2K29 | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	50
structure length	50
Chain Sequence	MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Escherichia coli
publication title	Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module. pubmed doi rcsb
molecule keywords	Antitoxin RelB
total genus	14
structure length	50
sequence length	50
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-03-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	2k29A00

3QOQA 1IRQA 3GXQA 1ARQA 2BJ8A 1MYKA 2BNZA 2CAXA 2K1OA 2WVCA 1B01A 1BDVA 2HZVA 3VW4A 2BJ9A 1MYLA 1B28A 2HZAA 2BJ3A 4ME7E 2CA9A 3FMTA 3VEAA 4HV0A 2GPEA 1BAZA 3VEBA 2BNWA 2K6LA 1U9PA 3H87C 2H1OE 2AY0A 2CAJA 2BSQE 3OD2A 1QTGA 2CPGA 4D8JA 2JXHA 1P94A 2K9IA 3LGHA 2K29A 1X93A 2WVBA 2WVEA 2BJ7A 2WVFA 3FT7A 2JXIA 1PARA 1ARRA 2BJ1A 2KELA 4FXEA 1NLAA 2K5JA 1EA4A 1Q5VA 1BDTA 2JXGA 2RBFA 2CADA 2BA3A 2WVDA 1MNTA
chains in the Genus database with same CATH superfamily

3G5OA 3NAHA 1IRQA 3GXQA 4NRTA 1OG7A 4LQ3A 2BNZA 3IR7A 1B28A 2BJ3A 3NNEA 3FMTA 2GPEA 3NO7A 2AN7A 2CPGA 2Q2KA 4LQ9A 3UPFA 2K29A 1X93A 3FT7A 2BJ7A 3QIDA 4FXEA 1NLAA 2K5JA 2JXGA 3QOQA 2BJ8A 2CKWA 1MYKA 4LRVA 4NRUA 3UR0A 2CAXA 2KOEA 2K1OA 2A2BA 1BDVA 1SIWA 4QPXA 4ME7E 3H5YA 1U9PA 2UUWA 1Q16A 3UQSA 4D8JA 2WVEA 3SFUA 3LJPA 1ARRA 2KELA 3BSNA 1Q5VA 1BDTA 2WVDA 1ARQA 1B01A 2HZVA 2KKEA 3VW4A 2BJ9A 1MYLA 1SH2A 2HZAA 2CA9A 1SH0A 3SFGA 2BNWA 2WK4A 2K6LA 3H87C 2AY0A 2CAJA 2BSQE 1QTGA 2K9IA 2WVFA 3BSOA 2B43A 2WVBA 4O4RA 1SH3A 4AAIA 2JBVA 3H5XA 2WVCA 3VEAA 4HV0A 1BAZA 3VEBA 2UUTA 1OHNA 2H1OE 3OD2A 2JXHA 1P94A 3LGHA 2RBFA 2JXIA 1PARA 2BJ1A 1EA4A 2H3AA 3NAIA 2ADLA 4MJWA 2CADA 2BA3A 1MNTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3QOQ A;  1IRQ A;  3GXQ A;  1ARQ A;  2BJ8 A;  1MYK A;  2BNZ A;  2CAX A;  2K1O A;  2WVC A;  1B01 A;  1BDV A;  2HZV A;  3VW4 A;  2BJ9 A;  1MYL A;  1B28 A;  2HZA A;  2BJ3 A;  4ME7 E;  2CA9 A;  3FMT A;  3VEA A;  4HV0 A;  2GPE A;  1BAZ A;  3VEB A;  2BNW A;  2K6L A;  1U9P A;  3H87 C;  2H1O E;  2AY0 A;  2CAJ A;  2BSQ E;  3OD2 A;  1QTG A;  2CPG A;  4D8J A;  2JXH A;  1P94 A;  2K9I A;  3LGH A;  2K29 A;  1X93 A;  2WVB A;  2WVE A;  2BJ7 A;  2WVF A;  3FT7 A;  2JXI A;  1PAR A;  1ARR A;  2BJ1 A;  2KEL A;  4FXE A;  1NLA A;  2K5J A;  1EA4 A;  1Q5V A;  1BDT A;  2JXG A;  2RBF A;  2CAD A;  2BA3 A;  2WVD A;  1MNT A; 
#chains in the Genus database with same CATH topology
 3G5O A;  3NAH A;  1IRQ A;  3GXQ A;  4NRT A;  1OG7 A;  4LQ3 A;  2BNZ A;  3IR7 A;  1B28 A;  2BJ3 A;  3NNE A;  3FMT A;  2GPE A;  3NO7 A;  2AN7 A;  2CPG A;  2Q2K A;  4LQ9 A;  3UPF A;  2K29 A;  1X93 A;  3FT7 A;  2BJ7 A;  3QID A;  4FXE A;  1NLA A;  2K5J A;  2JXG A;  3QOQ A;  2BJ8 A;  2CKW A;  1MYK A;  4LRV A;  4NRU A;  3UR0 A;  2CAX A;  2KOE A;  2K1O A;  2A2B A;  1BDV A;  1SIW A;  4QPX A;  4ME7 E;  3H5Y A;  1U9P A;  2UUW A;  1Q16 A;  3UQS A;  4D8J A;  2WVE A;  3SFU A;  3LJP A;  1ARR A;  2KEL A;  3BSN A;  1Q5V A;  1BDT A;  2WVD A;  1ARQ A;  1B01 A;  2HZV A;  2KKE A;  3VW4 A;  2BJ9 A;  1MYL A;  1SH2 A;  2HZA A;  2CA9 A;  1SH0 A;  3SFG A;  2BNW A;  2WK4 A;  2K6L A;  3H87 C;  2AY0 A;  2CAJ A;  2BSQ E;  1QTG A;  2K9I A;  2WVF A;  3BSO A;  2B43 A;  2WVB A;  4O4R A;  1SH3 A;  4AAI A;  2JBV A;  3H5X A;  2WVC A;  3VEA A;  4HV0 A;  1BAZ A;  3VEB A;  2UUT A;  1OHN A;  2H1O E;  3OD2 A;  2JXH A;  1P94 A;  3LGH A;  2RBF A;  2JXI A;  1PAR A;  2BJ1 A;  1EA4 A;  2H3A A;  3NAI A;  2ADL A;  4MJW A;  2CAD A;  2BA3 A;  1MNT A; 
#chains in the Genus database with same CATH homology
 3QOQ A;  1IRQ A;  3GXQ A;  1ARQ A;  2BJ8 A;  1MYK A;  2BNZ A;  2CAX A;  2K1O A;  2WVC A;  1B01 A;  1BDV A;  2HZV A;  3VW4 A;  2BJ9 A;  1MYL A;  1B28 A;  2HZA A;  2BJ3 A;  4ME7 E;  2CA9 A;  3FMT A;  3VEA A;  4HV0 A;  2GPE A;  1BAZ A;  3VEB A;  2BNW A;  2K6L A;  1U9P A;  3H87 C;  2H1O E;  2AY0 A;  2CAJ A;  2BSQ E;  3OD2 A;  1QTG A;  2CPG A;  4D8J A;  2JXH A;  1P94 A;  2K9I A;  3LGH A;  2K29 A;  1X93 A;  2WVB A;  2WVE A;  2BJ7 A;  2WVF A;  3FT7 A;  2JXI A;  1PAR A;  1ARR A;  2BJ1 A;  2KEL A;  4FXE A;  1NLA A;  2K5J A;  1EA4 A;  1Q5V A;  1BDT A;  2JXG A;  2RBF A;  2CAD A;  2BA3 A;  2WVD A;  1MNT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K29A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN