2KKE | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	53
structure length	53
Chain Sequence	MVGRRPGGGLKDTKPVVVRLYPDEIEALKSRVPANTSMSAYIRRIILNHLEDE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Methanothermobacter thermautotrophicus str. delta h
publication title	NMR Solution Structure of a putative uncharacterized protein from Methanobacterium thermoautotrophicum, Northeast Structural Genomics Consortium Target:TR5 rcsb
molecule keywords	Uncharacterized protein
total genus	9
structure length	53
sequence length	53
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-06-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	2kkeA00

2KKEA
chains in the Genus database with same CATH superfamily

2BJ8A 4ME7E 4AAIA 2CA9A 2UUWA 2BSQE 2JXIA 1MYKA 1SIWA 3UR0A 2K29A 2CAXA 3GXQA 4QPXA 1SH2A 1BAZA 3QOQA 2AN7A 1B01A 3FMTA 2JBVA 3LJPA 4LQ3A 2RBFA 2BNZA 1EA4A 2A2BA 1MYLA 2CADA 1IRQA 4LRVA 1NLAA 1PARA 1ARQA 3VW4A 2H1OE 4NRTA 2BA3A 2HZVA 3LGHA 2K1OA 2WVBA 1ARRA 2JXHA 2KOEA 4D8JA 2BJ7A 3QIDA 3NNEA 2JXGA 3VEAA 2AY0A 1BDVA 1U9PA 3G5OA 1Q5VA 4LQ9A 2UUTA 1B28A 3H87C 4O4RA 2CKWA 3H5YA 3H5XA 3SFGA 2WVFA 2KELA 4HV0A 3NAIA 2WVCA 1SH0A 1QTGA 2BJ3A 1MNTA 2K6LA 3FT7A 3OD2A 3VEBA 4MJWA 2B43A 3NAHA 2BJ9A 2K9IA 1SH3A 2GPEA 3BSNA 2BJ1A 3IR7A 1Q16A 2HZAA 1X93A 1P94A 2Q2KA 3BSOA 2WK4A 3UPFA 2WVDA 2KKEA 2ADLA 2BNWA 2CAJA 2CPGA 3SFUA 2H3AA 2K5JA 1OHNA 4NRUA 2WVEA 3NO7A 1OG7A 1BDTA 3UQSA 4FXEA
chains in the Genus database with same CATH topology

4O4RA 3IR7A 1Q16A 4AAIA 2UUWA 2CKWA 3H5YA 3H5XA 3SFGA 2Q2KA 1SIWA 3NAIA 3BSOA 4NRTA 2WK4A 3UR0A 3UPFA 1SH0A 4QPXA 2KKEA 2ADLA 1SH2A 2KOEA 4MJWA 3SFUA 2AN7A 2H3AA 2B43A 1OHNA 3NAHA 3QIDA 3NNEA 4NRUA 2JBVA 3LJPA 3NO7A 4LQ3A 1OG7A 1SH3A 2A2BA 3G5OA 3BSNA 4LQ9A 3UQSA 2UUTA 4LRVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KKE A; 
#chains in the Genus database with same CATH topology
 2BJ8 A;  4ME7 E;  4AAI A;  2CA9 A;  2UUW A;  2BSQ E;  2JXI A;  1MYK A;  1SIW A;  3UR0 A;  2K29 A;  2CAX A;  3GXQ A;  4QPX A;  1SH2 A;  1BAZ A;  3QOQ A;  2AN7 A;  1B01 A;  3FMT A;  2JBV A;  3LJP A;  4LQ3 A;  2RBF A;  2BNZ A;  1EA4 A;  2A2B A;  1MYL A;  2CAD A;  1IRQ A;  4LRV A;  1NLA A;  1PAR A;  1ARQ A;  3VW4 A;  2H1O E;  4NRT A;  2BA3 A;  2HZV A;  3LGH A;  2K1O A;  2WVB A;  1ARR A;  2JXH A;  2KOE A;  4D8J A;  2BJ7 A;  3QID A;  3NNE A;  2JXG A;  3VEA A;  2AY0 A;  1BDV A;  1U9P A;  3G5O A;  1Q5V A;  4LQ9 A;  2UUT A;  1B28 A;  3H87 C;  4O4R A;  2CKW A;  3H5Y A;  3H5X A;  3SFG A;  2WVF A;  2KEL A;  4HV0 A;  3NAI A;  2WVC A;  1SH0 A;  1QTG A;  2BJ3 A;  1MNT A;  2K6L A;  3FT7 A;  3OD2 A;  3VEB A;  4MJW A;  2B43 A;  3NAH A;  2BJ9 A;  2K9I A;  1SH3 A;  2GPE A;  3BSN A;  2BJ1 A;  3IR7 A;  1Q16 A;  2HZA A;  1X93 A;  1P94 A;  2Q2K A;  3BSO A;  2WK4 A;  3UPF A;  2WVD A;  2KKE A;  2ADL A;  2BNW A;  2CAJ A;  2CPG A;  3SFU A;  2H3A A;  2K5J A;  1OHN A;  4NRU A;  2WVE A;  3NO7 A;  1OG7 A;  1BDT A;  3UQS A;  4FXE A; 
#chains in the Genus database with same CATH homology
 4O4R A;  3IR7 A;  1Q16 A;  4AAI A;  2UUW A;  2CKW A;  3H5Y A;  3H5X A;  3SFG A;  2Q2K A;  1SIW A;  3NAI A;  3BSO A;  4NRT A;  2WK4 A;  3UR0 A;  3UPF A;  1SH0 A;  4QPX A;  2KKE A;  2ADL A;  1SH2 A;  2KOE A;  4MJW A;  3SFU A;  2AN7 A;  2H3A A;  2B43 A;  1OHN A;  3NAH A;  3QID A;  3NNE A;  4NRU A;  2JBV A;  3LJP A;  3NO7 A;  4LQ3 A;  1OG7 A;  1SH3 A;  2A2B A;  3G5O A;  3BSN A;  4LQ9 A;  3UQS A;  2UUT A;  4LRV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2KKEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN