2K5J | Genus

Total Genus 12

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	80
structure length	80
Chain Sequence	MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Shigella flexneri 5 str. 8401
publication title	Solution structure of protein yiiF from Shigella flexneri serotype 5b (strain 8401) . Northeast Structural Genomics Consortium target sft1 rcsb
molecule keywords	uncharacterized protein yiiF
total genus	12
structure length	80
sequence length	80
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-06-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	2k5jA01

2K6LA 2BNWA 2WVCA 2CADA 2BJ7A 3H87C 1B01A 1NLAA 2BJ1A 1BDTA 3GXQA 2GPEA 3OD2A 2BA3A 2CA9A 2K1OA 2BJ3A 3VEBA 4D8JA 1EA4A 1QTGA 2RBFA 2JXGA 2WVDA 1MYLA 2K29A 1BDVA 2CAXA 2WVBA 2WVFA 2H1OE 2JXIA 3QOQA 1U9PA 1Q5VA 2CPGA 3FT7A 1PARA 1ARQA 2AY0A 2BNZA 2KELA 2HZVA 1IRQA 3VEAA 2HZAA 1X93A 1MNTA 2CAJA 1P94A 4FXEA 4HV0A 1ARRA 3FMTA 2BSQE 2JXHA 1B28A 2BJ8A 2WVEA 3VW4A 2K9IA 2K5JA 4ME7E 1BAZA 3LGHA 1MYKA 2BJ9A
chains in the Genus database with same CATH superfamily

4NRTA 3H87C 1NLAA 3H5XA 3UR0A 2BJ1A 3OD2A 2BA3A 2CA9A 2UUWA 2JXGA 2WVDA 2WVFA 3NO7A 3BSOA 1PARA 3IR7A 1OG7A 2BNZA 1Q16A 2HZAA 2CAJA 2UUTA 3FMTA 1B28A 2WVEA 1SH0A 2K9IA 1BAZA 3LGHA 2K5JA 2BJ9A 4QPXA 4LQ3A 2BJ7A 3UPFA 2BJ3A 2JXIA 1MYLA 2K29A 1U9PA 3SFGA 2AN7A 4LRVA 4NRUA 1ARQA 2CPGA 3FT7A 2AY0A 3VEAA 2KKEA 1X93A 2KOEA 4HV0A 1P94A 4LQ9A 1ARRA 2BSQE 2JXHA 2Q2KA 3UQSA 1SH3A 2H1OE 3BSNA 2K6LA 2A2BA 2WVCA 2CADA 3GXQA 2B43A 3VEBA 4D8JA 1EA4A 1Q5VA 3SFUA 4AAIA 4MJWA 1IRQA 1MNTA 2CKWA 2JBVA 1OHNA 3H5YA 3LJPA 1SH2A 4ME7E 2BNWA 1B01A 1BDTA 2GPEA 1SIWA 3QIDA 2K1OA 3G5OA 1QTGA 2RBFA 2H3AA 2WK4A 1BDVA 2CAXA 2WVBA 3QOQA 2KELA 3NAHA 2HZVA 3NNEA 2ADLA 4FXEA 3NAIA 4O4RA 2BJ8A 3VW4A 1MYKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2K6L A;  2BNW A;  2WVC A;  2CAD A;  2BJ7 A;  3H87 C;  1B01 A;  1NLA A;  2BJ1 A;  1BDT A;  3GXQ A;  2GPE A;  3OD2 A;  2BA3 A;  2CA9 A;  2K1O A;  2BJ3 A;  3VEB A;  4D8J A;  1EA4 A;  1QTG A;  2RBF A;  2JXG A;  2WVD A;  1MYL A;  2K29 A;  1BDV A;  2CAX A;  2WVB A;  2WVF A;  2H1O E;  2JXI A;  3QOQ A;  1U9P A;  1Q5V A;  2CPG A;  3FT7 A;  1PAR A;  1ARQ A;  2AY0 A;  2BNZ A;  2KEL A;  2HZV A;  1IRQ A;  3VEA A;  2HZA A;  1X93 A;  1MNT A;  2CAJ A;  1P94 A;  4FXE A;  4HV0 A;  1ARR A;  3FMT A;  2BSQ E;  2JXH A;  1B28 A;  2BJ8 A;  2WVE A;  3VW4 A;  2K9I A;  2K5J A;  4ME7 E;  1BAZ A;  3LGH A;  1MYK A;  2BJ9 A; 
#chains in the Genus database with same CATH topology
 4NRT A;  3H87 C;  1NLA A;  3H5X A;  3UR0 A;  2BJ1 A;  3OD2 A;  2BA3 A;  2CA9 A;  2UUW A;  2JXG A;  2WVD A;  2WVF A;  3NO7 A;  3BSO A;  1PAR A;  3IR7 A;  1OG7 A;  2BNZ A;  1Q16 A;  2HZA A;  2CAJ A;  2UUT A;  3FMT A;  1B28 A;  2WVE A;  1SH0 A;  2K9I A;  1BAZ A;  3LGH A;  2K5J A;  2BJ9 A;  4QPX A;  4LQ3 A;  2BJ7 A;  3UPF A;  2BJ3 A;  2JXI A;  1MYL A;  2K29 A;  1U9P A;  3SFG A;  2AN7 A;  4LRV A;  4NRU A;  1ARQ A;  2CPG A;  3FT7 A;  2AY0 A;  3VEA A;  2KKE A;  1X93 A;  2KOE A;  4HV0 A;  1P94 A;  4LQ9 A;  1ARR A;  2BSQ E;  2JXH A;  2Q2K A;  3UQS A;  1SH3 A;  2H1O E;  3BSN A;  2K6L A;  2A2B A;  2WVC A;  2CAD A;  3GXQ A;  2B43 A;  3VEB A;  4D8J A;  1EA4 A;  1Q5V A;  3SFU A;  4AAI A;  4MJW A;  1IRQ A;  1MNT A;  2CKW A;  2JBV A;  1OHN A;  3H5Y A;  3LJP A;  1SH2 A;  4ME7 E;  2BNW A;  1B01 A;  1BDT A;  2GPE A;  1SIW A;  3QID A;  2K1O A;  3G5O A;  1QTG A;  2RBF A;  2H3A A;  2WK4 A;  1BDV A;  2CAX A;  2WVB A;  3QOQ A;  2KEL A;  3NAH A;  2HZV A;  3NNE A;  2ADL A;  4FXE A;  3NAI A;  4O4R A;  2BJ8 A;  3VW4 A;  1MYK A; 
#chains in the Genus database with same CATH homology
 2K6L A;  2BNW A;  2WVC A;  2CAD A;  2BJ7 A;  3H87 C;  1B01 A;  1NLA A;  2BJ1 A;  1BDT A;  3GXQ A;  2GPE A;  3OD2 A;  2BA3 A;  2CA9 A;  2K1O A;  2BJ3 A;  3VEB A;  4D8J A;  1EA4 A;  1QTG A;  2RBF A;  2JXG A;  2WVD A;  1MYL A;  2K29 A;  1BDV A;  2CAX A;  2WVB A;  2WVF A;  2H1O E;  2JXI A;  3QOQ A;  1U9P A;  1Q5V A;  2CPG A;  3FT7 A;  1PAR A;  1ARQ A;  2AY0 A;  2BNZ A;  2KEL A;  2HZV A;  1IRQ A;  3VEA A;  2HZA A;  1X93 A;  1MNT A;  2CAJ A;  1P94 A;  4FXE A;  4HV0 A;  1ARR A;  3FMT A;  2BSQ E;  2JXH A;  1B28 A;  2BJ8 A;  2WVE A;  3VW4 A;  2K9I A;  2K5J A;  4ME7 E;  1BAZ A;  3LGH A;  1MYK A;  2BJ9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2K5JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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