2CAXA

Structural basis for cooperative binding of ribbon-helix-helix repressor omega to mutated direct dna heptad repeats
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
53
structure length
53
Chain Sequence
MAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (20-24)AH3 (51-67)EMPTYAH2 (34-47)Updating...
connected with : NaN
molecule tags Transcriptional repressor
source organism Streptococcus pyogenes
publication title Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription.
pubmed doi rcsb
molecule keywords ORF OMEGA
total genus 15
structure length 53
sequence length 53
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-12-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2caxA00
2H1OE 2JXIA 2CAXA 1NLAA 2CAJA 2K29A 1EA4A 3VW4A 2WVFA 3FT7A 1X93A 1U9PA 3LGHA 1MYKA 1BAZA 2BJ3A 1ARRA 2WVCA 1B01A 3VEAA 3QOQA 2K1OA 2K5JA 1MNTA 3FMTA 4D8JA 2BNZA 1BDVA 2WVBA 2CA9A 2BSQE 4FXEA 2CPGA 2WVDA 2JXHA 4ME7E 2WVEA 3GXQA 3VEBA 1B28A 4HV0A 2BJ1A 2HZVA 2BNWA 1BDTA 1PARA 1ARQA 1IRQA 1QTGA 1MYLA 1Q5VA 2BJ8A 2KELA 1P94A 2JXGA 2BJ9A 2CADA 2K6LA 3OD2A 3H87C 2HZAA 2BJ7A 2RBFA 2BA3A 2K9IA 2GPEA 2AY0A
chains in the Genus database with same CATH superfamily
4MJWA 1SH3A 1NLAA 2CAJA 1SH2A 1B01A 2K5JA 4D8JA 2CA9A 4FXEA 3VEBA 2JXHA 4QPXA 1Q5VA 1QTGA 3LJPA 2KELA 4NRUA 3UR0A 2JXGA 3IR7A 2AY0A 4O4RA 3BSNA 1MYKA 3H5XA 1ARRA 3NAHA 2CKWA 4LQ9A 1OG7A 3FMTA 2H3AA 2WVBA 3GXQA 3BSOA 4ME7E 2WVEA 2BJ1A 2BNWA 1BDTA 2KOEA 2BJ9A 3OD2A 2K6LA 2BJ7A 2RBFA 2BA3A 2K9IA 2AN7A 4LQ3A 2JXIA 2ADLA 1SH0A 1EA4A 3VW4A 2WVFA 3H5YA 1X93A 1BAZA 2BJ3A 3VEAA 2K1OA 3UQSA 2BNZA 1SIWA 4AAIA 2BSQE 2WVDA 3SFUA 2HZVA 3NAIA 2KKEA 1ARQA 2Q2KA 4NRTA 3NNEA 4LRVA 2CADA 2HZAA 2JBVA 2WK4A 3NO7A 2H1OE 2CAXA 2K29A 2UUTA 2B43A 3FT7A 1U9PA 3LGHA 3QIDA 2WVCA 3UPFA 1Q16A 1OHNA 3QOQA 3SFGA 1MNTA 1BDVA 2CPGA 1B28A 4HV0A 1PARA 1IRQA 1MYLA 2BJ8A 1P94A 3G5OA 2A2BA 2UUWA 3H87C 2GPEA
chains in the Genus database with same CATH topology
2H1OE 2JXIA 2CAXA 1NLAA 2CAJA 2K29A 1EA4A 3VW4A 2WVFA 3FT7A 1X93A 1U9PA 3LGHA 1MYKA 1BAZA 2BJ3A 1ARRA 2WVCA 1B01A 3VEAA 3QOQA 2K1OA 2K5JA 1MNTA 3FMTA 4D8JA 2BNZA 1BDVA 2WVBA 2CA9A 2BSQE 4FXEA 2CPGA 2WVDA 2JXHA 4ME7E 2WVEA 3GXQA 3VEBA 1B28A 4HV0A 2BJ1A 2HZVA 2BNWA 1BDTA 1PARA 1ARQA 1IRQA 1QTGA 1MYLA 1Q5VA 2BJ8A 2KELA 1P94A 2JXGA 2BJ9A 2CADA 2K6LA 3OD2A 3H87C 2HZAA 2BJ7A 2RBFA 2BA3A 2K9IA 2GPEA 2AY0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H1O E;  2JXI A;  2CAX A;  1NLA A;  2CAJ A;  2K29 A;  1EA4 A;  3VW4 A;  2WVF A;  3FT7 A;  1X93 A;  1U9P A;  3LGH A;  1MYK A;  1BAZ A;  2BJ3 A;  1ARR A;  2WVC A;  1B01 A;  3VEA A;  3QOQ A;  2K1O A;  2K5J A;  1MNT A;  3FMT A;  4D8J A;  2BNZ A;  1BDV A;  2WVB A;  2CA9 A;  2BSQ E;  4FXE A;  2CPG A;  2WVD A;  2JXH A;  4ME7 E;  2WVE A;  3GXQ A;  3VEB A;  1B28 A;  4HV0 A;  2BJ1 A;  2HZV A;  2BNW A;  1BDT A;  1PAR A;  1ARQ A;  1IRQ A;  1QTG A;  1MYL A;  1Q5V A;  2BJ8 A;  2KEL A;  1P94 A;  2JXG A;  2BJ9 A;  2CAD A;  2K6L A;  3OD2 A;  3H87 C;  2HZA A;  2BJ7 A;  2RBF A;  2BA3 A;  2K9I A;  2GPE A;  2AY0 A; 
#chains in the Genus database with same CATH topology
 4MJW A;  1SH3 A;  1NLA A;  2CAJ A;  1SH2 A;  1B01 A;  2K5J A;  4D8J A;  2CA9 A;  4FXE A;  3VEB A;  2JXH A;  4QPX A;  1Q5V A;  1QTG A;  3LJP A;  2KEL A;  4NRU A;  3UR0 A;  2JXG A;  3IR7 A;  2AY0 A;  4O4R A;  3BSN A;  1MYK A;  3H5X A;  1ARR A;  3NAH A;  2CKW A;  4LQ9 A;  1OG7 A;  3FMT A;  2H3A A;  2WVB A;  3GXQ A;  3BSO A;  4ME7 E;  2WVE A;  2BJ1 A;  2BNW A;  1BDT A;  2KOE A;  2BJ9 A;  3OD2 A;  2K6L A;  2BJ7 A;  2RBF A;  2BA3 A;  2K9I A;  2AN7 A;  4LQ3 A;  2JXI A;  2ADL A;  1SH0 A;  1EA4 A;  3VW4 A;  2WVF A;  3H5Y A;  1X93 A;  1BAZ A;  2BJ3 A;  3VEA A;  2K1O A;  3UQS A;  2BNZ A;  1SIW A;  4AAI A;  2BSQ E;  2WVD A;  3SFU A;  2HZV A;  3NAI A;  2KKE A;  1ARQ A;  2Q2K A;  4NRT A;  3NNE A;  4LRV A;  2CAD A;  2HZA A;  2JBV A;  2WK4 A;  3NO7 A;  2H1O E;  2CAX A;  2K29 A;  2UUT A;  2B43 A;  3FT7 A;  1U9P A;  3LGH A;  3QID A;  2WVC A;  3UPF A;  1Q16 A;  1OHN A;  3QOQ A;  3SFG A;  1MNT A;  1BDV A;  2CPG A;  1B28 A;  4HV0 A;  1PAR A;  1IRQ A;  1MYL A;  2BJ8 A;  1P94 A;  3G5O A;  2A2B A;  2UUW A;  3H87 C;  2GPE A; 
#chains in the Genus database with same CATH homology
 2H1O E;  2JXI A;  2CAX A;  1NLA A;  2CAJ A;  2K29 A;  1EA4 A;  3VW4 A;  2WVF A;  3FT7 A;  1X93 A;  1U9P A;  3LGH A;  1MYK A;  1BAZ A;  2BJ3 A;  1ARR A;  2WVC A;  1B01 A;  3VEA A;  3QOQ A;  2K1O A;  2K5J A;  1MNT A;  3FMT A;  4D8J A;  2BNZ A;  1BDV A;  2WVB A;  2CA9 A;  2BSQ E;  4FXE A;  2CPG A;  2WVD A;  2JXH A;  4ME7 E;  2WVE A;  3GXQ A;  3VEB A;  1B28 A;  4HV0 A;  2BJ1 A;  2HZV A;  2BNW A;  1BDT A;  1PAR A;  1ARQ A;  1IRQ A;  1QTG A;  1MYL A;  1Q5V A;  2BJ8 A;  2KEL A;  1P94 A;  2JXG A;  2BJ9 A;  2CAD A;  2K6L A;  3OD2 A;  3H87 C;  2HZA A;  2BJ7 A;  2RBF A;  2BA3 A;  2K9I A;  2GPE A;  2AY0 A; 
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