1T6KA

Crystal structure of phzf from pseudomonas fluorescens 2-79
Total Genus 73
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
278
structure length
278
Chain Sequence
b'MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Phenazine biosynthesis protein phzF
publication title Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase
total genus 73
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA01
5M47A 3EJXA 1QYAA 5IWEA 1W62A 2PVZA 1TM0A 3G7KA 1U0KA 3EDNA 1SDJA 2Q9HA 4JBDA 1U1XA 2PW0A 1U1VA 4JD7A 4K8LA 4J9XA 1T6KA 1S7JA 5H2GA 4IK0A 4LB0A 4K7XA 1XUBA 4Q60A 5HA4A 2H9FA 4K7GB 1BWZA 2OTNA 4Q2HA 4J9WA 1QY9A 2AZPA 2GKEA 5H2YA 2Q9JA 3EKMA 4JUUA 1W61A 4DUNA 4JCIA 1GQZA 1U1WA 2GKJA 1YM5A 3FVEA 1XUAA 4IJZA
chains in the Genus database with same CATH superfamily
1WPMA 1W62A 1TM0A 1U1XA 4LS9A 4K8LA 2ZXPA 2ZXOA 4IK0A 1I74A 1XUBA 2MPBA 5HA4A 4LG3A 4J9WA 1QY9A 2LT2A 2ENXA 4JCIA 3DEVA 2GKJA 3FVEA 1K23A 4IJZA 1IR6A 3EJXA 3G7KA 1U0KA 3EDNA 1SDJA 4JBDA 2ZVFA 1T6KA 4K7XA 4GL6A 2YMAA 4Q60A 2HAWA 2QB8A 1BWZA 4Q2HA 3WQZA 2GKEA 2Q9JA 4JUUA 1W61A 3ICJA 2ZXRA 2KW7A 5M47A 2PVZA 5ANPA 3W5WA 4PY9A 3G98A 2H9FA 4K7GB 3PW9A 2KPTA 3PTJA 5H2YA 4RPAA 3EKMA 1GQZA 1U1WA 2QB6A 1QYAA 5IWEA 2Q9HA 2QB7A 1K20A 2PW0A 1U1VA 4JD7A 4J9XA 5H2GA 1S7JA 2EB0A 4LB0A 2IW4A 3IGHX 2OTNA 4OA3A 2AZPA 4DUNA 1WPPA 3PVHA 1YM5A 1XUAA
chains in the Genus database with same CATH topology
1WPMA 1W62A 1TM0A 1U1XA 4LS9A 4K8LA 2ZXPA 2ZXOA 4IK0A 1I74A 1XUBA 2MPBA 5HA4A 4LG3A 4J9WA 1QY9A 2LT2A 2ENXA 4JCIA 3DEVA 2GKJA 3FVEA 1K23A 4IJZA 1IR6A 3EJXA 3G7KA 1U0KA 3EDNA 1SDJA 4JBDA 2ZVFA 1T6KA 4K7XA 4GL6A 2YMAA 4Q60A 2HAWA 2QB8A 1BWZA 4Q2HA 3WQZA 2GKEA 2Q9JA 4JUUA 1W61A 3ICJA 2ZXRA 2KW7A 5M47A 2PVZA 5ANPA 3W5WA 4PY9A 3G98A 2H9FA 4K7GB 3PW9A 2KPTA 3PTJA 5H2YA 4RPAA 3EKMA 1GQZA 1U1WA 2QB6A 1QYAA 5IWEA 2Q9HA 2QB7A 1K20A 2PW0A 1U1VA 4JD7A 4J9XA 5H2GA 1S7JA 2EB0A 4LB0A 2IW4A 3IGHX 2OTNA 4OA3A 2AZPA 4DUNA 1WPPA 3PVHA 1YM5A 1XUAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M47 A;  3EJX A;  1QYA A;  5IWE A;  1W62 A;  2PVZ A;  1TM0 A;  3G7K A;  1U0K A;  3EDN A;  1SDJ A;  2Q9H A;  4JBD A;  1U1X A;  2PW0 A;  1U1V A;  4JD7 A;  4K8L A;  4J9X A;  1T6K A;  1S7J A;  5H2G A;  4IK0 A;  4LB0 A;  4K7X A;  1XUB A;  4Q60 A;  5HA4 A;  2H9F A;  4K7G B;  1BWZ A;  2OTN A;  4Q2H A;  4J9W A;  1QY9 A;  2AZP A;  2GKE A;  5H2Y A;  2Q9J A;  3EKM A;  4JUU A;  1W61 A;  4DUN A;  4JCI A;  1GQZ A;  1U1W A;  2GKJ A;  1YM5 A;  3FVE A;  1XUA A;  4IJZ A; 
#chains in the Genus database with same CATH topology
 1WPM A;  1W62 A;  1TM0 A;  1U1X A;  4LS9 A;  4K8L A;  2ZXP A;  2ZXO A;  4IK0 A;  1I74 A;  1XUB A;  2MPB A;  5HA4 A;  4LG3 A;  4J9W A;  1QY9 A;  2LT2 A;  2ENX A;  4JCI A;  3DEV A;  2GKJ A;  3FVE A;  1K23 A;  4IJZ A;  1IR6 A;  3EJX A;  3G7K A;  1U0K A;  3EDN A;  1SDJ A;  4JBD A;  2ZVF A;  1T6K A;  4K7X A;  4GL6 A;  2YMA A;  4Q60 A;  2HAW A;  2QB8 A;  1BWZ A;  4Q2H A;  3WQZ A;  2GKE A;  2Q9J A;  4JUU A;  1W61 A;  3ICJ A;  2ZXR A;  2KW7 A;  5M47 A;  2PVZ A;  5ANP A;  3W5W A;  4PY9 A;  3G98 A;  2H9F A;  4K7G B;  3PW9 A;  2KPT A;  3PTJ A;  5H2Y A;  4RPA A;  3EKM A;  1GQZ A;  1U1W A;  2QB6 A;  1QYA A;  5IWE A;  2Q9H A;  2QB7 A;  1K20 A;  2PW0 A;  1U1V A;  4JD7 A;  4J9X A;  5H2G A;  1S7J A;  2EB0 A;  4LB0 A;  2IW4 A;  3IGH X;  2OTN A;  4OA3 A;  2AZP A;  4DUN A;  1WPP A;  3PVH A;  1YM5 A;  1XUA A; 
#chains in the Genus database with same CATH homology
 1WPM A;  1W62 A;  1TM0 A;  1U1X A;  4LS9 A;  4K8L A;  2ZXP A;  2ZXO A;  4IK0 A;  1I74 A;  1XUB A;  2MPB A;  5HA4 A;  4LG3 A;  4J9W A;  1QY9 A;  2LT2 A;  2ENX A;  4JCI A;  3DEV A;  2GKJ A;  3FVE A;  1K23 A;  4IJZ A;  1IR6 A;  3EJX A;  3G7K A;  1U0K A;  3EDN A;  1SDJ A;  4JBD A;  2ZVF A;  1T6K A;  4K7X A;  4GL6 A;  2YMA A;  4Q60 A;  2HAW A;  2QB8 A;  1BWZ A;  4Q2H A;  3WQZ A;  2GKE A;  2Q9J A;  4JUU A;  1W61 A;  3ICJ A;  2ZXR A;  2KW7 A;  5M47 A;  2PVZ A;  5ANP A;  3W5W A;  4PY9 A;  3G98 A;  2H9F A;  4K7G B;  3PW9 A;  2KPT A;  3PTJ A;  5H2Y A;  4RPA A;  3EKM A;  1GQZ A;  1U1W A;  2QB6 A;  1QYA A;  5IWE A;  2Q9H A;  2QB7 A;  1K20 A;  2PW0 A;  1U1V A;  4JD7 A;  4J9X A;  5H2G A;  1S7J A;  2EB0 A;  4LB0 A;  2IW4 A;  3IGH X;  2OTN A;  4OA3 A;  2AZP A;  4DUN A;  1WPP A;  3PVH A;  1YM5 A;  1XUA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...