3NO7 | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	60
structure length	60
Chain Sequence	VKMTVTVGEERRARLRTAYTLTHLQEGHRTFSGFIAAALDAEVQRLEQRYNEGRRFENAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein
source organism	Leifsonia xyli subsp. cynodontis
publication title	Crystal structure and centromere binding of the plasmid segregation protein ParB from pCXC100 pubmed doi rcsb
molecule keywords	Putative plasmid related protein
total genus	19
structure length	60
sequence length	60
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-06-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18064	ParB_C	Centromere-binding protein ParB C-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.180	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Arc Repressor Mutant	3no7A00

3NO7A
chains in the Genus database with same CATH superfamily

2K9IA 4MJWA 3UPFA 4QPXA 1ARRA 4LQ3A 2BJ7A 1U9PA 1B28A 2Q2KA 3NAHA 1SIWA 4ME7E 2WVFA 2UUTA 3IR7A 2AN7A 2JXHA 2K6LA 2KOEA 1EA4A 3SFGA 4LQ9A 4NRTA 1Q5VA 2WK4A 2A2BA 2H3AA 3GXQA 2CPGA 2K29A 2BSQE 3G5OA 2UUWA 4LRVA 2WVBA 3QIDA 3UQSA 4FXEA 3LGHA 3H5XA 2WVDA 2CAJA 2BJ3A 1SH0A 2BJ1A 2WVCA 2JBVA 1MYLA 1MYKA 1Q16A 4NRUA 2HZAA 2BNZA 3VW4A 2CADA 1BAZA 3NO7A 2B43A 2BA3A 2AY0A 2BJ8A 2KKEA 2JXIA 1OG7A 1SH3A 1PARA 1P94A 3LJPA 3SFUA 4O4RA 4AAIA 2CAXA 1NLAA 2JXGA 3FMTA 1B01A 3QOQA 3H87C 3VEAA 3OD2A 2RBFA 2K5JA 2CKWA 3UR0A 2KELA 3H5YA 2HZVA 1BDVA 3NAIA 1X93A 1IRQA 3BSOA 3FT7A 3VEBA 1BDTA 1MNTA 2GPEA 3NNEA 2ADLA 1ARQA 2BNWA 1OHNA 1SH2A 2BJ9A 2H1OE 3BSNA 1QTGA 4HV0A 4D8JA 2CA9A 2K1OA 2WVEA
chains in the Genus database with same CATH topology

2CKWA 3UR0A 2KKEA 3H5YA 4MJWA 3UPFA 1OG7A 3NAIA 4QPXA 3G5OA 1SH3A 3BSOA 2UUWA 4LRVA 4LQ3A 3QIDA 3UQSA 3LJPA 3SFUA 3H5XA 2Q2KA 3NNEA 2ADLA 4O4RA 3NAHA 4AAIA 1SIWA 1OHNA 1SH2A 1SH0A 2JBVA 1Q16A 3IR7A 2UUTA 3BSNA 2AN7A 4NRUA 2KOEA 3SFGA 2H3AA 4LQ9A 4NRTA 2WK4A 2A2BA 3NO7A 2B43A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3NO7 A; 
#chains in the Genus database with same CATH topology
 2K9I A;  4MJW A;  3UPF A;  4QPX A;  1ARR A;  4LQ3 A;  2BJ7 A;  1U9P A;  1B28 A;  2Q2K A;  3NAH A;  1SIW A;  4ME7 E;  2WVF A;  2UUT A;  3IR7 A;  2AN7 A;  2JXH A;  2K6L A;  2KOE A;  1EA4 A;  3SFG A;  4LQ9 A;  4NRT A;  1Q5V A;  2WK4 A;  2A2B A;  2H3A A;  3GXQ A;  2CPG A;  2K29 A;  2BSQ E;  3G5O A;  2UUW A;  4LRV A;  2WVB A;  3QID A;  3UQS A;  4FXE A;  3LGH A;  3H5X A;  2WVD A;  2CAJ A;  2BJ3 A;  1SH0 A;  2BJ1 A;  2WVC A;  2JBV A;  1MYL A;  1MYK A;  1Q16 A;  4NRU A;  2HZA A;  2BNZ A;  3VW4 A;  2CAD A;  1BAZ A;  3NO7 A;  2B43 A;  2BA3 A;  2AY0 A;  2BJ8 A;  2KKE A;  2JXI A;  1OG7 A;  1SH3 A;  1PAR A;  1P94 A;  3LJP A;  3SFU A;  4O4R A;  4AAI A;  2CAX A;  1NLA A;  2JXG A;  3FMT A;  1B01 A;  3QOQ A;  3H87 C;  3VEA A;  3OD2 A;  2RBF A;  2K5J A;  2CKW A;  3UR0 A;  2KEL A;  3H5Y A;  2HZV A;  1BDV A;  3NAI A;  1X93 A;  1IRQ A;  3BSO A;  3FT7 A;  3VEB A;  1BDT A;  1MNT A;  2GPE A;  3NNE A;  2ADL A;  1ARQ A;  2BNW A;  1OHN A;  1SH2 A;  2BJ9 A;  2H1O E;  3BSN A;  1QTG A;  4HV0 A;  4D8J A;  2CA9 A;  2K1O A;  2WVE A; 
#chains in the Genus database with same CATH homology
 2CKW A;  3UR0 A;  2KKE A;  3H5Y A;  4MJW A;  3UPF A;  1OG7 A;  3NAI A;  4QPX A;  3G5O A;  1SH3 A;  3BSO A;  2UUW A;  4LRV A;  4LQ3 A;  3QID A;  3UQS A;  3LJP A;  3SFU A;  3H5X A;  2Q2K A;  3NNE A;  2ADL A;  4O4R A;  3NAH A;  4AAI A;  1SIW A;  1OHN A;  1SH2 A;  1SH0 A;  2JBV A;  1Q16 A;  3IR7 A;  2UUT A;  3BSN A;  2AN7 A;  4NRU A;  2KOE A;  3SFG A;  2H3A A;  4LQ9 A;  4NRT A;  2WK4 A;  2A2B A;  3NO7 A;  2B43 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3NO7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations