2K9IA

Nmr structure of plasmid copy control protein orf56 from sulfolobus islandicus
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
55
structure length
55
Chain Sequence
GRPYKLLNGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDKQKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (5-8)EMPTYAH2 (36-51)TIV3 (52-55)AH1 (19-32)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Sulfolobus islandicus
publication title Structure-Based Stability Analysis of an Extremely Stable Dimeric DNA Binding Protein from Sulfolobus islandicus
pubmed doi rcsb
molecule keywords Uncharacterized protein ORF56
total genus 15
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-10-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k9iA00
1EA4A 1B28A 2CPGA 1MYKA 2BJ3A 2CADA 1ARRA 3H87C 3GXQA 1X93A 2HZAA 1B01A 1BDVA 2BJ1A 1MNTA 2H1OE 2K5JA 3QOQA 2BJ9A 2WVEA 4ME7E 4HV0A 2BJ8A 2GPEA 2JXGA 1ARQA 2CAXA 2BNZA 2BSQE 1IRQA 2AY0A 1Q5VA 3VW4A 1NLAA 1BDTA 2CAJA 2BA3A 3VEBA 1QTGA 2JXIA 1P94A 3FMTA 2K29A 2JXHA 2K6LA 2RBFA 2BJ7A 2BNWA 1U9PA 3FT7A 2CA9A 2K1OA 2WVDA 2WVBA 2WVFA 2KELA 2WVCA 3VEAA 3LGHA 4D8JA 1PARA 1BAZA 2HZVA 1MYLA 2K9IA 3OD2A 4FXEA
chains in the Genus database with same CATH superfamily
1B28A 3GXQA 2A2BA 1ARRA 2KOEA 1MNTA 1OG7A 3QOQA 2WVEA 2GPEA 2BNZA 2ADLA 4NRUA 3VEBA 1QTGA 4QPXA 2K1OA 2WVDA 2CKWA 2WK4A 3LGHA 1SH3A 4D8JA 2KKEA 2CPGA 2B43A 3NAHA 1X93A 2HZAA 1B01A 3UPFA 4HV0A 2BSQE 1IRQA 2AY0A 3IR7A 1NLAA 2CAJA 2JXIA 2BJ7A 3FT7A 2WVBA 1SIWA 1BAZA 2HZVA 2K9IA 2UUWA 3OD2A 1EA4A 1MYKA 2CADA 3UQSA 1BDVA 2H1OE 2AN7A 4LQ9A 3BSNA 3LJPA 4ME7E 2JXGA 2CAXA 3UR0A 2JBVA 3VW4A 4NRTA 2K29A 1OHNA 2RBFA 2BNWA 3SFUA 3NNEA 2WVFA 2KELA 2WVCA 1PARA 1MYLA 2Q2KA 1SH0A 1ARQA 2BJ3A 3H5XA 2UUTA 3H87C 3H5YA 3BSOA 3G5OA 2BJ1A 3SFGA 4LQ3A 2H3AA 2K5JA 2BJ9A 2BJ8A 4AAIA 3NAIA 1Q16A 1Q5VA 1BDTA 2BA3A 1SH2A 3NO7A 1P94A 3FMTA 4O4RA 2JXHA 2K6LA 1U9PA 2CA9A 4LRVA 3VEAA 4MJWA 3QIDA 4FXEA
chains in the Genus database with same CATH topology
1EA4A 1B28A 2CPGA 1MYKA 2BJ3A 2CADA 1ARRA 3H87C 3GXQA 1X93A 2HZAA 1B01A 1BDVA 2BJ1A 1MNTA 2H1OE 2K5JA 3QOQA 2BJ9A 2WVEA 4ME7E 4HV0A 2BJ8A 2GPEA 2JXGA 1ARQA 2CAXA 2BNZA 2BSQE 1IRQA 2AY0A 1Q5VA 3VW4A 1NLAA 1BDTA 2CAJA 2BA3A 3VEBA 1QTGA 2JXIA 1P94A 3FMTA 2K29A 2JXHA 2K6LA 2RBFA 2BJ7A 2BNWA 1U9PA 3FT7A 2CA9A 2K1OA 2WVDA 2WVBA 2WVFA 2KELA 2WVCA 3VEAA 3LGHA 4D8JA 1PARA 1BAZA 2HZVA 1MYLA 2K9IA 3OD2A 4FXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EA4 A;  1B28 A;  2CPG A;  1MYK A;  2BJ3 A;  2CAD A;  1ARR A;  3H87 C;  3GXQ A;  1X93 A;  2HZA A;  1B01 A;  1BDV A;  2BJ1 A;  1MNT A;  2H1O E;  2K5J A;  3QOQ A;  2BJ9 A;  2WVE A;  4ME7 E;  4HV0 A;  2BJ8 A;  2GPE A;  2JXG A;  1ARQ A;  2CAX A;  2BNZ A;  2BSQ E;  1IRQ A;  2AY0 A;  1Q5V A;  3VW4 A;  1NLA A;  1BDT A;  2CAJ A;  2BA3 A;  3VEB A;  1QTG A;  2JXI A;  1P94 A;  3FMT A;  2K29 A;  2JXH A;  2K6L A;  2RBF A;  2BJ7 A;  2BNW A;  1U9P A;  3FT7 A;  2CA9 A;  2K1O A;  2WVD A;  2WVB A;  2WVF A;  2KEL A;  2WVC A;  3VEA A;  3LGH A;  4D8J A;  1PAR A;  1BAZ A;  2HZV A;  1MYL A;  2K9I A;  3OD2 A;  4FXE A; 
#chains in the Genus database with same CATH topology
 1B28 A;  3GXQ A;  2A2B A;  1ARR A;  2KOE A;  1MNT A;  1OG7 A;  3QOQ A;  2WVE A;  2GPE A;  2BNZ A;  2ADL A;  4NRU A;  3VEB A;  1QTG A;  4QPX A;  2K1O A;  2WVD A;  2CKW A;  2WK4 A;  3LGH A;  1SH3 A;  4D8J A;  2KKE A;  2CPG A;  2B43 A;  3NAH A;  1X93 A;  2HZA A;  1B01 A;  3UPF A;  4HV0 A;  2BSQ E;  1IRQ A;  2AY0 A;  3IR7 A;  1NLA A;  2CAJ A;  2JXI A;  2BJ7 A;  3FT7 A;  2WVB A;  1SIW A;  1BAZ A;  2HZV A;  2K9I A;  2UUW A;  3OD2 A;  1EA4 A;  1MYK A;  2CAD A;  3UQS A;  1BDV A;  2H1O E;  2AN7 A;  4LQ9 A;  3BSN A;  3LJP A;  4ME7 E;  2JXG A;  2CAX A;  3UR0 A;  2JBV A;  3VW4 A;  4NRT A;  2K29 A;  1OHN A;  2RBF A;  2BNW A;  3SFU A;  3NNE A;  2WVF A;  2KEL A;  2WVC A;  1PAR A;  1MYL A;  2Q2K A;  1SH0 A;  1ARQ A;  2BJ3 A;  3H5X A;  2UUT A;  3H87 C;  3H5Y A;  3BSO A;  3G5O A;  2BJ1 A;  3SFG A;  4LQ3 A;  2H3A A;  2K5J A;  2BJ9 A;  2BJ8 A;  4AAI A;  3NAI A;  1Q16 A;  1Q5V A;  1BDT A;  2BA3 A;  1SH2 A;  3NO7 A;  1P94 A;  3FMT A;  4O4R A;  2JXH A;  2K6L A;  1U9P A;  2CA9 A;  4LRV A;  3VEA A;  4MJW A;  3QID A;  4FXE A; 
#chains in the Genus database with same CATH homology
 1EA4 A;  1B28 A;  2CPG A;  1MYK A;  2BJ3 A;  2CAD A;  1ARR A;  3H87 C;  3GXQ A;  1X93 A;  2HZA A;  1B01 A;  1BDV A;  2BJ1 A;  1MNT A;  2H1O E;  2K5J A;  3QOQ A;  2BJ9 A;  2WVE A;  4ME7 E;  4HV0 A;  2BJ8 A;  2GPE A;  2JXG A;  1ARQ A;  2CAX A;  2BNZ A;  2BSQ E;  1IRQ A;  2AY0 A;  1Q5V A;  3VW4 A;  1NLA A;  1BDT A;  2CAJ A;  2BA3 A;  3VEB A;  1QTG A;  2JXI A;  1P94 A;  3FMT A;  2K29 A;  2JXH A;  2K6L A;  2RBF A;  2BJ7 A;  2BNW A;  1U9P A;  3FT7 A;  2CA9 A;  2K1O A;  2WVD A;  2WVB A;  2WVF A;  2KEL A;  2WVC A;  3VEA A;  3LGH A;  4D8J A;  1PAR A;  1BAZ A;  2HZV A;  1MYL A;  2K9I A;  3OD2 A;  4FXE A; 
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similar chains in the pdb database (?% sequence similarity)

 
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