2JXI | Genus

Total Genus 13

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	45
structure length	45
Chain Sequence	MATTTLGVKLDDPTRERLKAAAQSIDRTPHWLIKQAIFNYLEKLE

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__4903446307181292__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__4903446307181292__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2JXI/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__4903446307181292__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"4903446307181292","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2JXI/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__4903446307181292__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein, dna
publication title	Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex pubmed doi rcsb
molecule keywords	Proline dehydrogenase
total genus	13
structure length	45
sequence length	45
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-11-19

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	2jxiA01

3GXQA 2K9IA 2BA3A 2AY0A 2BJ8A 2CPGA 2KELA 2HZVA 2JXIA 2K29A 1BDVA 2BSQE 1X93A 1ARRA 1IRQA 1PARA 2WVBA 3FT7A 3VEBA 2BJ7A 1U9PA 1BDTA 1MNTA 1P94A 1B28A 4FXEA 3VW4A 3LGHA 2GPEA 1ARQA 2WVDA 2CAJA 2CAXA 2BJ3A 2BNWA 1NLAA 4ME7E 2JXGA 2BJ1A 2BJ9A 2WVCA 1MYLA 1MYKA 2H1OE 3FMTA 1B01A 2WVFA 3QOQA 1QTGA 2JXHA 2K6LA 3H87C 3OD2A 4HV0A 3VEAA 4D8JA 1EA4A 2CA9A 2RBFA 2K5JA 2HZAA 1Q5VA 2K1OA 2BNZA 2WVEA 2CADA 1BAZA
chains in the Genus database with same CATH superfamily

2K9IA 4MJWA 3UPFA 4QPXA 1ARRA 4LQ3A 2BJ7A 1U9PA 1B28A 2Q2KA 3NAHA 1SIWA 4ME7E 2WVFA 2UUTA 3IR7A 2AN7A 2JXHA 2K6LA 2KOEA 1EA4A 3SFGA 4LQ9A 4NRTA 1Q5VA 2WK4A 2A2BA 2H3AA 3GXQA 2CPGA 2K29A 2BSQE 3G5OA 2UUWA 4LRVA 2WVBA 3QIDA 3UQSA 4FXEA 3LGHA 3H5XA 2WVDA 2CAJA 2BJ3A 1SH0A 2BJ1A 2WVCA 2JBVA 1MYLA 1MYKA 1Q16A 4NRUA 2HZAA 2BNZA 3VW4A 2CADA 1BAZA 3NO7A 2B43A 2BA3A 2AY0A 2BJ8A 2KKEA 2JXIA 1OG7A 1SH3A 1PARA 1P94A 3LJPA 3SFUA 4O4RA 4AAIA 2CAXA 1NLAA 2JXGA 3FMTA 1B01A 3QOQA 3H87C 3VEAA 3OD2A 2RBFA 2K5JA 2CKWA 3UR0A 2KELA 3H5YA 2HZVA 1BDVA 3NAIA 1X93A 1IRQA 3BSOA 3FT7A 3VEBA 1BDTA 1MNTA 2GPEA 3NNEA 2ADLA 1ARQA 2BNWA 1OHNA 1SH2A 2BJ9A 2H1OE 3BSNA 1QTGA 4HV0A 4D8JA 2CA9A 2K1OA 2WVEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3GXQ A;  2K9I A;  2BA3 A;  2AY0 A;  2BJ8 A;  2CPG A;  2KEL A;  2HZV A;  2JXI A;  2K29 A;  1BDV A;  2BSQ E;  1X93 A;  1ARR A;  1IRQ A;  1PAR A;  2WVB A;  3FT7 A;  3VEB A;  2BJ7 A;  1U9P A;  1BDT A;  1MNT A;  1P94 A;  1B28 A;  4FXE A;  3VW4 A;  3LGH A;  2GPE A;  1ARQ A;  2WVD A;  2CAJ A;  2CAX A;  2BJ3 A;  2BNW A;  1NLA A;  4ME7 E;  2JXG A;  2BJ1 A;  2BJ9 A;  2WVC A;  1MYL A;  1MYK A;  2H1O E;  3FMT A;  1B01 A;  2WVF A;  3QOQ A;  1QTG A;  2JXH A;  2K6L A;  3H87 C;  3OD2 A;  4HV0 A;  3VEA A;  4D8J A;  1EA4 A;  2CA9 A;  2RBF A;  2K5J A;  2HZA A;  1Q5V A;  2K1O A;  2BNZ A;  2WVE A;  2CAD A;  1BAZ A; 
#chains in the Genus database with same CATH topology
 2K9I A;  4MJW A;  3UPF A;  4QPX A;  1ARR A;  4LQ3 A;  2BJ7 A;  1U9P A;  1B28 A;  2Q2K A;  3NAH A;  1SIW A;  4ME7 E;  2WVF A;  2UUT A;  3IR7 A;  2AN7 A;  2JXH A;  2K6L A;  2KOE A;  1EA4 A;  3SFG A;  4LQ9 A;  4NRT A;  1Q5V A;  2WK4 A;  2A2B A;  2H3A A;  3GXQ A;  2CPG A;  2K29 A;  2BSQ E;  3G5O A;  2UUW A;  4LRV A;  2WVB A;  3QID A;  3UQS A;  4FXE A;  3LGH A;  3H5X A;  2WVD A;  2CAJ A;  2BJ3 A;  1SH0 A;  2BJ1 A;  2WVC A;  2JBV A;  1MYL A;  1MYK A;  1Q16 A;  4NRU A;  2HZA A;  2BNZ A;  3VW4 A;  2CAD A;  1BAZ A;  3NO7 A;  2B43 A;  2BA3 A;  2AY0 A;  2BJ8 A;  2KKE A;  2JXI A;  1OG7 A;  1SH3 A;  1PAR A;  1P94 A;  3LJP A;  3SFU A;  4O4R A;  4AAI A;  2CAX A;  1NLA A;  2JXG A;  3FMT A;  1B01 A;  3QOQ A;  3H87 C;  3VEA A;  3OD2 A;  2RBF A;  2K5J A;  2CKW A;  3UR0 A;  2KEL A;  3H5Y A;  2HZV A;  1BDV A;  3NAI A;  1X93 A;  1IRQ A;  3BSO A;  3FT7 A;  3VEB A;  1BDT A;  1MNT A;  2GPE A;  3NNE A;  2ADL A;  1ARQ A;  2BNW A;  1OHN A;  1SH2 A;  2BJ9 A;  2H1O E;  3BSN A;  1QTG A;  4HV0 A;  4D8J A;  2CA9 A;  2K1O A;  2WVE A; 
#chains in the Genus database with same CATH homology
 3GXQ A;  2K9I A;  2BA3 A;  2AY0 A;  2BJ8 A;  2CPG A;  2KEL A;  2HZV A;  2JXI A;  2K29 A;  1BDV A;  2BSQ E;  1X93 A;  1ARR A;  1IRQ A;  1PAR A;  2WVB A;  3FT7 A;  3VEB A;  2BJ7 A;  1U9P A;  1BDT A;  1MNT A;  1P94 A;  1B28 A;  4FXE A;  3VW4 A;  3LGH A;  2GPE A;  1ARQ A;  2WVD A;  2CAJ A;  2CAX A;  2BJ3 A;  2BNW A;  1NLA A;  4ME7 E;  2JXG A;  2BJ1 A;  2BJ9 A;  2WVC A;  1MYL A;  1MYK A;  2H1O E;  3FMT A;  1B01 A;  2WVF A;  3QOQ A;  1QTG A;  2JXH A;  2K6L A;  3H87 C;  3OD2 A;  4HV0 A;  3VEA A;  4D8J A;  1EA4 A;  2CA9 A;  2RBF A;  2K5J A;  2HZA A;  1Q5V A;  2K1O A;  2BNZ A;  2WVE A;  2CAD A;  1BAZ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2JXIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN