1BWZA

Diaminopimelate epimerase from hemophilus influenzae
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
274
structure length
274
Chain Sequence
MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Isomerase
molecule keywords PROTEIN (DIAMINOPIMELATE EPIMERASE)
total genus 58
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 1998-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1bwzA01
2H9FA 4K8LA 5H2YA 5HA4A 3G7KA 4JCIA 4K7GB 4LB0A 4DUNA 2Q9HA 5H2GA 2GKEA 1U1XA 1U1WA 4J9WA 1TM0A 1W61A 3EDNA 1W62A 4IK0A 3FVEA 4J9XA 4Q2HA 1U0KA 1XUAA 1QY9A 2Q9JA 2GKJA 2AZPA 4JUUA 1BWZA 5IWEA 2PVZA 1XUBA 1T6KA 1SDJA 4IJZA 2OTNA 1S7JA 4Q60A 1YM5A 4JD7A 2PW0A 4K7XA 3EKMA 1GQZA 4JBDA 1QYAA 5M47A 1U1VA 3EJXA
chains in the Genus database with same CATH superfamily
2H9FA 5H2YA 3G98A 4JCIA 2IW4A 4LB0A 4DUNA 2GKEA 1U1WA 3FVEA 2HAWA 2QB6A 3IGHX 4JUUA 1BWZA 4LG3A 4LS9A 1T6KA 4IJZA 2OTNA 1S7JA 4JD7A 1QYAA 1U1VA 3EJXA 2ZVFA 3G7KA 1IR6A 4K7GB 5H2GA 1U1XA 2ZXOA 3ICJA 4GL6A 1W62A 2KPTA 3DEVA 2QB7A 4Q2HA 2ENXA 1U0KA 3PVHA 1QY9A 2GKJA 5IWEA 2LT2A 3WQZA 2Q9JA 5HA4A 1K20A 1WPPA 2MPBA 1W61A 1K23A 3W5WA 3PW9A 4J9XA 1WPMA 2AZPA 4RPAA 2PVZA 2QB8A 1YM5A 2PW0A 3EKMA 1GQZA 2YMAA 4K8LA 2Q9HA 2ZXRA 4J9WA 1TM0A 3EDNA 4IK0A 1XUAA 3PTJA 2KW7A 1XUBA 2ZXPA 1SDJA 5ANPA 1I74A 4OA3A 4Q60A 4K7XA 4PY9A 2EB0A 4JBDA 5M47A
chains in the Genus database with same CATH topology
2H9FA 5H2YA 3G98A 4JCIA 2IW4A 4LB0A 4DUNA 2GKEA 1U1WA 3FVEA 2HAWA 2QB6A 3IGHX 4JUUA 1BWZA 4LG3A 4LS9A 1T6KA 4IJZA 2OTNA 1S7JA 4JD7A 1QYAA 1U1VA 3EJXA 2ZVFA 3G7KA 1IR6A 4K7GB 5H2GA 1U1XA 2ZXOA 3ICJA 4GL6A 1W62A 2KPTA 3DEVA 2QB7A 4Q2HA 2ENXA 1U0KA 3PVHA 1QY9A 2GKJA 5IWEA 2LT2A 3WQZA 2Q9JA 5HA4A 1K20A 1WPPA 2MPBA 1W61A 1K23A 3W5WA 3PW9A 4J9XA 1WPMA 2AZPA 4RPAA 2PVZA 2QB8A 1YM5A 2PW0A 3EKMA 1GQZA 2YMAA 4K8LA 2Q9HA 2ZXRA 4J9WA 1TM0A 3EDNA 4IK0A 1XUAA 3PTJA 2KW7A 1XUBA 2ZXPA 1SDJA 5ANPA 1I74A 4OA3A 4Q60A 4K7XA 4PY9A 2EB0A 4JBDA 5M47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H9F A;  4K8L A;  5H2Y A;  5HA4 A;  3G7K A;  4JCI A;  4K7G B;  4LB0 A;  4DUN A;  2Q9H A;  5H2G A;  2GKE A;  1U1X A;  1U1W A;  4J9W A;  1TM0 A;  1W61 A;  3EDN A;  1W62 A;  4IK0 A;  3FVE A;  4J9X A;  4Q2H A;  1U0K A;  1XUA A;  1QY9 A;  2Q9J A;  2GKJ A;  2AZP A;  4JUU A;  1BWZ A;  5IWE A;  2PVZ A;  1XUB A;  1T6K A;  1SDJ A;  4IJZ A;  2OTN A;  1S7J A;  4Q60 A;  1YM5 A;  4JD7 A;  2PW0 A;  4K7X A;  3EKM A;  1GQZ A;  4JBD A;  1QYA A;  5M47 A;  1U1V A;  3EJX A; 
#chains in the Genus database with same CATH topology
 2H9F A;  5H2Y A;  3G98 A;  4JCI A;  2IW4 A;  4LB0 A;  4DUN A;  2GKE A;  1U1W A;  3FVE A;  2HAW A;  2QB6 A;  3IGH X;  4JUU A;  1BWZ A;  4LG3 A;  4LS9 A;  1T6K A;  4IJZ A;  2OTN A;  1S7J A;  4JD7 A;  1QYA A;  1U1V A;  3EJX A;  2ZVF A;  3G7K A;  1IR6 A;  4K7G B;  5H2G A;  1U1X A;  2ZXO A;  3ICJ A;  4GL6 A;  1W62 A;  2KPT A;  3DEV A;  2QB7 A;  4Q2H A;  2ENX A;  1U0K A;  3PVH A;  1QY9 A;  2GKJ A;  5IWE A;  2LT2 A;  3WQZ A;  2Q9J A;  5HA4 A;  1K20 A;  1WPP A;  2MPB A;  1W61 A;  1K23 A;  3W5W A;  3PW9 A;  4J9X A;  1WPM A;  2AZP A;  4RPA A;  2PVZ A;  2QB8 A;  1YM5 A;  2PW0 A;  3EKM A;  1GQZ A;  2YMA A;  4K8L A;  2Q9H A;  2ZXR A;  4J9W A;  1TM0 A;  3EDN A;  4IK0 A;  1XUA A;  3PTJ A;  2KW7 A;  1XUB A;  2ZXP A;  1SDJ A;  5ANP A;  1I74 A;  4OA3 A;  4Q60 A;  4K7X A;  4PY9 A;  2EB0 A;  4JBD A;  5M47 A; 
#chains in the Genus database with same CATH homology
 2H9F A;  5H2Y A;  3G98 A;  4JCI A;  2IW4 A;  4LB0 A;  4DUN A;  2GKE A;  1U1W A;  3FVE A;  2HAW A;  2QB6 A;  3IGH X;  4JUU A;  1BWZ A;  4LG3 A;  4LS9 A;  1T6K A;  4IJZ A;  2OTN A;  1S7J A;  4JD7 A;  1QYA A;  1U1V A;  3EJX A;  2ZVF A;  3G7K A;  1IR6 A;  4K7G B;  5H2G A;  1U1X A;  2ZXO A;  3ICJ A;  4GL6 A;  1W62 A;  2KPT A;  3DEV A;  2QB7 A;  4Q2H A;  2ENX A;  1U0K A;  3PVH A;  1QY9 A;  2GKJ A;  5IWE A;  2LT2 A;  3WQZ A;  2Q9J A;  5HA4 A;  1K20 A;  1WPP A;  2MPB A;  1W61 A;  1K23 A;  3W5W A;  3PW9 A;  4J9X A;  1WPM A;  2AZP A;  4RPA A;  2PVZ A;  2QB8 A;  1YM5 A;  2PW0 A;  3EKM A;  1GQZ A;  2YMA A;  4K8L A;  2Q9H A;  2ZXR A;  4J9W A;  1TM0 A;  3EDN A;  4IK0 A;  1XUA A;  3PTJ A;  2KW7 A;  1XUB A;  2ZXP A;  1SDJ A;  5ANP A;  1I74 A;  4OA3 A;  4Q60 A;  4K7X A;  4PY9 A;  2EB0 A;  4JBD A;  5M47 A; 
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similar chains in the Genus database (?% sequence similarity)
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