2K29A

Structure of the dbd domain of e. coli antitoxin relb
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
50
structure length
50
Chain Sequence
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module.
pubmed doi rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords Antitoxin RelB
total genus 14
structure length 50
sequence length 50
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-03-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k29A00
2GPEA 2WVEA 1BDVA 1MNTA 1NLAA 2BA3A 1MYLA 2K29A 1PARA 2BJ3A 2K6LA 2WVDA 1ARQA 2BJ1A 2HZAA 2JXHA 2H1OE 1Q5VA 2AY0A 3FT7A 2RBFA 1EA4A 2JXIA 3VEBA 2HZVA 2BJ8A 4D8JA 2WVBA 4FXEA 2WVFA 3FMTA 3GXQA 4ME7E 1ARRA 1P94A 2CAJA 2BJ9A 2K9IA 2CAXA 1BAZA 3VW4A 1IRQA 3H87C 2CPGA 2K5JA 2KELA 4HV0A 1B01A 2BNWA 1X93A 2CADA 2K1OA 1U9PA 3OD2A 3LGHA 1B28A 1BDTA 3VEAA 2BSQE 1MYKA 2CA9A 2JXGA 3QOQA 2WVCA 2BNZA 1QTGA 2BJ7A
chains in the Genus database with same CATH superfamily
2GPEA 2JBVA 1ARQA 4LQ3A 1SH2A 2BJ1A 2HZAA 4QPXA 1Q5VA 2AY0A 3FT7A 4MJWA 2RBFA 2ADLA 3UPFA 4LRVA 4AAIA 3FMTA 1ARRA 1P94A 3QIDA 3SFGA 2K5JA 1X93A 3OD2A 1U9PA 3NAIA 2CA9A 3H5XA 2BNZA 4NRUA 1NLAA 1PARA 3NAHA 2JXIA 3VEBA 2HZVA 1OHNA 4ME7E 2CKWA 2WK4A 2BJ9A 1BAZA 3H87C 2CPGA 2KELA 2BNWA 2CADA 3LGHA 3VEAA 1MYKA 4NRTA 3QOQA 1Q16A 3IR7A 2K29A 2BJ3A 2KOEA 2B43A 2UUWA 1SIWA 1OG7A 4D8JA 2A2BA 2H3AA 4FXEA 3GXQA 2CAJA 1IRQA 4HV0A 3G5OA 2KKEA 1B28A 1BDTA 3NNEA 2BSQE 3SFUA 2JXGA 3BSNA 1QTGA 2AN7A 2WVEA 1BDVA 1MNTA 2BA3A 1MYLA 3LJPA 3NO7A 2K6LA 2WVDA 1SH0A 2JXHA 2H1OE 1EA4A 2BJ8A 4O4RA 2UUTA 2WVBA 3H5YA 2WVFA 3BSOA 4LQ9A 2K9IA 2CAXA 3VW4A 1B01A 3UQSA 2Q2KA 2K1OA 1SH3A 3UR0A 2WVCA 2BJ7A
chains in the Genus database with same CATH topology
2GPEA 2WVEA 1BDVA 1MNTA 1NLAA 2BA3A 1MYLA 2K29A 1PARA 2BJ3A 2K6LA 2WVDA 1ARQA 2BJ1A 2HZAA 2JXHA 2H1OE 1Q5VA 2AY0A 3FT7A 2RBFA 1EA4A 2JXIA 3VEBA 2HZVA 2BJ8A 4D8JA 2WVBA 4FXEA 2WVFA 3FMTA 3GXQA 4ME7E 1ARRA 1P94A 2CAJA 2BJ9A 2K9IA 2CAXA 1BAZA 3VW4A 1IRQA 3H87C 2CPGA 2K5JA 2KELA 4HV0A 1B01A 2BNWA 1X93A 2CADA 2K1OA 1U9PA 3OD2A 3LGHA 1B28A 1BDTA 3VEAA 2BSQE 1MYKA 2CA9A 2JXGA 3QOQA 2WVCA 2BNZA 1QTGA 2BJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GPE A;  2WVE A;  1BDV A;  1MNT A;  1NLA A;  2BA3 A;  1MYL A;  2K29 A;  1PAR A;  2BJ3 A;  2K6L A;  2WVD A;  1ARQ A;  2BJ1 A;  2HZA A;  2JXH A;  2H1O E;  1Q5V A;  2AY0 A;  3FT7 A;  2RBF A;  1EA4 A;  2JXI A;  3VEB A;  2HZV A;  2BJ8 A;  4D8J A;  2WVB A;  4FXE A;  2WVF A;  3FMT A;  3GXQ A;  4ME7 E;  1ARR A;  1P94 A;  2CAJ A;  2BJ9 A;  2K9I A;  2CAX A;  1BAZ A;  3VW4 A;  1IRQ A;  3H87 C;  2CPG A;  2K5J A;  2KEL A;  4HV0 A;  1B01 A;  2BNW A;  1X93 A;  2CAD A;  2K1O A;  1U9P A;  3OD2 A;  3LGH A;  1B28 A;  1BDT A;  3VEA A;  2BSQ E;  1MYK A;  2CA9 A;  2JXG A;  3QOQ A;  2WVC A;  2BNZ A;  1QTG A;  2BJ7 A; 
#chains in the Genus database with same CATH topology
 2GPE A;  2JBV A;  1ARQ A;  4LQ3 A;  1SH2 A;  2BJ1 A;  2HZA A;  4QPX A;  1Q5V A;  2AY0 A;  3FT7 A;  4MJW A;  2RBF A;  2ADL A;  3UPF A;  4LRV A;  4AAI A;  3FMT A;  1ARR A;  1P94 A;  3QID A;  3SFG A;  2K5J A;  1X93 A;  3OD2 A;  1U9P A;  3NAI A;  2CA9 A;  3H5X A;  2BNZ A;  4NRU A;  1NLA A;  1PAR A;  3NAH A;  2JXI A;  3VEB A;  2HZV A;  1OHN A;  4ME7 E;  2CKW A;  2WK4 A;  2BJ9 A;  1BAZ A;  3H87 C;  2CPG A;  2KEL A;  2BNW A;  2CAD A;  3LGH A;  3VEA A;  1MYK A;  4NRT A;  3QOQ A;  1Q16 A;  3IR7 A;  2K29 A;  2BJ3 A;  2KOE A;  2B43 A;  2UUW A;  1SIW A;  1OG7 A;  4D8J A;  2A2B A;  2H3A A;  4FXE A;  3GXQ A;  2CAJ A;  1IRQ A;  4HV0 A;  3G5O A;  2KKE A;  1B28 A;  1BDT A;  3NNE A;  2BSQ E;  3SFU A;  2JXG A;  3BSN A;  1QTG A;  2AN7 A;  2WVE A;  1BDV A;  1MNT A;  2BA3 A;  1MYL A;  3LJP A;  3NO7 A;  2K6L A;  2WVD A;  1SH0 A;  2JXH A;  2H1O E;  1EA4 A;  2BJ8 A;  4O4R A;  2UUT A;  2WVB A;  3H5Y A;  2WVF A;  3BSO A;  4LQ9 A;  2K9I A;  2CAX A;  3VW4 A;  1B01 A;  3UQS A;  2Q2K A;  2K1O A;  1SH3 A;  3UR0 A;  2WVC A;  2BJ7 A; 
#chains in the Genus database with same CATH homology
 2GPE A;  2WVE A;  1BDV A;  1MNT A;  1NLA A;  2BA3 A;  1MYL A;  2K29 A;  1PAR A;  2BJ3 A;  2K6L A;  2WVD A;  1ARQ A;  2BJ1 A;  2HZA A;  2JXH A;  2H1O E;  1Q5V A;  2AY0 A;  3FT7 A;  2RBF A;  1EA4 A;  2JXI A;  3VEB A;  2HZV A;  2BJ8 A;  4D8J A;  2WVB A;  4FXE A;  2WVF A;  3FMT A;  3GXQ A;  4ME7 E;  1ARR A;  1P94 A;  2CAJ A;  2BJ9 A;  2K9I A;  2CAX A;  1BAZ A;  3VW4 A;  1IRQ A;  3H87 C;  2CPG A;  2K5J A;  2KEL A;  4HV0 A;  1B01 A;  2BNW A;  1X93 A;  2CAD A;  2K1O A;  1U9P A;  3OD2 A;  3LGH A;  1B28 A;  1BDT A;  3VEA A;  2BSQ E;  1MYK A;  2CA9 A;  2JXG A;  3QOQ A;  2WVC A;  2BNZ A;  1QTG A;  2BJ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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