1BWZA

Diaminopimelate epimerase from hemophilus influenzae
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
274
structure length
274
Chain Sequence
MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Isomerase
molecule keywords PROTEIN (DIAMINOPIMELATE EPIMERASE)
total genus 58
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 1998-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA01
3EKMA 3EJXA 3FVEA 4J9WA 1T6KA 4JD7A 1U1WA 4JBDA 2GKEA 4JCIA 2Q9HA 4Q2HA 1BWZA 5H2GA 1W61A 1GQZA 2GKJA 3G7KA 5H2YA 2H9FA 1QYAA 4JUUA 1W62A 5M47A 2PW0A 1YM5A 1XUAA 1QY9A 5IWEA 1S7JA 2PVZA 4J9XA 1U0KA 1U1XA 1XUBA 3EDNA 4IJZA 4K8LA 4IK0A 1TM0A 5HA4A 4Q60A 1SDJA 1U1VA 2Q9JA 4LB0A 4DUNA 4K7XA 2AZPA 4K7GB 2OTNA
chains in the Genus database with same CATH superfamily
4J9WA 3ICJA 2EB0A 1I74A 1BWZA 5H2GA 3G7KA 2H9FA 2PW0A 1YM5A 2KPTA 2LT2A 1K23A 1S7JA 1U1XA 1WPPA 3PTJA 1WPMA 1U1VA 3EKMA 3EJXA 4JD7A 3PW9A 4JBDA 2KW7A 4JCIA 4Q2HA 4JUUA 1W62A 4PY9A 1XUAA 1QY9A 2ENXA 5M47A 4K8LA 4IK0A 5HA4A 2MPBA 1SDJA 2ZXRA 2QB8A 3DEVA 3WQZA 1T6KA 1U1WA 2YMAA 4OA3A 3G98A 2ZXOA 2Q9HA 3W5WA 1W61A 5H2YA 2ZVFA 2IW4A 3IGHX 4RPAA 4LG3A 5IWEA 2PVZA 4J9XA 3EDNA 3PVHA 1K20A 4Q60A 2Q9JA 4K7XA 4K7GB 4GL6A 3FVEA 2GKEA 1GQZA 2GKJA 4LS9A 5ANPA 1QYAA 2ZXPA 2QB6A 1IR6A 2HAWA 2QB7A 1U0KA 1XUBA 4IJZA 1TM0A 4LB0A 4DUNA 2AZPA 2OTNA
chains in the Genus database with same CATH topology
4J9WA 3ICJA 2EB0A 1I74A 1BWZA 5H2GA 3G7KA 2H9FA 2PW0A 1YM5A 2KPTA 2LT2A 1K23A 1S7JA 1U1XA 1WPPA 3PTJA 1WPMA 1U1VA 3EKMA 3EJXA 4JD7A 3PW9A 4JBDA 2KW7A 4JCIA 4Q2HA 4JUUA 1W62A 4PY9A 1XUAA 1QY9A 2ENXA 5M47A 4K8LA 4IK0A 5HA4A 2MPBA 1SDJA 2ZXRA 2QB8A 3DEVA 3WQZA 1T6KA 1U1WA 2YMAA 4OA3A 3G98A 2ZXOA 2Q9HA 3W5WA 1W61A 5H2YA 2ZVFA 2IW4A 3IGHX 4RPAA 4LG3A 5IWEA 2PVZA 4J9XA 3EDNA 3PVHA 1K20A 4Q60A 2Q9JA 4K7XA 4K7GB 4GL6A 3FVEA 2GKEA 1GQZA 2GKJA 4LS9A 5ANPA 1QYAA 2ZXPA 2QB6A 1IR6A 2HAWA 2QB7A 1U0KA 1XUBA 4IJZA 1TM0A 4LB0A 4DUNA 2AZPA 2OTNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EKM A;  3EJX A;  3FVE A;  4J9W A;  1T6K A;  4JD7 A;  1U1W A;  4JBD A;  2GKE A;  4JCI A;  2Q9H A;  4Q2H A;  1BWZ A;  5H2G A;  1W61 A;  1GQZ A;  2GKJ A;  3G7K A;  5H2Y A;  2H9F A;  1QYA A;  4JUU A;  1W62 A;  5M47 A;  2PW0 A;  1YM5 A;  1XUA A;  1QY9 A;  5IWE A;  1S7J A;  2PVZ A;  4J9X A;  1U0K A;  1U1X A;  1XUB A;  3EDN A;  4IJZ A;  4K8L A;  4IK0 A;  1TM0 A;  5HA4 A;  4Q60 A;  1SDJ A;  1U1V A;  2Q9J A;  4LB0 A;  4DUN A;  4K7X A;  2AZP A;  4K7G B;  2OTN A; 
#chains in the Genus database with same CATH topology
 4J9W A;  3ICJ A;  2EB0 A;  1I74 A;  1BWZ A;  5H2G A;  3G7K A;  2H9F A;  2PW0 A;  1YM5 A;  2KPT A;  2LT2 A;  1K23 A;  1S7J A;  1U1X A;  1WPP A;  3PTJ A;  1WPM A;  1U1V A;  3EKM A;  3EJX A;  4JD7 A;  3PW9 A;  4JBD A;  2KW7 A;  4JCI A;  4Q2H A;  4JUU A;  1W62 A;  4PY9 A;  1XUA A;  1QY9 A;  2ENX A;  5M47 A;  4K8L A;  4IK0 A;  5HA4 A;  2MPB A;  1SDJ A;  2ZXR A;  2QB8 A;  3DEV A;  3WQZ A;  1T6K A;  1U1W A;  2YMA A;  4OA3 A;  3G98 A;  2ZXO A;  2Q9H A;  3W5W A;  1W61 A;  5H2Y A;  2ZVF A;  2IW4 A;  3IGH X;  4RPA A;  4LG3 A;  5IWE A;  2PVZ A;  4J9X A;  3EDN A;  3PVH A;  1K20 A;  4Q60 A;  2Q9J A;  4K7X A;  4K7G B;  4GL6 A;  3FVE A;  2GKE A;  1GQZ A;  2GKJ A;  4LS9 A;  5ANP A;  1QYA A;  2ZXP A;  2QB6 A;  1IR6 A;  2HAW A;  2QB7 A;  1U0K A;  1XUB A;  4IJZ A;  1TM0 A;  4LB0 A;  4DUN A;  2AZP A;  2OTN A; 
#chains in the Genus database with same CATH homology
 4J9W A;  3ICJ A;  2EB0 A;  1I74 A;  1BWZ A;  5H2G A;  3G7K A;  2H9F A;  2PW0 A;  1YM5 A;  2KPT A;  2LT2 A;  1K23 A;  1S7J A;  1U1X A;  1WPP A;  3PTJ A;  1WPM A;  1U1V A;  3EKM A;  3EJX A;  4JD7 A;  3PW9 A;  4JBD A;  2KW7 A;  4JCI A;  4Q2H A;  4JUU A;  1W62 A;  4PY9 A;  1XUA A;  1QY9 A;  2ENX A;  5M47 A;  4K8L A;  4IK0 A;  5HA4 A;  2MPB A;  1SDJ A;  2ZXR A;  2QB8 A;  3DEV A;  3WQZ A;  1T6K A;  1U1W A;  2YMA A;  4OA3 A;  3G98 A;  2ZXO A;  2Q9H A;  3W5W A;  1W61 A;  5H2Y A;  2ZVF A;  2IW4 A;  3IGH X;  4RPA A;  4LG3 A;  5IWE A;  2PVZ A;  4J9X A;  3EDN A;  3PVH A;  1K20 A;  4Q60 A;  2Q9J A;  4K7X A;  4K7G B;  4GL6 A;  3FVE A;  2GKE A;  1GQZ A;  2GKJ A;  4LS9 A;  5ANP A;  1QYA A;  2ZXP A;  2QB6 A;  1IR6 A;  2HAW A;  2QB7 A;  1U0K A;  1XUB A;  4IJZ A;  1TM0 A;  4LB0 A;  4DUN A;  2AZP A;  2OTN A; 
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similar chains in the Genus database (?% sequence similarity)
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