP 1YIJP 3CMEP 1VQMP 1YI2P 3G4SP 2XAPA 3CCMP 1H7AA 2ZLGA 1PEOA 1YJWP 1S72P 3CCLP 3CC7P 3RSRA 1R9DA 3R1RA 2XO5A 1K9MQ 1N8RQ 3TB9A 2CVSA 1Q86Q 3S87A 2OTLP 2XAXA 1XJJA 7R1RA 1VQ9P 5A0UA 3G6EP 3PFLA 2CVYA 1PEUA 1M90Q 1RLRA 4MTJA 2HA9A 5A0ZA 1H78A 3OW2O 3G71P 1VQ8P 3CC4P 3CCSP 1VQNP 1VQ5P 5KDPA 3K8TA 1K8AQ 3O0OA 3CC2P 1YHQP 1YJ9P 1L1LA 4ERMA 1NJIQ 1M1KQ 1VQ4P 1VQLP 1XJKA 1W2BO 1CM5A 2WGHA 1H79A 2XAWA 4R1RA 3TBAA 1JJ2O 3I55P 2BQ1E 2X0XA 3CCRP 3HNFA 3S8BA 3CCJP 3S8CA 2PFLA 1HK8A 1XJMA 1VQ7P 1XJNA 1VQ6P 1YITP 6R1RA 5FAYA 1H16A 1R8WA 1YJNP 2Y8NA 3HNCA 2QA4P 2OTJP 3CXCO 1KD1Q 1R1RA 1Q7YQ 2QEXP 3CPWO 4X3VA 2YAJA 3O0QA 3CCUP 1Q82Q 5CNVA 2XAVA 1PEQA 2ZLFA 2CVXA 2CVWA 1ZYZA 2CVVA 1KC8Q 3CCVP 1QVFO 1VQOP 5CNUA 1MZOA 2CVUA 2XAYA 2XAKA 5R1RA 5FAVA 3S8AA 3I56P 1QVGO 1XJFA 3CD6P 1H18A 2CVTA 2XAZA 1XJGA 1H17A 2F3OA 3O0NA 2R1RA 1VQPP 1Q81Q 3CCEP 1KQSO 1QHMA 2EUDA 5CNTA 1ZZDA 5CNSA 1XJEA 3HNDA 1H7BA 3HNEA 3CMAP 1K73Q 2XO4A 5FAUA 1VQKP 1PEMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XAP A;  1H7A A;  2ZLG A;  1PEO A;  3RSR A;  1R9D A;  3R1R A;  2XO5 A;  3TB9 A;  2CVS A;  3S87 A;  2XAX A;  1XJJ A;  7R1R A;  3PFL A;  2CVY A;  1PEU A;  1RLR A;  4MTJ A;  2HA9 A;  1H78 A;  3K8T A;  3O0O A;  4ERM A;  1L1L A;  1XJK A;  1CM5 A;  2WGH A;  1H79 A;  2XAW A;  4R1R A;  3TBA A;  2BQ1 E;  2X0X A;  3S8B A;  3HNF A;  3S8C A;  2PFL A;  1HK8 A;  1XJM A;  1XJN A;  6R1R A;  1H16 A;  1R8W A;  2Y8N A;  3HNC A;  1R1R A;  4X3V A;  2YAJ A;  3O0Q A;  5CNV A;  2XAV A;  1PEQ A;  2CVX A;  2CVW A;  1ZYZ A;  2CVV A;  5CNU A;  1MZO A;  2CVU A;  2XAY A;  2XAK A;  5R1R A;  3S8A A;  1XJF A;  1H18 A;  2CVT A;  1XJG A;  1H17 A;  2F3O A;  1PEM A;  3O0N A;  2R1R A;  1QHM A;  2EUD A;  5CNT A;  1ZZD A;  5CNS A;  1XJE A;  3HND A;  1H7B A;  3HNE A;  2XO4 A;  2XAZ A;  2ZLF A; 
#chains in the Genus database with same CATH topology
 5FAW A;  3CCQ P;  1YIJ P;  3CME P;  1VQM P;  1YI2 P;  3G4S P;  2XAP A;  3CCM P;  1H7A A;  2ZLG A;  1PEO A;  1YJW P;  1S72 P;  3CCL P;  3CC7 P;  3RSR A;  1R9D A;  3R1R A;  2XO5 A;  1K9M Q;  1N8R Q;  3TB9 A;  2CVS A;  1Q86 Q;  3S87 A;  2OTL P;  2XAX A;  1XJJ A;  7R1R A;  1VQ9 P;  5A0U A;  3G6E P;  3PFL A;  2CVY A;  1PEU A;  1M90 Q;  1RLR A;  4MTJ A;  2HA9 A;  5A0Z A;  1H78 A;  3OW2 O;  3G71 P;  1VQ8 P;  3CC4 P;  3CCS P;  1VQN P;  1VQ5 P;  5KDP A;  3K8T A;  1K8A Q;  3O0O A;  3CC2 P;  1YHQ P;  1YJ9 P;  1L1L A;  4ERM A;  1NJI Q;  1M1K Q;  1VQ4 P;  1VQL P;  1XJK A;  1W2B O;  1CM5 A;  2WGH A;  1H79 A;  2XAW A;  4R1R A;  3TBA A;  1JJ2 O;  3I55 P;  2BQ1 E;  2X0X A;  3CCR P;  3HNF A;  3S8B A;  3CCJ P;  3S8C A;  2PFL A;  1HK8 A;  1XJM A;  1VQ7 P;  1XJN A;  1VQ6 P;  1YIT P;  6R1R A;  5FAY A;  1H16 A;  1R8W A;  1YJN P;  2Y8N A;  3HNC A;  2QA4 P;  2OTJ P;  3CXC O;  1KD1 Q;  1R1R A;  1Q7Y Q;  2QEX P;  3CPW O;  4X3V A;  2YAJ A;  3O0Q A;  3CCU P;  1Q82 Q;  5CNV A;  2XAV A;  1PEQ A;  2ZLF A;  2CVX A;  2CVW A;  1ZYZ A;  2CVV A;  1KC8 Q;  3CCV P;  1QVF O;  1VQO P;  5CNU A;  1MZO A;  2CVU A;  2XAY A;  2XAK A;  5R1R A;  5FAV A;  3S8A A;  3I56 P;  1QVG O;  1XJF A;  3CD6 P;  1H18 A;  2CVT A;  2XAZ A;  1XJG A;  1H17 A;  2F3O A;  3O0N A;  2R1R A;  1VQP P;  1Q81 Q;  3CCE P;  1KQS O;  1QHM A;  2EUD A;  5CNT A;  1ZZD A;  5CNS A;  1XJE A;  3HND A;  1H7B A;  3HNE A;  3CMA P;  1K73 Q;  2XO4 A;  5FAU A;  1VQK P;  1PEM A; 
#chains in the Genus database with same CATH homology
 5FAW A;  3CCQ P;  1YIJ P;  3CME P;  1VQM P;  1YI2 P;  3G4S P;  2XAP A;  3CCM P;  1H7A A;  2ZLG A;  1PEO A;  1YJW P;  1S72 P;  3CCL P;  3CC7 P;  3RSR A;  1R9D A;  3R1R A;  2XO5 A;  1K9M Q;  1N8R Q;  3TB9 A;  2CVS A;  1Q86 Q;  3S87 A;  2OTL P;  2XAX A;  1XJJ A;  7R1R A;  1VQ9 P;  5A0U A;  3G6E P;  3PFL A;  2CVY A;  1PEU A;  1M90 Q;  1RLR A;  4MTJ A;  2HA9 A;  5A0Z A;  1H78 A;  3OW2 O;  3G71 P;  1VQ8 P;  3CC4 P;  3CCS P;  1VQN P;  1VQ5 P;  5KDP A;  3K8T A;  1K8A Q;  3O0O A;  3CC2 P;  1YHQ P;  1YJ9 P;  1L1L A;  4ERM A;  1NJI Q;  1M1K Q;  1VQ4 P;  1VQL P;  1XJK A;  1W2B O;  1CM5 A;  2WGH A;  1H79 A;  2XAW A;  4R1R A;  3TBA A;  1JJ2 O;  3I55 P;  2BQ1 E;  2X0X A;  3CCR P;  3HNF A;  3S8B A;  3CCJ P;  3S8C A;  2PFL A;  1HK8 A;  1XJM A;  1VQ7 P;  1XJN A;  1VQ6 P;  1YIT P;  6R1R A;  5FAY A;  1H16 A;  1R8W A;  1YJN P;  2Y8N A;  3HNC A;  2QA4 P;  2OTJ P;  3CXC O;  1KD1 Q;  1R1R A;  1Q7Y Q;  2QEX P;  3CPW O;  4X3V A;  2YAJ A;  3O0Q A;  3CCU P;  1Q82 Q;  5CNV A;  2XAV A;  1PEQ A;  2ZLF A;  2CVX A;  2CVW A;  1ZYZ A;  2CVV A;  1KC8 Q;  3CCV P;  1QVF O;  1VQO P;  5CNU A;  1MZO A;  2CVU A;  2XAY A;  2XAK A;  5R1R A;  5FAV A;  3S8A A;  3I56 P;  1QVG O;  1XJF A;  3CD6 P;  1H18 A;  2CVT A;  2XAZ A;  1XJG A;  1H17 A;  2F3O A;  3O0N A;  2R1R A;  1VQP P;  1Q81 Q;  3CCE P;  1KQS O;  1QHM A;  2EUD A;  5CNT A;  1ZZD A;  5CNS A;  1XJE A;  3HND A;  1H7B A;  3HNE A;  3CMA P;  1K73 Q;  2XO4 A;  5FAU A;  1VQK P;  1PEM A; 
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