2K29A

Structure of the dbd domain of e. coli antitoxin relb
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
50
structure length
50
Chain Sequence
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module.
pubmed doi rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords Antitoxin RelB
total genus 14
structure length 50
sequence length 50
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-03-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k29A00
2BNZA 1X93A 1ARQA 3LGHA 2GPEA 1IRQA 1MNTA 3FT7A 2CA9A 4HV0A 2BJ3A 2WVCA 1U9PA 2HZVA 2BJ1A 2K29A 2BJ9A 2BNWA 3OD2A 2CADA 2H1OE 2BJ7A 2JXHA 3VW4A 2BA3A 1BDVA 1NLAA 2CPGA 1ARRA 1Q5VA 2BJ8A 2CAJA 2K9IA 2WVEA 3H87C 2HZAA 1EA4A 1QTGA 4D8JA 2JXIA 2JXGA 2KELA 1P94A 2WVBA 2K5JA 4ME7E 2WVFA 3QOQA 1B28A 1MYKA 2K1OA 2BSQE 3GXQA 3VEAA 2AY0A 2WVDA 4FXEA 3FMTA 1MYLA 2RBFA 1BDTA 1PARA 1B01A 2K6LA 3VEBA 1BAZA 2CAXA
chains in the Genus database with same CATH superfamily
4LRVA 1OHNA 1IRQA 4QPXA 2WK4A 2BJ3A 2HZVA 3OD2A 2BJ7A 2BJ8A 2WVEA 1QTGA 3NO7A 2CKWA 2WVBA 3QOQA 3UR0A 3VEAA 2B43A 2WVDA 1MYLA 1SH2A 2CAXA 2KOEA 3NNEA 4MJWA 1X93A 3LGHA 4HV0A 4LQ9A 2WVCA 2K29A 2BJ9A 2CADA 2H1OE 3SFGA 1BDVA 1NLAA 2K9IA 1Q5VA 3H5YA 1MYKA 3NAHA 2AY0A 2AN7A 3FMTA 1BDTA 3NAIA 1B01A 2A2BA 3BSNA 2BNZA 2UUWA 2GPEA 2CA9A 3SFUA 2BNWA 3LJPA 3VW4A 3H87C 1ARRA 1EA4A 1Q16A 1SH0A 2HZAA 2JBVA 1SIWA 3UPFA 2K5JA 4ME7E 2WVFA 3QIDA 2K1OA 2BSQE 2KKEA 3GXQA 4FXEA 3VEBA 1ARQA 2Q2KA 1MNTA 1OG7A 3FT7A 2H3AA 1U9PA 2BJ1A 4O4RA 2JXHA 2BA3A 2UUTA 2CPGA 4AAIA 2CAJA 3H5XA 3G5OA 3BSOA 4D8JA 2JXIA 3UQSA 2JXGA 2KELA 1P94A 2ADLA 1B28A 4NRUA 1SH3A 3IR7A 4NRTA 4LQ3A 1PARA 2RBFA 2K6LA 1BAZA
chains in the Genus database with same CATH topology
2BNZA 1X93A 1ARQA 3LGHA 2GPEA 1IRQA 1MNTA 3FT7A 2CA9A 4HV0A 2BJ3A 2WVCA 1U9PA 2HZVA 2BJ1A 2K29A 2BJ9A 2BNWA 3OD2A 2CADA 2H1OE 2BJ7A 2JXHA 3VW4A 2BA3A 1BDVA 1NLAA 2CPGA 1ARRA 1Q5VA 2BJ8A 2CAJA 2K9IA 2WVEA 3H87C 2HZAA 1EA4A 1QTGA 4D8JA 2JXIA 2JXGA 2KELA 1P94A 2WVBA 2K5JA 4ME7E 2WVFA 3QOQA 1B28A 1MYKA 2K1OA 2BSQE 3GXQA 3VEAA 2AY0A 2WVDA 4FXEA 3FMTA 1MYLA 2RBFA 1BDTA 1PARA 1B01A 2K6LA 3VEBA 1BAZA 2CAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BNZ A;  1X93 A;  1ARQ A;  3LGH A;  2GPE A;  1IRQ A;  1MNT A;  3FT7 A;  2CA9 A;  4HV0 A;  2BJ3 A;  2WVC A;  1U9P A;  2HZV A;  2BJ1 A;  2K29 A;  2BJ9 A;  2BNW A;  3OD2 A;  2CAD A;  2H1O E;  2BJ7 A;  2JXH A;  3VW4 A;  2BA3 A;  1BDV A;  1NLA A;  2CPG A;  1ARR A;  1Q5V A;  2BJ8 A;  2CAJ A;  2K9I A;  2WVE A;  3H87 C;  2HZA A;  1EA4 A;  1QTG A;  4D8J A;  2JXI A;  2JXG A;  2KEL A;  1P94 A;  2WVB A;  2K5J A;  4ME7 E;  2WVF A;  3QOQ A;  1B28 A;  1MYK A;  2K1O A;  2BSQ E;  3GXQ A;  3VEA A;  2AY0 A;  2WVD A;  4FXE A;  3FMT A;  1MYL A;  2RBF A;  1BDT A;  1PAR A;  1B01 A;  2K6L A;  3VEB A;  1BAZ A;  2CAX A; 
#chains in the Genus database with same CATH topology
 4LRV A;  1OHN A;  1IRQ A;  4QPX A;  2WK4 A;  2BJ3 A;  2HZV A;  3OD2 A;  2BJ7 A;  2BJ8 A;  2WVE A;  1QTG A;  3NO7 A;  2CKW A;  2WVB A;  3QOQ A;  3UR0 A;  3VEA A;  2B43 A;  2WVD A;  1MYL A;  1SH2 A;  2CAX A;  2KOE A;  3NNE A;  4MJW A;  1X93 A;  3LGH A;  4HV0 A;  4LQ9 A;  2WVC A;  2K29 A;  2BJ9 A;  2CAD A;  2H1O E;  3SFG A;  1BDV A;  1NLA A;  2K9I A;  1Q5V A;  3H5Y A;  1MYK A;  3NAH A;  2AY0 A;  2AN7 A;  3FMT A;  1BDT A;  3NAI A;  1B01 A;  2A2B A;  3BSN A;  2BNZ A;  2UUW A;  2GPE A;  2CA9 A;  3SFU A;  2BNW A;  3LJP A;  3VW4 A;  3H87 C;  1ARR A;  1EA4 A;  1Q16 A;  1SH0 A;  2HZA A;  2JBV A;  1SIW A;  3UPF A;  2K5J A;  4ME7 E;  2WVF A;  3QID A;  2K1O A;  2BSQ E;  2KKE A;  3GXQ A;  4FXE A;  3VEB A;  1ARQ A;  2Q2K A;  1MNT A;  1OG7 A;  3FT7 A;  2H3A A;  1U9P A;  2BJ1 A;  4O4R A;  2JXH A;  2BA3 A;  2UUT A;  2CPG A;  4AAI A;  2CAJ A;  3H5X A;  3G5O A;  3BSO A;  4D8J A;  2JXI A;  3UQS A;  2JXG A;  2KEL A;  1P94 A;  2ADL A;  1B28 A;  4NRU A;  1SH3 A;  3IR7 A;  4NRT A;  4LQ3 A;  1PAR A;  2RBF A;  2K6L A;  1BAZ A; 
#chains in the Genus database with same CATH homology
 2BNZ A;  1X93 A;  1ARQ A;  3LGH A;  2GPE A;  1IRQ A;  1MNT A;  3FT7 A;  2CA9 A;  4HV0 A;  2BJ3 A;  2WVC A;  1U9P A;  2HZV A;  2BJ1 A;  2K29 A;  2BJ9 A;  2BNW A;  3OD2 A;  2CAD A;  2H1O E;  2BJ7 A;  2JXH A;  3VW4 A;  2BA3 A;  1BDV A;  1NLA A;  2CPG A;  1ARR A;  1Q5V A;  2BJ8 A;  2CAJ A;  2K9I A;  2WVE A;  3H87 C;  2HZA A;  1EA4 A;  1QTG A;  4D8J A;  2JXI A;  2JXG A;  2KEL A;  1P94 A;  2WVB A;  2K5J A;  4ME7 E;  2WVF A;  3QOQ A;  1B28 A;  1MYK A;  2K1O A;  2BSQ E;  3GXQ A;  3VEA A;  2AY0 A;  2WVD A;  4FXE A;  3FMT A;  1MYL A;  2RBF A;  1BDT A;  1PAR A;  1B01 A;  2K6L A;  3VEB A;  1BAZ A;  2CAX A; 
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similar chains in the Genus database (?% sequence similarity)
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