1BWZA

Diaminopimelate epimerase from hemophilus influenzae
Total Genus 58
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
274
structure length
274
Chain Sequence
b'MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords PROTEIN (DIAMINOPIMELATE EPIMERASE)
publication title Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Isomerase
total genus 58
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 1998-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA01
3EDNA 2Q9HA 4K7GB 1QY9A 1U1XA 1U1VA 1W61A 5M47A 2H9FA 4JBDA 2Q9JA 1QYAA 4DUNA 4JCIA 4Q2HA 5H2YA 1U1WA 2PW0A 1SDJA 1BWZA 4JD7A 1TM0A 4K8LA 2GKEA 4J9WA 5H2GA 3FVEA 2PVZA 3EJXA 3EKMA 3G7KA 4Q60A 1GQZA 4K7XA 4IK0A 2OTNA 1W62A 2GKJA 1S7JA 4IJZA 1T6KA 4J9XA 4JUUA 5IWEA 1YM5A 1XUAA 5HA4A 2AZPA 4LB0A 1U0KA 1XUBA
chains in the Genus database with same CATH superfamily
3EDNA 2QB8A 1K20A 1U1VA 2IW4A 2QB7A 1K23A 4JCIA 1U1WA 3IGHX 1TM0A 2GKEA 1IR6A 3EKMA 3G7KA 4Q60A 2OTNA 4J9XA 4RPAA 1WPPA 4K7GB 3W5WA 1W61A 4LG3A 2H9FA 2QB6A 2LT2A 2YMAA 1SDJA 4JD7A 4J9WA 2ZVFA 2MPBA 4IK0A 3DEVA 4IJZA 3PTJA 1XUAA 2PW0A 1U0KA 1XUBA 4GL6A 2Q9HA 3G98A 5ANPA 4JBDA 2Q9JA 4DUNA 2EB0A 4Q2HA 5H2YA 1BWZA 3FVEA 2KW7A 2PVZA 3PVHA 4OA3A 2KPTA 4JUUA 4LS9A 2HAWA 5HA4A 3ICJA 1QY9A 1U1XA 3PW9A 5M47A 2ENXA 1QYAA 1WPMA 4PY9A 3WQZA 2ZXOA 4K8LA 5H2GA 2ZXRA 3EJXA 2ZXPA 1GQZA 1I74A 4K7XA 1W62A 2GKJA 1S7JA 1T6KA 5IWEA 1YM5A 2AZPA 4LB0A
chains in the Genus database with same CATH topology
3EDNA 2QB8A 1K20A 1U1VA 2IW4A 2QB7A 1K23A 4JCIA 1U1WA 3IGHX 1TM0A 2GKEA 1IR6A 3EKMA 3G7KA 4Q60A 2OTNA 4J9XA 4RPAA 1WPPA 4K7GB 3W5WA 1W61A 4LG3A 2H9FA 2QB6A 2LT2A 2YMAA 1SDJA 4JD7A 4J9WA 2ZVFA 2MPBA 4IK0A 3DEVA 4IJZA 3PTJA 1XUAA 2PW0A 1U0KA 1XUBA 4GL6A 2Q9HA 3G98A 5ANPA 4JBDA 2Q9JA 4DUNA 2EB0A 4Q2HA 5H2YA 1BWZA 3FVEA 2KW7A 2PVZA 3PVHA 4OA3A 2KPTA 4JUUA 4LS9A 2HAWA 5HA4A 3ICJA 1QY9A 1U1XA 3PW9A 5M47A 2ENXA 1QYAA 1WPMA 4PY9A 3WQZA 2ZXOA 4K8LA 5H2GA 2ZXRA 3EJXA 2ZXPA 1GQZA 1I74A 4K7XA 1W62A 2GKJA 1S7JA 1T6KA 5IWEA 1YM5A 2AZPA 4LB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EDN A;  2Q9H A;  4K7G B;  1QY9 A;  1U1X A;  1U1V A;  1W61 A;  5M47 A;  2H9F A;  4JBD A;  2Q9J A;  1QYA A;  4DUN A;  4JCI A;  4Q2H A;  5H2Y A;  1U1W A;  2PW0 A;  1SDJ A;  1BWZ A;  4JD7 A;  1TM0 A;  4K8L A;  2GKE A;  4J9W A;  5H2G A;  3FVE A;  2PVZ A;  3EJX A;  3EKM A;  3G7K A;  4Q60 A;  1GQZ A;  4K7X A;  4IK0 A;  2OTN A;  1W62 A;  2GKJ A;  1S7J A;  4IJZ A;  1T6K A;  4J9X A;  4JUU A;  5IWE A;  1YM5 A;  1XUA A;  5HA4 A;  2AZP A;  4LB0 A;  1U0K A;  1XUB A; 
#chains in the Genus database with same CATH topology
 3EDN A;  2QB8 A;  1K20 A;  1U1V A;  2IW4 A;  2QB7 A;  1K23 A;  4JCI A;  1U1W A;  3IGH X;  1TM0 A;  2GKE A;  1IR6 A;  3EKM A;  3G7K A;  4Q60 A;  2OTN A;  4J9X A;  4RPA A;  1WPP A;  4K7G B;  3W5W A;  1W61 A;  4LG3 A;  2H9F A;  2QB6 A;  2LT2 A;  2YMA A;  1SDJ A;  4JD7 A;  4J9W A;  2ZVF A;  2MPB A;  4IK0 A;  3DEV A;  4IJZ A;  3PTJ A;  1XUA A;  2PW0 A;  1U0K A;  1XUB A;  4GL6 A;  2Q9H A;  3G98 A;  5ANP A;  4JBD A;  2Q9J A;  4DUN A;  2EB0 A;  4Q2H A;  5H2Y A;  1BWZ A;  3FVE A;  2KW7 A;  2PVZ A;  3PVH A;  4OA3 A;  2KPT A;  4JUU A;  4LS9 A;  2HAW A;  5HA4 A;  3ICJ A;  1QY9 A;  1U1X A;  3PW9 A;  5M47 A;  2ENX A;  1QYA A;  1WPM A;  4PY9 A;  3WQZ A;  2ZXO A;  4K8L A;  5H2G A;  2ZXR A;  3EJX A;  2ZXP A;  1GQZ A;  1I74 A;  4K7X A;  1W62 A;  2GKJ A;  1S7J A;  1T6K A;  5IWE A;  1YM5 A;  2AZP A;  4LB0 A; 
#chains in the Genus database with same CATH homology
 3EDN A;  2QB8 A;  1K20 A;  1U1V A;  2IW4 A;  2QB7 A;  1K23 A;  4JCI A;  1U1W A;  3IGH X;  1TM0 A;  2GKE A;  1IR6 A;  3EKM A;  3G7K A;  4Q60 A;  2OTN A;  4J9X A;  4RPA A;  1WPP A;  4K7G B;  3W5W A;  1W61 A;  4LG3 A;  2H9F A;  2QB6 A;  2LT2 A;  2YMA A;  1SDJ A;  4JD7 A;  4J9W A;  2ZVF A;  2MPB A;  4IK0 A;  3DEV A;  4IJZ A;  3PTJ A;  1XUA A;  2PW0 A;  1U0K A;  1XUB A;  4GL6 A;  2Q9H A;  3G98 A;  5ANP A;  4JBD A;  2Q9J A;  4DUN A;  2EB0 A;  4Q2H A;  5H2Y A;  1BWZ A;  3FVE A;  2KW7 A;  2PVZ A;  3PVH A;  4OA3 A;  2KPT A;  4JUU A;  4LS9 A;  2HAW A;  5HA4 A;  3ICJ A;  1QY9 A;  1U1X A;  3PW9 A;  5M47 A;  2ENX A;  1QYA A;  1WPM A;  4PY9 A;  3WQZ A;  2ZXO A;  4K8L A;  5H2G A;  2ZXR A;  3EJX A;  2ZXP A;  1GQZ A;  1I74 A;  4K7X A;  1W62 A;  2GKJ A;  1S7J A;  1T6K A;  5IWE A;  1YM5 A;  2AZP A;  4LB0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...