2H3A | Genus

Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	72
structure length	72
Chain Sequence	MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKVENQEGMVEVARFIEMNGSFADENKDW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system/dna
source organism	Escherichia coli
publication title	Structural Basis for Nucleic Acid and Toxin Recognition of the Bacterial Antitoxin CcdA pubmed doi rcsb
molecule keywords	5'-D(PAPTPAPTPGPTPAPTPAPCPCPCP*G)-3'
total genus	8
structure length	72
sequence length	72
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-05-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07362	CcdA	Post-segregation antitoxin CcdA

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.80	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	2h3aA01

2ADLA 2H3AA
chains in the Genus database with same CATH superfamily

3LGHA 3LJPA 2BJ9A 2AN7A 3SFGA 3VEBA 1U9PA 1NLAA 1MYKA 4NRTA 3H87C 2H3AA 2BNZA 2KOEA 2BJ3A 3BSNA 2WVDA 2K5JA 1EA4A 2WVEA 2BSQE 2CPGA 4ME7E 1ARQA 4O4RA 3VEAA 2A2BA 3FMTA 3G5OA 3H5XA 3NAIA 4D8JA 4FXEA 2B43A 2WVBA 1SH2A 4AAIA 1BDTA 3VW4A 2HZVA 2BJ1A 2K1OA 1ARRA 3NAHA 3FT7A 3NNEA 2CA9A 4MJWA 2WVFA 2WVCA 1QTGA 1MYLA 3UPFA 4LQ3A 1BDVA 4LQ9A 2UUWA 1Q16A 2Q2KA 2H1OE 1SH0A 2WK4A 1MNTA 2JXGA 2BA3A 2BJ7A 3BSOA 1B28A 2JXIA 1IRQA 2JBVA 1OG7A 2K29A 2CAJA 1OHNA 1SH3A 4NRUA 2BNWA 2HZAA 3UR0A 1P94A 2KELA 3UQSA 3OD2A 1B01A 3NO7A 1PARA 1SIWA 2KKEA 3IR7A 1Q5VA 1X93A 2JXHA 2AY0A 2RBFA 3QOQA 2CADA 2ADLA 4LRVA 2CKWA 4QPXA 2CAXA 2GPEA 1BAZA 2UUTA 3SFUA 2BJ8A 3GXQA 4HV0A 2K9IA 3QIDA 3H5YA 2K6LA
chains in the Genus database with same CATH topology

2Q2KA 3G5OA 3IR7A 1SH0A 2WK4A 3LJPA 4LQ9A 3H5XA 3NAIA 2B43A 2AN7A 1SH2A 3BSOA 4AAIA 2ADLA 4LRVA 3SFGA 2CKWA 2JBVA 4QPXA 1Q16A 1OG7A 4NRTA 3NAHA 1OHNA 2H3AA 1SH3A 2UUTA 2KOEA 3NNEA 4NRUA 3SFUA 3BSNA 3UR0A 4MJWA 3UQSA 3UPFA 4LQ3A 3QIDA 3H5YA 3NO7A 4O4RA 1SIWA 2UUWA 2KKEA 2A2BA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2ADL A;  2H3A A; 
#chains in the Genus database with same CATH topology
 3LGH A;  3LJP A;  2BJ9 A;  2AN7 A;  3SFG A;  3VEB A;  1U9P A;  1NLA A;  1MYK A;  4NRT A;  3H87 C;  2H3A A;  2BNZ A;  2KOE A;  2BJ3 A;  3BSN A;  2WVD A;  2K5J A;  1EA4 A;  2WVE A;  2BSQ E;  2CPG A;  4ME7 E;  1ARQ A;  4O4R A;  3VEA A;  2A2B A;  3FMT A;  3G5O A;  3H5X A;  3NAI A;  4D8J A;  4FXE A;  2B43 A;  2WVB A;  1SH2 A;  4AAI A;  1BDT A;  3VW4 A;  2HZV A;  2BJ1 A;  2K1O A;  1ARR A;  3NAH A;  3FT7 A;  3NNE A;  2CA9 A;  4MJW A;  2WVF A;  2WVC A;  1QTG A;  1MYL A;  3UPF A;  4LQ3 A;  1BDV A;  4LQ9 A;  2UUW A;  1Q16 A;  2Q2K A;  2H1O E;  1SH0 A;  2WK4 A;  1MNT A;  2JXG A;  2BA3 A;  2BJ7 A;  3BSO A;  1B28 A;  2JXI A;  1IRQ A;  2JBV A;  1OG7 A;  2K29 A;  2CAJ A;  1OHN A;  1SH3 A;  4NRU A;  2BNW A;  2HZA A;  3UR0 A;  1P94 A;  2KEL A;  3UQS A;  3OD2 A;  1B01 A;  3NO7 A;  1PAR A;  1SIW A;  2KKE A;  3IR7 A;  1Q5V A;  1X93 A;  2JXH A;  2AY0 A;  2RBF A;  3QOQ A;  2CAD A;  2ADL A;  4LRV A;  2CKW A;  4QPX A;  2CAX A;  2GPE A;  1BAZ A;  2UUT A;  3SFU A;  2BJ8 A;  3GXQ A;  4HV0 A;  2K9I A;  3QID A;  3H5Y A;  2K6L A; 
#chains in the Genus database with same CATH homology
 2Q2K A;  3G5O A;  3IR7 A;  1SH0 A;  2WK4 A;  3LJP A;  4LQ9 A;  3H5X A;  3NAI A;  2B43 A;  2AN7 A;  1SH2 A;  3BSO A;  4AAI A;  2ADL A;  4LRV A;  3SFG A;  2CKW A;  2JBV A;  4QPX A;  1Q16 A;  1OG7 A;  4NRT A;  3NAH A;  1OHN A;  2H3A A;  1SH3 A;  2UUT A;  2KOE A;  3NNE A;  4NRU A;  3SFU A;  3BSN A;  3UR0 A;  4MJW A;  3UQS A;  3UPF A;  4LQ3 A;  3QID A;  3H5Y A;  3NO7 A;  4O4R A;  1SIW A;  2UUW A;  2KKE A;  2A2B A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2H3AA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations