2K1OA

Nmr structure of helicobacter pylori jhp0511 (hp0564).
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
54
structure length
54
Chain Sequence
KRNFSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSIN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (46-48)AH2 (49-61)AH1 (32-44)Updating...
connected with : NaN
molecule tags Gene regulation
source organism Helicobacter pylori
publication title Structure of HP0564 from Helicobacter pylori identifies it as a new transcriptional regulator.
pubmed doi rcsb
molecule keywords Putative
total genus 12
structure length 54
sequence length 54
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-03-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k1oA00
2JXHA 2JXIA 1IRQA 1ARRA 4HV0A 2K9IA 2CA9A 3VEAA 2KELA 2WVFA 3OD2A 4ME7E 2CPGA 2CAJA 1X93A 2BA3A 2BJ7A 1EA4A 1BDTA 3VW4A 2GPEA 2WVCA 3FT7A 1NLAA 2CADA 3FMTA 2BJ1A 2CAXA 2K5JA 1B28A 2WVEA 1BAZA 4D8JA 1QTGA 1Q5VA 1MYLA 2AY0A 3GXQA 3QOQA 1ARQA 2BJ8A 1BDVA 2BJ3A 2K29A 2RBFA 1PARA 1MNTA 2WVBA 2BNZA 2HZVA 2HZAA 2H1OE 2K6LA 3VEBA 2K1OA 2JXGA 2BJ9A 4FXEA 3LGHA 1P94A 2BNWA 2BSQE 3H87C 1U9PA 1B01A 1MYKA 2WVDA
chains in the Genus database with same CATH superfamily
3VEAA 2KELA 2CAJA 1X93A 2JBVA 3BSNA 1OHNA 3H5YA 2WVEA 1OG7A 1MYLA 2AN7A 1SIWA 2AY0A 1BDVA 2BJ3A 2RBFA 2BNZA 2HZAA 3UPFA 1P94A 2BNWA 2UUTA 3H87C 1SH0A 4LRVA 4LQ3A 1B01A 1Q16A 3UR0A 2JXHA 2JXIA 2KKEA 1IRQA 1ARRA 3G5OA 1EA4A 4O4RA 2WVCA 2CKWA 2BJ1A 1ARQA 3BSOA 1PARA 1MNTA 4FXEA 3NAHA 4LQ9A 2K9IA 2CA9A 2WVFA 4ME7E 2CPGA 1SH2A 1BDTA 2GPEA 3FMTA 4AAIA 2ADLA 2CAXA 2K5JA 3UQSA 4D8JA 1Q5VA 2BJ8A 3IR7A 3NNEA 4MJWA 2K29A 2WVBA 2H1OE 3H5XA 2WK4A 2JXGA 3SFGA 3LGHA 4QPXA 2BSQE 1MYKA 2Q2KA 2B43A 4HV0A 3OD2A 2BA3A 2BJ7A 3NAIA 3SFUA 2A2BA 3VW4A 3FT7A 1NLAA 2CADA 2H3AA 3NO7A 1B28A 4NRUA 3QOQA 1BAZA 2KOEA 1QTGA 3GXQA 2HZVA 2K6LA 3VEBA 2K1OA 2BJ9A 1SH3A 3QIDA 3LJPA 4NRTA 1U9PA 2UUWA 2WVDA
chains in the Genus database with same CATH topology
2JXHA 2JXIA 1IRQA 1ARRA 4HV0A 2K9IA 2CA9A 3VEAA 2KELA 2WVFA 3OD2A 4ME7E 2CPGA 2CAJA 1X93A 2BA3A 2BJ7A 1EA4A 1BDTA 3VW4A 2GPEA 2WVCA 3FT7A 1NLAA 2CADA 3FMTA 2BJ1A 2CAXA 2K5JA 1B28A 2WVEA 1BAZA 4D8JA 1QTGA 1Q5VA 1MYLA 2AY0A 3GXQA 3QOQA 1ARQA 2BJ8A 1BDVA 2BJ3A 2K29A 2RBFA 1PARA 1MNTA 2WVBA 2BNZA 2HZVA 2HZAA 2H1OE 2K6LA 3VEBA 2K1OA 2JXGA 2BJ9A 4FXEA 3LGHA 1P94A 2BNWA 2BSQE 3H87C 1U9PA 1B01A 1MYKA 2WVDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JXH A;  2JXI A;  1IRQ A;  1ARR A;  4HV0 A;  2K9I A;  2CA9 A;  3VEA A;  2KEL A;  2WVF A;  3OD2 A;  4ME7 E;  2CPG A;  2CAJ A;  1X93 A;  2BA3 A;  2BJ7 A;  1EA4 A;  1BDT A;  3VW4 A;  2GPE A;  2WVC A;  3FT7 A;  1NLA A;  2CAD A;  3FMT A;  2BJ1 A;  2CAX A;  2K5J A;  1B28 A;  2WVE A;  1BAZ A;  4D8J A;  1QTG A;  1Q5V A;  1MYL A;  2AY0 A;  3GXQ A;  3QOQ A;  1ARQ A;  2BJ8 A;  1BDV A;  2BJ3 A;  2K29 A;  2RBF A;  1PAR A;  1MNT A;  2WVB A;  2BNZ A;  2HZV A;  2HZA A;  2H1O E;  2K6L A;  3VEB A;  2K1O A;  2JXG A;  2BJ9 A;  4FXE A;  3LGH A;  1P94 A;  2BNW A;  2BSQ E;  3H87 C;  1U9P A;  1B01 A;  1MYK A;  2WVD A; 
#chains in the Genus database with same CATH topology
 3VEA A;  2KEL A;  2CAJ A;  1X93 A;  2JBV A;  3BSN A;  1OHN A;  3H5Y A;  2WVE A;  1OG7 A;  1MYL A;  2AN7 A;  1SIW A;  2AY0 A;  1BDV A;  2BJ3 A;  2RBF A;  2BNZ A;  2HZA A;  3UPF A;  1P94 A;  2BNW A;  2UUT A;  3H87 C;  1SH0 A;  4LRV A;  4LQ3 A;  1B01 A;  1Q16 A;  3UR0 A;  2JXH A;  2JXI A;  2KKE A;  1IRQ A;  1ARR A;  3G5O A;  1EA4 A;  4O4R A;  2WVC A;  2CKW A;  2BJ1 A;  1ARQ A;  3BSO A;  1PAR A;  1MNT A;  4FXE A;  3NAH A;  4LQ9 A;  2K9I A;  2CA9 A;  2WVF A;  4ME7 E;  2CPG A;  1SH2 A;  1BDT A;  2GPE A;  3FMT A;  4AAI A;  2ADL A;  2CAX A;  2K5J A;  3UQS A;  4D8J A;  1Q5V A;  2BJ8 A;  3IR7 A;  3NNE A;  4MJW A;  2K29 A;  2WVB A;  2H1O E;  3H5X A;  2WK4 A;  2JXG A;  3SFG A;  3LGH A;  4QPX A;  2BSQ E;  1MYK A;  2Q2K A;  2B43 A;  4HV0 A;  3OD2 A;  2BA3 A;  2BJ7 A;  3NAI A;  3SFU A;  2A2B A;  3VW4 A;  3FT7 A;  1NLA A;  2CAD A;  2H3A A;  3NO7 A;  1B28 A;  4NRU A;  3QOQ A;  1BAZ A;  2KOE A;  1QTG A;  3GXQ A;  2HZV A;  2K6L A;  3VEB A;  2K1O A;  2BJ9 A;  1SH3 A;  3QID A;  3LJP A;  4NRT A;  1U9P A;  2UUW A;  2WVD A; 
#chains in the Genus database with same CATH homology
 2JXH A;  2JXI A;  1IRQ A;  1ARR A;  4HV0 A;  2K9I A;  2CA9 A;  3VEA A;  2KEL A;  2WVF A;  3OD2 A;  4ME7 E;  2CPG A;  2CAJ A;  1X93 A;  2BA3 A;  2BJ7 A;  1EA4 A;  1BDT A;  3VW4 A;  2GPE A;  2WVC A;  3FT7 A;  1NLA A;  2CAD A;  3FMT A;  2BJ1 A;  2CAX A;  2K5J A;  1B28 A;  2WVE A;  1BAZ A;  4D8J A;  1QTG A;  1Q5V A;  1MYL A;  2AY0 A;  3GXQ A;  3QOQ A;  1ARQ A;  2BJ8 A;  1BDV A;  2BJ3 A;  2K29 A;  2RBF A;  1PAR A;  1MNT A;  2WVB A;  2BNZ A;  2HZV A;  2HZA A;  2H1O E;  2K6L A;  3VEB A;  2K1O A;  2JXG A;  2BJ9 A;  4FXE A;  3LGH A;  1P94 A;  2BNW A;  2BSQ E;  3H87 C;  1U9P A;  1B01 A;  1MYK A;  2WVD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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