2Q2K | Genus

Total Genus 8

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	45
structure length	45
Chain Sequence	KETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/dna
source organism	Staphylococcus aureus
publication title	Segrosome structure revealed by a complex of ParR with centromere DNA. pubmed doi rcsb
molecule keywords	DNA (5'-D(APGPTPAPTPAP(5IU)PAPCP(5IU)PAPGPTPAP
total genus	8
structure length	45
sequence length	45
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-05-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.90	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	2q2kA00

2Q2KA
chains in the Genus database with same CATH superfamily

4D8JA 2K29A 2WK4A 2WVFA 3H5XA 2CAJA 2KOEA 2WVEA 2UUTA 2JXGA 1ARRA 2CAXA 2Q2KA 2HZVA 4LQ3A 2H1OE 2K6LA 2BJ7A 3VW4A 2WVBA 4ME7E 4MJWA 2BJ8A 3NNEA 2CADA 4LQ9A 3BSNA 2KELA 2AY0A 2CPGA 1SIWA 1MYKA 2ADLA 2KKEA 2JXHA 1PARA 2CKWA 3BSOA 2RBFA 3G5OA 2BA3A 1BDVA 3LJPA 3IR7A 2UUWA 3NAHA 2WVDA 1B28A 2CA9A 1BDTA 2BNWA 3UPFA 1SH0A 1B01A 3NO7A 1X93A 3FT7A 3NAIA 1Q5VA 2K9IA 3LGHA 1EA4A 3GXQA 4NRUA 1QTGA 1MYLA 3VEBA 1OHNA 2BJ1A 4QPXA 4O4RA 1P94A 3QOQA 1MNTA 1ARQA 2B43A 1U9PA 2K5JA 2GPEA 3FMTA 2A2BA 1SH3A 3SFUA 1NLAA 1IRQA 3H5YA 2BSQE 4FXEA 1OG7A 3H87C 2BJ9A 1Q16A 3UQSA 2K1OA 2WVCA 4NRTA 2JXIA 1SH2A 2HZAA 2AN7A 3UR0A 4AAIA 3VEAA 1BAZA 4HV0A 4LRVA 3QIDA 2H3AA 2BJ3A 2JBVA 3SFGA 3OD2A 2BNZA
chains in the Genus database with same CATH topology

2WK4A 1OG7A 3H5XA 1SIWA 2ADLA 4NRUA 2KKEA 3H5YA 2KOEA 2UUTA 2CKWA 3BSOA 1OHNA 1Q16A 3G5OA 3UQSA 2Q2KA 4NRTA 3LJPA 4QPXA 4LQ3A 3IR7A 2UUWA 1SH2A 2AN7A 3UR0A 4AAIA 4O4RA 3NAHA 2B43A 4LRVA 3QIDA 3UPFA 1SH0A 4MJWA 3NNEA 2H3AA 3NO7A 4LQ9A 2A2BA 1SH3A 3SFUA 3BSNA 2JBVA 3SFGA 3NAIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2Q2K A; 
#chains in the Genus database with same CATH topology
 4D8J A;  2K29 A;  2WK4 A;  2WVF A;  3H5X A;  2CAJ A;  2KOE A;  2WVE A;  2UUT A;  2JXG A;  1ARR A;  2CAX A;  2Q2K A;  2HZV A;  4LQ3 A;  2H1O E;  2K6L A;  2BJ7 A;  3VW4 A;  2WVB A;  4ME7 E;  4MJW A;  2BJ8 A;  3NNE A;  2CAD A;  4LQ9 A;  3BSN A;  2KEL A;  2AY0 A;  2CPG A;  1SIW A;  1MYK A;  2ADL A;  2KKE A;  2JXH A;  1PAR A;  2CKW A;  3BSO A;  2RBF A;  3G5O A;  2BA3 A;  1BDV A;  3LJP A;  3IR7 A;  2UUW A;  3NAH A;  2WVD A;  1B28 A;  2CA9 A;  1BDT A;  2BNW A;  3UPF A;  1SH0 A;  1B01 A;  3NO7 A;  1X93 A;  3FT7 A;  3NAI A;  1Q5V A;  2K9I A;  3LGH A;  1EA4 A;  3GXQ A;  4NRU A;  1QTG A;  1MYL A;  3VEB A;  1OHN A;  2BJ1 A;  4QPX A;  4O4R A;  1P94 A;  3QOQ A;  1MNT A;  1ARQ A;  2B43 A;  1U9P A;  2K5J A;  2GPE A;  3FMT A;  2A2B A;  1SH3 A;  3SFU A;  1NLA A;  1IRQ A;  3H5Y A;  2BSQ E;  4FXE A;  1OG7 A;  3H87 C;  2BJ9 A;  1Q16 A;  3UQS A;  2K1O A;  2WVC A;  4NRT A;  2JXI A;  1SH2 A;  2HZA A;  2AN7 A;  3UR0 A;  4AAI A;  3VEA A;  1BAZ A;  4HV0 A;  4LRV A;  3QID A;  2H3A A;  2BJ3 A;  2JBV A;  3SFG A;  3OD2 A;  2BNZ A; 
#chains in the Genus database with same CATH homology
 2WK4 A;  1OG7 A;  3H5X A;  1SIW A;  2ADL A;  4NRU A;  2KKE A;  3H5Y A;  2KOE A;  2UUT A;  2CKW A;  3BSO A;  1OHN A;  1Q16 A;  3G5O A;  3UQS A;  2Q2K A;  4NRT A;  3LJP A;  4QPX A;  4LQ3 A;  3IR7 A;  2UUW A;  1SH2 A;  2AN7 A;  3UR0 A;  4AAI A;  4O4R A;  3NAH A;  2B43 A;  4LRV A;  3QID A;  3UPF A;  1SH0 A;  4MJW A;  3NNE A;  2H3A A;  3NO7 A;  4LQ9 A;  2A2B A;  1SH3 A;  3SFU A;  3BSN A;  2JBV A;  3SFG A;  3NAI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Q2KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN