2GPEA

Structure of the dna-binding domain of e. coli proline utilization a (puta)
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
47
structure length
47
Chain Sequence
GTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Escherichia coli
molecule keywords Bifunctional protein putA
total genus 14
structure length 47
sequence length 47
chains with identical sequence B, C, D
ec nomenclature ec 1.2.1.88: L-glutamate gamma-semialdehyde dehydrogenase.
pdb deposition date 2006-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2gpeA01
2K9IA 2WVEA 2BNWA 3FT7A 2BA3A 1X93A 4FXEA 3VEBA 1B28A 1MNTA 2JXHA 2JXGA 1B01A 2JXIA 1ARQA 1BAZA 2AY0A 2WVDA 1MYLA 4ME7E 2WVCA 3OD2A 1EA4A 1U9PA 2HZAA 2BJ3A 3GXQA 2CPGA 3FMTA 3QOQA 3VW4A 3LGHA 2BJ9A 1IRQA 2BJ8A 2CADA 2K5JA 2BSQE 2GPEA 1MYKA 1QTGA 2CA9A 1BDTA 1NLAA 2BJ1A 2CAJA 2HZVA 3H87C 2WVFA 3VEAA 2K6LA 1BDVA 2CAXA 2BNZA 4HV0A 4D8JA 2WVBA 2K29A 2KELA 2BJ7A 1Q5VA 2K1OA 2RBFA 1P94A 1ARRA 2H1OE 1PARA
chains in the Genus database with same CATH superfamily
2B43A 4LRVA 2K9IA 3SFUA 2BNWA 4NRUA 4FXEA 1ARQA 3IR7A 1B01A 3H5XA 1OHNA 2H3AA 3OD2A 3UQSA 4NRTA 2UUTA 2CADA 1NLAA 2BJ1A 2HZVA 3H87C 4MJWA 3UPFA 2CAXA 2BNZA 3NAIA 1OG7A 2WVBA 2K29A 1Q5VA 4AAIA 2RBFA 1P94A 3UR0A 2JBVA 4QPXA 3SFGA 2AN7A 3FT7A 3NO7A 2JXHA 1BAZA 4O4RA 1MYLA 1SIWA 2WVCA 2HZAA 2Q2KA 3QOQA 2CPGA 3FMTA 3VW4A 3LGHA 2BJ9A 3NAHA 2UUWA 2KKEA 1IRQA 2BJ8A 2K5JA 2CKWA 2KOEA 2WVFA 4HV0A 1ARRA 1PARA 1SH2A 2A2BA 3VEBA 1B28A 2JXGA 4ME7E 1EA4A 2BJ3A 3H5YA 3QIDA 2GPEA 1MYKA 1QTGA 1BDTA 2CAJA 1SH0A 3VEAA 2K6LA 4D8JA 2KELA 2K1OA 2H1OE 2WVEA 2BA3A 1X93A 1MNTA 4LQ9A 2JXIA 2WVDA 2AY0A 3BSOA 1U9PA 3GXQA 3NNEA 3BSNA 2BSQE 2CA9A 3G5OA 2WK4A 1SH3A 2ADLA 3LJPA 1BDVA 2BJ7A 4LQ3A 1Q16A
chains in the Genus database with same CATH topology
2K9IA 2WVEA 2BNWA 3FT7A 2BA3A 1X93A 4FXEA 3VEBA 1B28A 1MNTA 2JXHA 2JXGA 1B01A 2JXIA 1ARQA 1BAZA 2AY0A 2WVDA 1MYLA 4ME7E 2WVCA 3OD2A 1EA4A 1U9PA 2HZAA 2BJ3A 3GXQA 2CPGA 3FMTA 3QOQA 3VW4A 3LGHA 2BJ9A 1IRQA 2BJ8A 2CADA 2K5JA 2BSQE 2GPEA 1MYKA 1QTGA 2CA9A 1BDTA 1NLAA 2BJ1A 2CAJA 2HZVA 3H87C 2WVFA 3VEAA 2K6LA 1BDVA 2CAXA 2BNZA 4HV0A 4D8JA 2WVBA 2K29A 2KELA 2BJ7A 1Q5VA 2K1OA 2RBFA 1P94A 1ARRA 2H1OE 1PARA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K9I A;  2WVE A;  2BNW A;  3FT7 A;  2BA3 A;  1X93 A;  4FXE A;  3VEB A;  1B28 A;  1MNT A;  2JXH A;  2JXG A;  1B01 A;  2JXI A;  1ARQ A;  1BAZ A;  2AY0 A;  2WVD A;  1MYL A;  4ME7 E;  2WVC A;  3OD2 A;  1EA4 A;  1U9P A;  2HZA A;  2BJ3 A;  3GXQ A;  2CPG A;  3FMT A;  3QOQ A;  3VW4 A;  3LGH A;  2BJ9 A;  1IRQ A;  2BJ8 A;  2CAD A;  2K5J A;  2BSQ E;  2GPE A;  1MYK A;  1QTG A;  2CA9 A;  1BDT A;  1NLA A;  2BJ1 A;  2CAJ A;  2HZV A;  3H87 C;  2WVF A;  3VEA A;  2K6L A;  1BDV A;  2CAX A;  2BNZ A;  4HV0 A;  4D8J A;  2WVB A;  2K29 A;  2KEL A;  2BJ7 A;  1Q5V A;  2K1O A;  2RBF A;  1P94 A;  1ARR A;  2H1O E;  1PAR A; 
#chains in the Genus database with same CATH topology
 2B43 A;  4LRV A;  2K9I A;  3SFU A;  2BNW A;  4NRU A;  4FXE A;  1ARQ A;  3IR7 A;  1B01 A;  3H5X A;  1OHN A;  2H3A A;  3OD2 A;  3UQS A;  4NRT A;  2UUT A;  2CAD A;  1NLA A;  2BJ1 A;  2HZV A;  3H87 C;  4MJW A;  3UPF A;  2CAX A;  2BNZ A;  3NAI A;  1OG7 A;  2WVB A;  2K29 A;  1Q5V A;  4AAI A;  2RBF A;  1P94 A;  3UR0 A;  2JBV A;  4QPX A;  3SFG A;  2AN7 A;  3FT7 A;  3NO7 A;  2JXH A;  1BAZ A;  4O4R A;  1MYL A;  1SIW A;  2WVC A;  2HZA A;  2Q2K A;  3QOQ A;  2CPG A;  3FMT A;  3VW4 A;  3LGH A;  2BJ9 A;  3NAH A;  2UUW A;  2KKE A;  1IRQ A;  2BJ8 A;  2K5J A;  2CKW A;  2KOE A;  2WVF A;  4HV0 A;  1ARR A;  1PAR A;  1SH2 A;  2A2B A;  3VEB A;  1B28 A;  2JXG A;  4ME7 E;  1EA4 A;  2BJ3 A;  3H5Y A;  3QID A;  2GPE A;  1MYK A;  1QTG A;  1BDT A;  2CAJ A;  1SH0 A;  3VEA A;  2K6L A;  4D8J A;  2KEL A;  2K1O A;  2H1O E;  2WVE A;  2BA3 A;  1X93 A;  1MNT A;  4LQ9 A;  2JXI A;  2WVD A;  2AY0 A;  3BSO A;  1U9P A;  3GXQ A;  3NNE A;  3BSN A;  2BSQ E;  2CA9 A;  3G5O A;  2WK4 A;  1SH3 A;  2ADL A;  3LJP A;  1BDV A;  2BJ7 A;  4LQ3 A;  1Q16 A; 
#chains in the Genus database with same CATH homology
 2K9I A;  2WVE A;  2BNW A;  3FT7 A;  2BA3 A;  1X93 A;  4FXE A;  3VEB A;  1B28 A;  1MNT A;  2JXH A;  2JXG A;  1B01 A;  2JXI A;  1ARQ A;  1BAZ A;  2AY0 A;  2WVD A;  1MYL A;  4ME7 E;  2WVC A;  3OD2 A;  1EA4 A;  1U9P A;  2HZA A;  2BJ3 A;  3GXQ A;  2CPG A;  3FMT A;  3QOQ A;  3VW4 A;  3LGH A;  2BJ9 A;  1IRQ A;  2BJ8 A;  2CAD A;  2K5J A;  2BSQ E;  2GPE A;  1MYK A;  1QTG A;  2CA9 A;  1BDT A;  1NLA A;  2BJ1 A;  2CAJ A;  2HZV A;  3H87 C;  2WVF A;  3VEA A;  2K6L A;  1BDV A;  2CAX A;  2BNZ A;  4HV0 A;  4D8J A;  2WVB A;  2K29 A;  2KEL A;  2BJ7 A;  1Q5V A;  2K1O A;  2RBF A;  1P94 A;  1ARR A;  2H1O E;  1PAR A; 
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similar chains in the Genus database (?% sequence similarity)
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