2ZVFA

Crystal structure of archaeoglobus fulgidus alanyl-trna synthetase c-terminal dimerization domain
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
170
structure length
170
Chain Sequence
b'GEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEKGAVGCLMAKGEGKVFVVTFSGQKYDARELLREIGRVAKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHEG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Alanyl-tRNA synthetase
publication title Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
molecule tags Ligase
total genus 49
structure length 170
sequence length 170
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 6.1.1.7: Alanine--tRNA ligase.
pdb deposition date 2008-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.40 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2zvfA02
3WQZA 2ZVFA 3G98A
chains in the Genus database with same CATH superfamily
3PW9A 2LT2A 2PW0A 2QB7A 1QYAA 4IJZA 2MPBA 4J9XA 2AZPA 3G7KA 2KW7A 2PVZA 2QB8A 2ZVFA 1W62A 2ENXA 3G98A 1U1XA 2OTNA 2GKEA 5IWEA 3ICJA 1WPMA 2GKJA 2H9FA 4PY9A 1I74A 3IGHX 1TM0A 3FVEA 1XUAA 3EKMA 3EJXA 4DUNA 3WQZA 4LG3A 4GL6A 2EB0A 2YMAA 4IK0A 5H2GA 4LB0A 1K23A 4Q60A 1U0KA 2IW4A 3EDNA 4K7GB 5H2YA 1QY9A 1WPPA 5M47A 4J9WA 5ANPA 1XUBA 5HA4A 1U1WA 1SDJA 2Q9HA 3PVHA 4K7XA 2ZXPA 3PTJA 3DEVA 2KPTA 4JD7A 1BWZA 4Q2HA 2QB6A 2ZXOA 4JBDA 2ZXRA 3W5WA 1U1VA 1K20A 1W61A 1S7JA 4OA3A 1IR6A 2HAWA 2Q9JA 1YM5A 4RPAA 4LS9A 1T6KA 4JCIA 4K8LA 4JUUA 1GQZA
chains in the Genus database with same CATH topology
3PW9A 2LT2A 2PW0A 2QB7A 1QYAA 4IJZA 2MPBA 4J9XA 2AZPA 3G7KA 2KW7A 2PVZA 2QB8A 2ZVFA 1W62A 2ENXA 3G98A 1U1XA 2OTNA 2GKEA 5IWEA 3ICJA 1WPMA 2GKJA 2H9FA 4PY9A 1I74A 3IGHX 1TM0A 3FVEA 1XUAA 3EKMA 3EJXA 4DUNA 3WQZA 4LG3A 4GL6A 2EB0A 2YMAA 4IK0A 5H2GA 4LB0A 1K23A 4Q60A 1U0KA 2IW4A 3EDNA 4K7GB 5H2YA 1QY9A 1WPPA 5M47A 4J9WA 5ANPA 1XUBA 5HA4A 1U1WA 1SDJA 2Q9HA 3PVHA 4K7XA 2ZXPA 3PTJA 3DEVA 2KPTA 4JD7A 1BWZA 4Q2HA 2QB6A 2ZXOA 4JBDA 2ZXRA 3W5WA 1U1VA 1K20A 1W61A 1S7JA 4OA3A 1IR6A 2HAWA 2Q9JA 1YM5A 4RPAA 4LS9A 1T6KA 4JCIA 4K8LA 4JUUA 1GQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WQZ A;  2ZVF A;  3G98 A; 
#chains in the Genus database with same CATH topology
 3PW9 A;  2LT2 A;  2PW0 A;  2QB7 A;  1QYA A;  4IJZ A;  2MPB A;  4J9X A;  2AZP A;  3G7K A;  2KW7 A;  2PVZ A;  2QB8 A;  2ZVF A;  1W62 A;  2ENX A;  3G98 A;  1U1X A;  2OTN A;  2GKE A;  5IWE A;  3ICJ A;  1WPM A;  2GKJ A;  2H9F A;  4PY9 A;  1I74 A;  3IGH X;  1TM0 A;  3FVE A;  1XUA A;  3EKM A;  3EJX A;  4DUN A;  3WQZ A;  4LG3 A;  4GL6 A;  2EB0 A;  2YMA A;  4IK0 A;  5H2G A;  4LB0 A;  1K23 A;  4Q60 A;  1U0K A;  2IW4 A;  3EDN A;  4K7G B;  5H2Y A;  1QY9 A;  1WPP A;  5M47 A;  4J9W A;  5ANP A;  1XUB A;  5HA4 A;  1U1W A;  1SDJ A;  2Q9H A;  3PVH A;  4K7X A;  2ZXP A;  3PTJ A;  3DEV A;  2KPT A;  4JD7 A;  1BWZ A;  4Q2H A;  2QB6 A;  2ZXO A;  4JBD A;  2ZXR A;  3W5W A;  1U1V A;  1K20 A;  1W61 A;  1S7J A;  4OA3 A;  1IR6 A;  2HAW A;  2Q9J A;  1YM5 A;  4RPA A;  4LS9 A;  1T6K A;  4JCI A;  4K8L A;  4JUU A;  1GQZ A; 
#chains in the Genus database with same CATH homology
 3PW9 A;  2LT2 A;  2PW0 A;  2QB7 A;  1QYA A;  4IJZ A;  2MPB A;  4J9X A;  2AZP A;  3G7K A;  2KW7 A;  2PVZ A;  2QB8 A;  2ZVF A;  1W62 A;  2ENX A;  3G98 A;  1U1X A;  2OTN A;  2GKE A;  5IWE A;  3ICJ A;  1WPM A;  2GKJ A;  2H9F A;  4PY9 A;  1I74 A;  3IGH X;  1TM0 A;  3FVE A;  1XUA A;  3EKM A;  3EJX A;  4DUN A;  3WQZ A;  4LG3 A;  4GL6 A;  2EB0 A;  2YMA A;  4IK0 A;  5H2G A;  4LB0 A;  1K23 A;  4Q60 A;  1U0K A;  2IW4 A;  3EDN A;  4K7G B;  5H2Y A;  1QY9 A;  1WPP A;  5M47 A;  4J9W A;  5ANP A;  1XUB A;  5HA4 A;  1U1W A;  1SDJ A;  2Q9H A;  3PVH A;  4K7X A;  2ZXP A;  3PTJ A;  3DEV A;  2KPT A;  4JD7 A;  1BWZ A;  4Q2H A;  2QB6 A;  2ZXO A;  4JBD A;  2ZXR A;  3W5W A;  1U1V A;  1K20 A;  1W61 A;  1S7J A;  4OA3 A;  1IR6 A;  2HAW A;  2Q9J A;  1YM5 A;  4RPA A;  4LS9 A;  1T6K A;  4JCI A;  4K8L A;  4JUU A;  1GQZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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