1T6KA

Crystal structure of phzf from pseudomonas fluorescens 2-79
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase
molecule keywords Phenazine biosynthesis protein phzF
total genus 73
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA01
4K8LA 1W61A 4IJZA 1T6KA 2AZPA 2Q9JA 2GKJA 2Q9HA 5HA4A 4IK0A 1U1XA 1TM0A 3FVEA 4K7XA 1U0KA 3EKMA 4J9WA 4Q2HA 4LB0A 2OTNA 4Q60A 5M47A 1QYAA 5H2GA 2H9FA 4JUUA 2PVZA 3EDNA 4JD7A 1GQZA 2GKEA 5IWEA 1W62A 4J9XA 1U1WA 5H2YA 3G7KA 4JCIA 1BWZA 1XUBA 4DUNA 1S7JA 3EJXA 4K7GB 1QY9A 2PW0A 1SDJA 1YM5A 4JBDA 1XUAA 1U1VA
chains in the Genus database with same CATH superfamily
5ANPA 2EB0A 4IK0A 1TM0A 3PVHA 4K7XA 3EKMA 4Q2HA 4PY9A 3EDNA 2GKEA 5IWEA 1WPPA 1K23A 1QY9A 2QB8A 2OTNA 4IJZA 2Q9JA 2QB7A 2ZVFA 2LT2A 3WQZA 4J9WA 5M47A 4LG3A 2H9FA 3DEVA 4LS9A 2PVZA 1GQZA 1U1WA 4OA3A 1I74A 2HAWA 4K8LA 1XUAA 5H2GA 1U1VA 2QB6A 2AZPA 2Q9HA 1U1XA 3FVEA 4LB0A 2KPTA 4JUUA 1IR6A 4JD7A 4J9XA 3G7KA 4JCIA 1BWZA 1S7JA 2KW7A 4K7GB 2PW0A 1SDJA 1YM5A 2ENXA 3W5WA 3PW9A 4JBDA 4GL6A 1W61A 2ZXRA 3PTJA 1T6KA 2GKJA 5HA4A 2MPBA 4RPAA 1U0KA 3IGHX 2ZXPA 4Q60A 1QYAA 3G98A 1WPMA 3ICJA 2ZXOA 1W62A 5H2YA 1K20A 4DUNA 1XUBA 3EJXA 2YMAA 2IW4A
chains in the Genus database with same CATH topology
5ANPA 2EB0A 4IK0A 1TM0A 3PVHA 4K7XA 3EKMA 4Q2HA 4PY9A 3EDNA 2GKEA 5IWEA 1WPPA 1K23A 1QY9A 2QB8A 2OTNA 4IJZA 2Q9JA 2QB7A 2ZVFA 2LT2A 3WQZA 4J9WA 5M47A 4LG3A 2H9FA 3DEVA 4LS9A 2PVZA 1GQZA 1U1WA 4OA3A 1I74A 2HAWA 4K8LA 1XUAA 5H2GA 1U1VA 2QB6A 2AZPA 2Q9HA 1U1XA 3FVEA 4LB0A 2KPTA 4JUUA 1IR6A 4JD7A 4J9XA 3G7KA 4JCIA 1BWZA 1S7JA 2KW7A 4K7GB 2PW0A 1SDJA 1YM5A 2ENXA 3W5WA 3PW9A 4JBDA 4GL6A 1W61A 2ZXRA 3PTJA 1T6KA 2GKJA 5HA4A 2MPBA 4RPAA 1U0KA 3IGHX 2ZXPA 4Q60A 1QYAA 3G98A 1WPMA 3ICJA 2ZXOA 1W62A 5H2YA 1K20A 4DUNA 1XUBA 3EJXA 2YMAA 2IW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K8L A;  1W61 A;  4IJZ A;  1T6K A;  2AZP A;  2Q9J A;  2GKJ A;  2Q9H A;  5HA4 A;  4IK0 A;  1U1X A;  1TM0 A;  3FVE A;  4K7X A;  1U0K A;  3EKM A;  4J9W A;  4Q2H A;  4LB0 A;  2OTN A;  4Q60 A;  5M47 A;  1QYA A;  5H2G A;  2H9F A;  4JUU A;  2PVZ A;  3EDN A;  4JD7 A;  1GQZ A;  2GKE A;  5IWE A;  1W62 A;  4J9X A;  1U1W A;  5H2Y A;  3G7K A;  4JCI A;  1BWZ A;  1XUB A;  4DUN A;  1S7J A;  3EJX A;  4K7G B;  1QY9 A;  2PW0 A;  1SDJ A;  1YM5 A;  4JBD A;  1XUA A;  1U1V A; 
#chains in the Genus database with same CATH topology
 5ANP A;  2EB0 A;  4IK0 A;  1TM0 A;  3PVH A;  4K7X A;  3EKM A;  4Q2H A;  4PY9 A;  3EDN A;  2GKE A;  5IWE A;  1WPP A;  1K23 A;  1QY9 A;  2QB8 A;  2OTN A;  4IJZ A;  2Q9J A;  2QB7 A;  2ZVF A;  2LT2 A;  3WQZ A;  4J9W A;  5M47 A;  4LG3 A;  2H9F A;  3DEV A;  4LS9 A;  2PVZ A;  1GQZ A;  1U1W A;  4OA3 A;  1I74 A;  2HAW A;  4K8L A;  1XUA A;  5H2G A;  1U1V A;  2QB6 A;  2AZP A;  2Q9H A;  1U1X A;  3FVE A;  4LB0 A;  2KPT A;  4JUU A;  1IR6 A;  4JD7 A;  4J9X A;  3G7K A;  4JCI A;  1BWZ A;  1S7J A;  2KW7 A;  4K7G B;  2PW0 A;  1SDJ A;  1YM5 A;  2ENX A;  3W5W A;  3PW9 A;  4JBD A;  4GL6 A;  1W61 A;  2ZXR A;  3PTJ A;  1T6K A;  2GKJ A;  5HA4 A;  2MPB A;  4RPA A;  1U0K A;  3IGH X;  2ZXP A;  4Q60 A;  1QYA A;  3G98 A;  1WPM A;  3ICJ A;  2ZXO A;  1W62 A;  5H2Y A;  1K20 A;  4DUN A;  1XUB A;  3EJX A;  2YMA A;  2IW4 A; 
#chains in the Genus database with same CATH homology
 5ANP A;  2EB0 A;  4IK0 A;  1TM0 A;  3PVH A;  4K7X A;  3EKM A;  4Q2H A;  4PY9 A;  3EDN A;  2GKE A;  5IWE A;  1WPP A;  1K23 A;  1QY9 A;  2QB8 A;  2OTN A;  4IJZ A;  2Q9J A;  2QB7 A;  2ZVF A;  2LT2 A;  3WQZ A;  4J9W A;  5M47 A;  4LG3 A;  2H9F A;  3DEV A;  4LS9 A;  2PVZ A;  1GQZ A;  1U1W A;  4OA3 A;  1I74 A;  2HAW A;  4K8L A;  1XUA A;  5H2G A;  1U1V A;  2QB6 A;  2AZP A;  2Q9H A;  1U1X A;  3FVE A;  4LB0 A;  2KPT A;  4JUU A;  1IR6 A;  4JD7 A;  4J9X A;  3G7K A;  4JCI A;  1BWZ A;  1S7J A;  2KW7 A;  4K7G B;  2PW0 A;  1SDJ A;  1YM5 A;  2ENX A;  3W5W A;  3PW9 A;  4JBD A;  4GL6 A;  1W61 A;  2ZXR A;  3PTJ A;  1T6K A;  2GKJ A;  5HA4 A;  2MPB A;  4RPA A;  1U0K A;  3IGH X;  2ZXP A;  4Q60 A;  1QYA A;  3G98 A;  1WPM A;  3ICJ A;  2ZXO A;  1W62 A;  5H2Y A;  1K20 A;  4DUN A;  1XUB A;  3EJX A;  2YMA A;  2IW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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