2BSQE

Fitab bound to dna
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
68
structure length
68
Chain Sequence
ASVVIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGGVELEDVRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-23)AH2 (28-43)TVIII1 (44-47)AH3 (48-59)EMPTYTIV1 (6-9)Updating...
connected with : NaN
molecule tags Transcription
source organism Neisseria gonorrhoeae
publication title Structure of Fitab from Neisseria Gonorrhoeae Bound to DNA Reveals a Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs.
pubmed doi rcsb
molecule keywords TRAFFICKING PROTEIN B
total genus 17
structure length 68
sequence length 68
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2005-05-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2bsqE01
2BJ1A 2RBFA 1X93A 1BDTA 3VW4A 2WVFA 1MNTA 2CAJA 1BDVA 1ARRA 2K1OA 3QOQA 1BAZA 2BJ7A 3VEBA 1NLAA 2BSQE 1Q5VA 1IRQA 2BJ9A 3FMTA 2K6LA 2WVCA 1MYKA 1QTGA 3FT7A 2GPEA 3H87C 1EA4A 2HZAA 2K29A 2BA3A 2CAXA 2JXIA 2H1OE 2WVEA 2CA9A 4ME7E 3VEAA 1B01A 3OD2A 4HV0A 1PARA 4D8JA 2BNWA 2BNZA 2CADA 2BJ3A 2JXGA 2K5JA 2HZVA 1B28A 1U9PA 1MYLA 2WVDA 2JXHA 2K9IA 4FXEA 2BJ8A 1ARQA 1P94A 3GXQA 2CPGA 2AY0A 2KELA 3LGHA 2WVBA
chains in the Genus database with same CATH superfamily
1Q16A 2RBFA 1X93A 1BDVA 2UUTA 3QOQA 3UPFA 3VEBA 1NLAA 1Q5VA 3NO7A 2AN7A 1SH2A 1QTGA 3FT7A 2GPEA 4NRTA 1EA4A 2K29A 2BA3A 2CA9A 4ME7E 2H3AA 3OD2A 4HV0A 1PARA 2ADLA 4D8JA 3H5XA 2BJ3A 2K5JA 1SIWA 2K9IA 2CPGA 3BSNA 2AY0A 2KELA 3LGHA 2BJ1A 2B43A 3H5YA 2BSQE 4AAIA 2UUWA 3FMTA 2K6LA 3UQSA 2JXIA 2WVEA 3BSOA 2CKWA 1OG7A 2CADA 2JXGA 1SH3A 4LQ3A 4O4RA 1MYLA 2JXHA 4FXEA 2BJ8A 1OHNA 2WVFA 1MNTA 2CAJA 3SFUA 1ARRA 4MJWA 2BJ7A 3LJPA 4NRUA 2BJ9A 4QPXA 2WVCA 2Q2KA 3H87C 2CAXA 3NAHA 4LRVA 2A2BA 2KOEA 3VEAA 3NNEA 3NAIA 2HZVA 3UR0A 3G5OA 2JBVA 3GXQA 2KKEA 1BDTA 3VW4A 2K1OA 1BAZA 1IRQA 1SH0A 1MYKA 2HZAA 2H1OE 1B01A 3IR7A 3QIDA 2BNWA 2BNZA 1B28A 1U9PA 2WVDA 1ARQA 1P94A 2WK4A 3SFGA 2WVBA 4LQ9A
chains in the Genus database with same CATH topology
2BJ1A 2RBFA 1X93A 1BDTA 3VW4A 2WVFA 1MNTA 2CAJA 1BDVA 1ARRA 2K1OA 3QOQA 1BAZA 2BJ7A 3VEBA 1NLAA 2BSQE 1Q5VA 1IRQA 2BJ9A 3FMTA 2K6LA 2WVCA 1MYKA 1QTGA 3FT7A 2GPEA 3H87C 1EA4A 2HZAA 2K29A 2BA3A 2CAXA 2JXIA 2H1OE 2WVEA 2CA9A 4ME7E 3VEAA 1B01A 3OD2A 4HV0A 1PARA 4D8JA 2BNWA 2BNZA 2CADA 2BJ3A 2JXGA 2K5JA 2HZVA 1B28A 1U9PA 1MYLA 2WVDA 2JXHA 2K9IA 4FXEA 2BJ8A 1ARQA 1P94A 3GXQA 2CPGA 2AY0A 2KELA 3LGHA 2WVBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BJ1 A;  2RBF A;  1X93 A;  1BDT A;  3VW4 A;  2WVF A;  1MNT A;  2CAJ A;  1BDV A;  1ARR A;  2K1O A;  3QOQ A;  1BAZ A;  2BJ7 A;  3VEB A;  1NLA A;  2BSQ E;  1Q5V A;  1IRQ A;  2BJ9 A;  3FMT A;  2K6L A;  2WVC A;  1MYK A;  1QTG A;  3FT7 A;  2GPE A;  3H87 C;  1EA4 A;  2HZA A;  2K29 A;  2BA3 A;  2CAX A;  2JXI A;  2H1O E;  2WVE A;  2CA9 A;  4ME7 E;  3VEA A;  1B01 A;  3OD2 A;  4HV0 A;  1PAR A;  4D8J A;  2BNW A;  2BNZ A;  2CAD A;  2BJ3 A;  2JXG A;  2K5J A;  2HZV A;  1B28 A;  1U9P A;  1MYL A;  2WVD A;  2JXH A;  2K9I A;  4FXE A;  2BJ8 A;  1ARQ A;  1P94 A;  3GXQ A;  2CPG A;  2AY0 A;  2KEL A;  3LGH A;  2WVB A; 
#chains in the Genus database with same CATH topology
 1Q16 A;  2RBF A;  1X93 A;  1BDV A;  2UUT A;  3QOQ A;  3UPF A;  3VEB A;  1NLA A;  1Q5V A;  3NO7 A;  2AN7 A;  1SH2 A;  1QTG A;  3FT7 A;  2GPE A;  4NRT A;  1EA4 A;  2K29 A;  2BA3 A;  2CA9 A;  4ME7 E;  2H3A A;  3OD2 A;  4HV0 A;  1PAR A;  2ADL A;  4D8J A;  3H5X A;  2BJ3 A;  2K5J A;  1SIW A;  2K9I A;  2CPG A;  3BSN A;  2AY0 A;  2KEL A;  3LGH A;  2BJ1 A;  2B43 A;  3H5Y A;  2BSQ E;  4AAI A;  2UUW A;  3FMT A;  2K6L A;  3UQS A;  2JXI A;  2WVE A;  3BSO A;  2CKW A;  1OG7 A;  2CAD A;  2JXG A;  1SH3 A;  4LQ3 A;  4O4R A;  1MYL A;  2JXH A;  4FXE A;  2BJ8 A;  1OHN A;  2WVF A;  1MNT A;  2CAJ A;  3SFU A;  1ARR A;  4MJW A;  2BJ7 A;  3LJP A;  4NRU A;  2BJ9 A;  4QPX A;  2WVC A;  2Q2K A;  3H87 C;  2CAX A;  3NAH A;  4LRV A;  2A2B A;  2KOE A;  3VEA A;  3NNE A;  3NAI A;  2HZV A;  3UR0 A;  3G5O A;  2JBV A;  3GXQ A;  2KKE A;  1BDT A;  3VW4 A;  2K1O A;  1BAZ A;  1IRQ A;  1SH0 A;  1MYK A;  2HZA A;  2H1O E;  1B01 A;  3IR7 A;  3QID A;  2BNW A;  2BNZ A;  1B28 A;  1U9P A;  2WVD A;  1ARQ A;  1P94 A;  2WK4 A;  3SFG A;  2WVB A;  4LQ9 A; 
#chains in the Genus database with same CATH homology
 2BJ1 A;  2RBF A;  1X93 A;  1BDT A;  3VW4 A;  2WVF A;  1MNT A;  2CAJ A;  1BDV A;  1ARR A;  2K1O A;  3QOQ A;  1BAZ A;  2BJ7 A;  3VEB A;  1NLA A;  2BSQ E;  1Q5V A;  1IRQ A;  2BJ9 A;  3FMT A;  2K6L A;  2WVC A;  1MYK A;  1QTG A;  3FT7 A;  2GPE A;  3H87 C;  1EA4 A;  2HZA A;  2K29 A;  2BA3 A;  2CAX A;  2JXI A;  2H1O E;  2WVE A;  2CA9 A;  4ME7 E;  3VEA A;  1B01 A;  3OD2 A;  4HV0 A;  1PAR A;  4D8J A;  2BNW A;  2BNZ A;  2CAD A;  2BJ3 A;  2JXG A;  2K5J A;  2HZV A;  1B28 A;  1U9P A;  1MYL A;  2WVD A;  2JXH A;  2K9I A;  4FXE A;  2BJ8 A;  1ARQ A;  1P94 A;  3GXQ A;  2CPG A;  2AY0 A;  2KEL A;  3LGH A;  2WVB A; 
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