4HV0A

Structure and function of avtr, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
98
structure length
91
Chain Sequence
MVTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFGIEDRTREGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLKEMIMIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Function of AvtR, a Novel Transcriptional Regulator from a Hyperthermophilic Archaeal Lipothrixvirus.
pubmed doi rcsb
molecule tags Transcription, viral protein
source organism Acidianus filamentous virus 6
molecule keywords AvtR
total genus 23
structure length 91
sequence length 98
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-11-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 4hv0A00
2BJ1A 4HV0A 3FMTA 3VEBA 1B01A 1X93A 2HZAA 2BSQE 2KELA 1MYLA 1P94A 1MYKA 1PARA 3QOQA 2CA9A 2BNWA 2K9IA 1ARRA 2JXGA 2RBFA 2K6LA 1BAZA 3GXQA 2JXHA 2H1OE 2GPEA 2BJ9A 1ARQA 2K5JA 2WVDA 2WVEA 1BDVA 1QTGA 3FT7A 2BNZA 2BA3A 3VW4A 1B28A 2CAJA 3OD2A 2K1OA 2WVCA 2CPGA 2AY0A 2WVBA 2WVFA 2K29A 3H87C 2BJ7A 2CADA 3VEAA 2BJ8A 2BJ3A 4FXEA 1NLAA 1U9PA 4D8JA 4ME7E 2HZVA 3LGHA 1IRQA 1MNTA 1Q5VA 1EA4A 2CAXA 1BDTA 2JXIA
chains in the Genus database with same CATH superfamily
4HV0A 4MJWA 2BSQE 3UQSA 3QOQA 2CA9A 3H5XA 1BAZA 2JXHA 2K5JA 4O4RA 4NRTA 3FT7A 3VW4A 2CAJA 2WVFA 2BJ3A 2BJ8A 2AN7A 4FXEA 3G5OA 3LGHA 4LQ9A 1SH0A 3UPFA 4LRVA 2KKEA 2CAXA 1BDTA 2JXIA 2CKWA 3VEBA 1Q16A 1P94A 3NO7A 1PARA 2RBFA 1ARRA 3NAHA 3SFGA 3LJPA 3SFUA 1SH3A 2WVEA 1BDVA 4NRUA 3OD2A 2CPGA 2AY0A 2WVBA 2CADA 1NLAA 1U9PA 4D8JA 4ME7E 2HZVA 1IRQA 1MNTA 1EA4A 1OHNA 3FMTA 2HZAA 4LQ3A 2B43A 2BNWA 2A2BA 2JXGA 2K6LA 3H5YA 2Q2KA 3GXQA 1SH2A 1ARQA 2WVDA 3IR7A 1QTGA 2BNZA 2K1OA 1SIWA 3H87C 2UUWA 4AAIA 3QIDA 2JBVA 2BJ1A 1B01A 1X93A 2KELA 1OG7A 1MYLA 1MYKA 3BSOA 2K9IA 4QPXA 2ADLA 3NNEA 2GPEA 2BJ9A 2H1OE 3NAIA 1B28A 2BA3A 2H3AA 2KOEA 2WVCA 2K29A 2WK4A 2BJ7A 3VEAA 2UUTA 3UR0A 1Q5VA 3BSNA
chains in the Genus database with same CATH topology
2BJ1A 4HV0A 3FMTA 3VEBA 1B01A 1X93A 2HZAA 2BSQE 2KELA 1MYLA 1P94A 1MYKA 1PARA 3QOQA 2CA9A 2BNWA 2K9IA 1ARRA 2JXGA 2RBFA 2K6LA 1BAZA 3GXQA 2JXHA 2H1OE 2GPEA 2BJ9A 1ARQA 2K5JA 2WVDA 2WVEA 1BDVA 1QTGA 3FT7A 2BNZA 2BA3A 3VW4A 1B28A 2CAJA 3OD2A 2K1OA 2WVCA 2CPGA 2AY0A 2WVBA 2WVFA 2K29A 3H87C 2BJ7A 2CADA 3VEAA 2BJ8A 2BJ3A 4FXEA 1NLAA 1U9PA 4D8JA 4ME7E 2HZVA 3LGHA 1IRQA 1MNTA 1Q5VA 1EA4A 2CAXA 1BDTA 2JXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BJ1 A;  4HV0 A;  3FMT A;  3VEB A;  1B01 A;  1X93 A;  2HZA A;  2BSQ E;  2KEL A;  1MYL A;  1P94 A;  1MYK A;  1PAR A;  3QOQ A;  2CA9 A;  2BNW A;  2K9I A;  1ARR A;  2JXG A;  2RBF A;  2K6L A;  1BAZ A;  3GXQ A;  2JXH A;  2H1O E;  2GPE A;  2BJ9 A;  1ARQ A;  2K5J A;  2WVD A;  2WVE A;  1BDV A;  1QTG A;  3FT7 A;  2BNZ A;  2BA3 A;  3VW4 A;  1B28 A;  2CAJ A;  3OD2 A;  2K1O A;  2WVC A;  2CPG A;  2AY0 A;  2WVB A;  2WVF A;  2K29 A;  3H87 C;  2BJ7 A;  2CAD A;  3VEA A;  2BJ8 A;  2BJ3 A;  4FXE A;  1NLA A;  1U9P A;  4D8J A;  4ME7 E;  2HZV A;  3LGH A;  1IRQ A;  1MNT A;  1Q5V A;  1EA4 A;  2CAX A;  1BDT A;  2JXI A; 
#chains in the Genus database with same CATH topology
 4HV0 A;  4MJW A;  2BSQ E;  3UQS A;  3QOQ A;  2CA9 A;  3H5X A;  1BAZ A;  2JXH A;  2K5J A;  4O4R A;  4NRT A;  3FT7 A;  3VW4 A;  2CAJ A;  2WVF A;  2BJ3 A;  2BJ8 A;  2AN7 A;  4FXE A;  3G5O A;  3LGH A;  4LQ9 A;  1SH0 A;  3UPF A;  4LRV A;  2KKE A;  2CAX A;  1BDT A;  2JXI A;  2CKW A;  3VEB A;  1Q16 A;  1P94 A;  3NO7 A;  1PAR A;  2RBF A;  1ARR A;  3NAH A;  3SFG A;  3LJP A;  3SFU A;  1SH3 A;  2WVE A;  1BDV A;  4NRU A;  3OD2 A;  2CPG A;  2AY0 A;  2WVB A;  2CAD A;  1NLA A;  1U9P A;  4D8J A;  4ME7 E;  2HZV A;  1IRQ A;  1MNT A;  1EA4 A;  1OHN A;  3FMT A;  2HZA A;  4LQ3 A;  2B43 A;  2BNW A;  2A2B A;  2JXG A;  2K6L A;  3H5Y A;  2Q2K A;  3GXQ A;  1SH2 A;  1ARQ A;  2WVD A;  3IR7 A;  1QTG A;  2BNZ A;  2K1O A;  1SIW A;  3H87 C;  2UUW A;  4AAI A;  3QID A;  2JBV A;  2BJ1 A;  1B01 A;  1X93 A;  2KEL A;  1OG7 A;  1MYL A;  1MYK A;  3BSO A;  2K9I A;  4QPX A;  2ADL A;  3NNE A;  2GPE A;  2BJ9 A;  2H1O E;  3NAI A;  1B28 A;  2BA3 A;  2H3A A;  2KOE A;  2WVC A;  2K29 A;  2WK4 A;  2BJ7 A;  3VEA A;  2UUT A;  3UR0 A;  1Q5V A;  3BSN A; 
#chains in the Genus database with same CATH homology
 2BJ1 A;  4HV0 A;  3FMT A;  3VEB A;  1B01 A;  1X93 A;  2HZA A;  2BSQ E;  2KEL A;  1MYL A;  1P94 A;  1MYK A;  1PAR A;  3QOQ A;  2CA9 A;  2BNW A;  2K9I A;  1ARR A;  2JXG A;  2RBF A;  2K6L A;  1BAZ A;  3GXQ A;  2JXH A;  2H1O E;  2GPE A;  2BJ9 A;  1ARQ A;  2K5J A;  2WVD A;  2WVE A;  1BDV A;  1QTG A;  3FT7 A;  2BNZ A;  2BA3 A;  3VW4 A;  1B28 A;  2CAJ A;  3OD2 A;  2K1O A;  2WVC A;  2CPG A;  2AY0 A;  2WVB A;  2WVF A;  2K29 A;  3H87 C;  2BJ7 A;  2CAD A;  3VEA A;  2BJ8 A;  2BJ3 A;  4FXE A;  1NLA A;  1U9P A;  4D8J A;  4ME7 E;  2HZV A;  3LGH A;  1IRQ A;  1MNT A;  1Q5V A;  1EA4 A;  2CAX A;  1BDT A;  2JXI A; 
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