2H9FA

Crystal structure of a prpf family methylaconitate isomerase (pa0793) from pseudomonas aeruginosa at 1.95 a resolution
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
395
structure length
391
Chain Sequence
b'MAHPPQIRIPATYLRGGTSKGVFFRLEDLPESCRVPGEARDRLFMRVIGSPDPYAAHIDGMGGATSSTSKCVILSKSSQPGHDVDYLYGQVSIDKPFVDWSGNCGNLSTGAGAFALHAGLVDPARIPEDGICEVRIWQANIGKTIIAHVPVSGGQVQETGDFELDGVTFPAAEIVLEFLDPSDGGAIFPTGNLVDDLEVPGVGTFKATMINAGIPTVFVNAEEIGYRGTELREEINGDPQQLARFERIRVAGALRMGLIKTPEEAATRQHTPKIAFVAPPRDYRTASGKLVAAGDIDLLVRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGERSAVRFGHPSGTLRVGAEASQANGEWTVTKAIMSRSARILMEGWVRVPGDAF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein
publication title Crystal structure of hypothetical protein (np_249484.1) from Pseudomonas aeruginosa at 1.95 A resolution
rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 98
structure length 391
sequence length 395
ec nomenclature
pdb deposition date 2006-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04303 PrpF PrpF protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2h9fA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2h9fA01
4IJZA 5M47A 1S7JA 3G7KA 1QY9A 4DUNA 1TM0A 5H2YA 1T6KA 5HA4A 2Q9HA 4IK0A 1XUAA 4K7XA 2GKJA 2Q9JA 1W62A 4JCIA 2PW0A 1GQZA 2GKEA 4JD7A 1U1VA 3EKMA 2PVZA 4Q60A 1U0KA 2AZPA 5IWEA 1YM5A 1BWZA 4JBDA 4K7GB 5H2GA 1XUBA 3EDNA 2OTNA 4K8LA 4Q2HA 1U1XA 4JUUA 1W61A 4J9WA 3EJXA 3FVEA 2H9FA 1QYAA 1U1WA 1SDJA 4LB0A 4J9XA
chains in the Genus database with same CATH superfamily
2IW4A 3G7KA 1K20A 2QB7A 1SDJA 1TM0A 5H2YA 2YMAA 2ZVFA 4IK0A 2EB0A 3W5WA 4JD7A 2AZPA 5IWEA 3WQZA 1XUBA 3EDNA 2ZXRA 1U1XA 4JUUA 4J9WA 1WPPA 3PTJA 1QY9A 2Q9HA 2QB8A 4K7XA 1XUAA 2GKJA 1W62A 4JCIA 4PY9A 1GQZA 2GKEA 1U1VA 3EKMA 1YM5A 4JBDA 4LS9A 3EJXA 3FVEA 4OA3A 1QYAA 2ENXA 4RPAA 5M47A 1I74A 4DUNA 5HA4A 1IR6A 2PW0A 4Q60A 1U0KA 2HAWA 4K7GB 5H2GA 3ICJA 2ZXOA 4K8LA 1W61A 4LB0A 2H9FA 3G98A 3PW9A 2QB6A 4IJZA 1K23A 1WPMA 1S7JA 2MPBA 5ANPA 1T6KA 3IGHX 4GL6A 2Q9JA 3DEVA 2PVZA 2KW7A 2ZXPA 2KPTA 2LT2A 4LG3A 3PVHA 2OTNA 4Q2HA 1U1WA 1BWZA 4J9XA
chains in the Genus database with same CATH topology
2IW4A 3G7KA 1K20A 2QB7A 1SDJA 1TM0A 5H2YA 2YMAA 2ZVFA 4IK0A 2EB0A 3W5WA 4JD7A 2AZPA 5IWEA 3WQZA 1XUBA 3EDNA 2ZXRA 1U1XA 4JUUA 4J9WA 1WPPA 3PTJA 1QY9A 2Q9HA 2QB8A 4K7XA 1XUAA 2GKJA 1W62A 4JCIA 4PY9A 1GQZA 2GKEA 1U1VA 3EKMA 1YM5A 4JBDA 4LS9A 3EJXA 3FVEA 4OA3A 1QYAA 2ENXA 4RPAA 5M47A 1I74A 4DUNA 5HA4A 1IR6A 2PW0A 4Q60A 1U0KA 2HAWA 4K7GB 5H2GA 3ICJA 2ZXOA 4K8LA 1W61A 4LB0A 2H9FA 3G98A 3PW9A 2QB6A 4IJZA 1K23A 1WPMA 1S7JA 2MPBA 5ANPA 1T6KA 3IGHX 4GL6A 2Q9JA 3DEVA 2PVZA 2KW7A 2ZXPA 2KPTA 2LT2A 4LG3A 3PVHA 2OTNA 4Q2HA 1U1WA 1BWZA 4J9XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IJZ A;  5M47 A;  1S7J A;  3G7K A;  1QY9 A;  4DUN A;  1TM0 A;  5H2Y A;  1T6K A;  5HA4 A;  2Q9H A;  4IK0 A;  1XUA A;  4K7X A;  2GKJ A;  2Q9J A;  1W62 A;  4JCI A;  2PW0 A;  1GQZ A;  2GKE A;  4JD7 A;  1U1V A;  3EKM A;  2PVZ A;  4Q60 A;  1U0K A;  2AZP A;  5IWE A;  1YM5 A;  1BWZ A;  4JBD A;  4K7G B;  5H2G A;  1XUB A;  3EDN A;  2OTN A;  4K8L A;  4Q2H A;  1U1X A;  4JUU A;  1W61 A;  4J9W A;  3EJX A;  3FVE A;  2H9F A;  1QYA A;  1U1W A;  1SDJ A;  4LB0 A;  4J9X A; 
#chains in the Genus database with same CATH topology
 2IW4 A;  3G7K A;  1K20 A;  2QB7 A;  1SDJ A;  1TM0 A;  5H2Y A;  2YMA A;  2ZVF A;  4IK0 A;  2EB0 A;  3W5W A;  4JD7 A;  2AZP A;  5IWE A;  3WQZ A;  1XUB A;  3EDN A;  2ZXR A;  1U1X A;  4JUU A;  4J9W A;  1WPP A;  3PTJ A;  1QY9 A;  2Q9H A;  2QB8 A;  4K7X A;  1XUA A;  2GKJ A;  1W62 A;  4JCI A;  4PY9 A;  1GQZ A;  2GKE A;  1U1V A;  3EKM A;  1YM5 A;  4JBD A;  4LS9 A;  3EJX A;  3FVE A;  4OA3 A;  1QYA A;  2ENX A;  4RPA A;  5M47 A;  1I74 A;  4DUN A;  5HA4 A;  1IR6 A;  2PW0 A;  4Q60 A;  1U0K A;  2HAW A;  4K7G B;  5H2G A;  3ICJ A;  2ZXO A;  4K8L A;  1W61 A;  4LB0 A;  2H9F A;  3G98 A;  3PW9 A;  2QB6 A;  4IJZ A;  1K23 A;  1WPM A;  1S7J A;  2MPB A;  5ANP A;  1T6K A;  3IGH X;  4GL6 A;  2Q9J A;  3DEV A;  2PVZ A;  2KW7 A;  2ZXP A;  2KPT A;  2LT2 A;  4LG3 A;  3PVH A;  2OTN A;  4Q2H A;  1U1W A;  1BWZ A;  4J9X A; 
#chains in the Genus database with same CATH homology
 2IW4 A;  3G7K A;  1K20 A;  2QB7 A;  1SDJ A;  1TM0 A;  5H2Y A;  2YMA A;  2ZVF A;  4IK0 A;  2EB0 A;  3W5W A;  4JD7 A;  2AZP A;  5IWE A;  3WQZ A;  1XUB A;  3EDN A;  2ZXR A;  1U1X A;  4JUU A;  4J9W A;  1WPP A;  3PTJ A;  1QY9 A;  2Q9H A;  2QB8 A;  4K7X A;  1XUA A;  2GKJ A;  1W62 A;  4JCI A;  4PY9 A;  1GQZ A;  2GKE A;  1U1V A;  3EKM A;  1YM5 A;  4JBD A;  4LS9 A;  3EJX A;  3FVE A;  4OA3 A;  1QYA A;  2ENX A;  4RPA A;  5M47 A;  1I74 A;  4DUN A;  5HA4 A;  1IR6 A;  2PW0 A;  4Q60 A;  1U0K A;  2HAW A;  4K7G B;  5H2G A;  3ICJ A;  2ZXO A;  4K8L A;  1W61 A;  4LB0 A;  2H9F A;  3G98 A;  3PW9 A;  2QB6 A;  4IJZ A;  1K23 A;  1WPM A;  1S7J A;  2MPB A;  5ANP A;  1T6K A;  3IGH X;  4GL6 A;  2Q9J A;  3DEV A;  2PVZ A;  2KW7 A;  2ZXP A;  2KPT A;  2LT2 A;  4LG3 A;  3PVH A;  2OTN A;  4Q2H A;  1U1W A;  1BWZ A;  4J9X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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