2ZVFA

Crystal structure of archaeoglobus fulgidus alanyl-trna synthetase c-terminal dimerization domain
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
170
structure length
170
Chain Sequence
GEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEKGAVGCLMAKGEGKVFVVTFSGQKYDARELLREIGRVAKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
molecule tags Ligase
molecule keywords Alanyl-tRNA synthetase
total genus 49
structure length 170
sequence length 170
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 6.1.1.7: Alanine--tRNA ligase.
pdb deposition date 2008-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.40 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2zvfA02
2ZVFA 3WQZA 3G98A
chains in the Genus database with same CATH superfamily
2OTNA 3WQZA 1WPMA 1I74A 2HAWA 2IW4A 3PVHA 1U0KA 2ZXPA 4LB0A 1K20A 4Q60A 1QY9A 2GKJA 2MPBA 2H9FA 1U1WA 5HA4A 2YMAA 3G98A 2Q9HA 1TM0A 5ANPA 1BWZA 2QB8A 2KW7A 4LG3A 2GKEA 4J9XA 3EKMA 1QYAA 3IGHX 1U1XA 1IR6A 4LS9A 1SDJA 1XUAA 1U1VA 1XUBA 4PY9A 1W62A 2ZVFA 5M47A 4Q2HA 4OA3A 3W5WA 4JD7A 2ENXA 4GL6A 4IK0A 4JUUA 4DUNA 4K8LA 1YM5A 2PVZA 4RPAA 1GQZA 2KPTA 5H2YA 3EDNA 5H2GA 3PW9A 4K7GB 2QB7A 2PW0A 2ZXRA 1W61A 3PTJA 3DEVA 1T6KA 1S7JA 4IJZA 3EJXA 2LT2A 2QB6A 3FVEA 1K23A 5IWEA 4K7XA 4J9WA 3ICJA 2ZXOA 1WPPA 2AZPA 4JBDA 2Q9JA 3G7KA 4JCIA 2EB0A
chains in the Genus database with same CATH topology
2OTNA 3WQZA 1WPMA 1I74A 2HAWA 2IW4A 3PVHA 1U0KA 2ZXPA 4LB0A 1K20A 4Q60A 1QY9A 2GKJA 2MPBA 2H9FA 1U1WA 5HA4A 2YMAA 3G98A 2Q9HA 1TM0A 5ANPA 1BWZA 2QB8A 2KW7A 4LG3A 2GKEA 4J9XA 3EKMA 1QYAA 3IGHX 1U1XA 1IR6A 4LS9A 1SDJA 1XUAA 1U1VA 1XUBA 4PY9A 1W62A 2ZVFA 5M47A 4Q2HA 4OA3A 3W5WA 4JD7A 2ENXA 4GL6A 4IK0A 4JUUA 4DUNA 4K8LA 1YM5A 2PVZA 4RPAA 1GQZA 2KPTA 5H2YA 3EDNA 5H2GA 3PW9A 4K7GB 2QB7A 2PW0A 2ZXRA 1W61A 3PTJA 3DEVA 1T6KA 1S7JA 4IJZA 3EJXA 2LT2A 2QB6A 3FVEA 1K23A 5IWEA 4K7XA 4J9WA 3ICJA 2ZXOA 1WPPA 2AZPA 4JBDA 2Q9JA 3G7KA 4JCIA 2EB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZVF A;  3WQZ A;  3G98 A; 
#chains in the Genus database with same CATH topology
 2OTN A;  3WQZ A;  1WPM A;  1I74 A;  2HAW A;  2IW4 A;  3PVH A;  1U0K A;  2ZXP A;  4LB0 A;  1K20 A;  4Q60 A;  1QY9 A;  2GKJ A;  2MPB A;  2H9F A;  1U1W A;  5HA4 A;  2YMA A;  3G98 A;  2Q9H A;  1TM0 A;  5ANP A;  1BWZ A;  2QB8 A;  2KW7 A;  4LG3 A;  2GKE A;  4J9X A;  3EKM A;  1QYA A;  3IGH X;  1U1X A;  1IR6 A;  4LS9 A;  1SDJ A;  1XUA A;  1U1V A;  1XUB A;  4PY9 A;  1W62 A;  2ZVF A;  5M47 A;  4Q2H A;  4OA3 A;  3W5W A;  4JD7 A;  2ENX A;  4GL6 A;  4IK0 A;  4JUU A;  4DUN A;  4K8L A;  1YM5 A;  2PVZ A;  4RPA A;  1GQZ A;  2KPT A;  5H2Y A;  3EDN A;  5H2G A;  3PW9 A;  4K7G B;  2QB7 A;  2PW0 A;  2ZXR A;  1W61 A;  3PTJ A;  3DEV A;  1T6K A;  1S7J A;  4IJZ A;  3EJX A;  2LT2 A;  2QB6 A;  3FVE A;  1K23 A;  5IWE A;  4K7X A;  4J9W A;  3ICJ A;  2ZXO A;  1WPP A;  2AZP A;  4JBD A;  2Q9J A;  3G7K A;  4JCI A;  2EB0 A; 
#chains in the Genus database with same CATH homology
 2OTN A;  3WQZ A;  1WPM A;  1I74 A;  2HAW A;  2IW4 A;  3PVH A;  1U0K A;  2ZXP A;  4LB0 A;  1K20 A;  4Q60 A;  1QY9 A;  2GKJ A;  2MPB A;  2H9F A;  1U1W A;  5HA4 A;  2YMA A;  3G98 A;  2Q9H A;  1TM0 A;  5ANP A;  1BWZ A;  2QB8 A;  2KW7 A;  4LG3 A;  2GKE A;  4J9X A;  3EKM A;  1QYA A;  3IGH X;  1U1X A;  1IR6 A;  4LS9 A;  1SDJ A;  1XUA A;  1U1V A;  1XUB A;  4PY9 A;  1W62 A;  2ZVF A;  5M47 A;  4Q2H A;  4OA3 A;  3W5W A;  4JD7 A;  2ENX A;  4GL6 A;  4IK0 A;  4JUU A;  4DUN A;  4K8L A;  1YM5 A;  2PVZ A;  4RPA A;  1GQZ A;  2KPT A;  5H2Y A;  3EDN A;  5H2G A;  3PW9 A;  4K7G B;  2QB7 A;  2PW0 A;  2ZXR A;  1W61 A;  3PTJ A;  3DEV A;  1T6K A;  1S7J A;  4IJZ A;  3EJX A;  2LT2 A;  2QB6 A;  3FVE A;  1K23 A;  5IWE A;  4K7X A;  4J9W A;  3ICJ A;  2ZXO A;  1WPP A;  2AZP A;  4JBD A;  2Q9J A;  3G7K A;  4JCI A;  2EB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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