1T6KA

Crystal structure of phzf from pseudomonas fluorescens 2-79
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase
molecule keywords Phenazine biosynthesis protein phzF
total genus 73
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1t6kA01
4J9XA 4K7GB 1TM0A 1QYAA 1XUAA 2GKJA 3EKMA 1W61A 5H2GA 4J9WA 2OTNA 2Q9HA 4K8LA 4JBDA 4LB0A 5M47A 2AZPA 1GQZA 1XUBA 5IWEA 1T6KA 1U0KA 1SDJA 1U1WA 1W62A 1U1XA 4JUUA 4Q2HA 2PVZA 3EDNA 3EJXA 4IK0A 4IJZA 1S7JA 4JD7A 4Q60A 1U1VA 2H9FA 5H2YA 1BWZA 2GKEA 2Q9JA 5HA4A 1YM5A 1QY9A 3FVEA 2PW0A 4JCIA 4K7XA 4DUNA 3G7KA
chains in the Genus database with same CATH superfamily
4K7GB 1TM0A 3DEVA 2GKJA 5H2GA 4K8LA 3PW9A 3IGHX 1XUBA 1T6KA 1U0KA 1U1WA 1W62A 1U1XA 5ANPA 2KPTA 3EJXA 4IK0A 1S7JA 4Q60A 2QB6A 2H9FA 2Q9JA 4RPAA 1QYAA 1W61A 2Q9HA 4JBDA 5M47A 1K23A 4LS9A 4OA3A 2YMAA 2QB8A 2ENXA 2GKEA 2MPBA 4LG3A 1WPPA 1YM5A 1QY9A 4JCIA 4K7XA 1IR6A 3G7KA 2ZVFA 3PTJA 4PY9A 1XUAA 3W5WA 4J9WA 2OTNA 4LB0A 2ZXOA 2AZPA 1GQZA 5IWEA 2PVZA 3EDNA 1WPMA 4JD7A 4GL6A 5H2YA 3ICJA 2EB0A 2HAWA 2KW7A 4J9XA 3EKMA 2IW4A 1SDJA 4Q2HA 4JUUA 3G98A 2QB7A 4IJZA 3PVHA 1U1VA 1I74A 1K20A 1BWZA 5HA4A 2LT2A 3WQZA 3FVEA 2PW0A 2ZXRA 2ZXPA 4DUNA
chains in the Genus database with same CATH topology
4K7GB 1TM0A 3DEVA 2GKJA 5H2GA 4K8LA 3PW9A 3IGHX 1XUBA 1T6KA 1U0KA 1U1WA 1W62A 1U1XA 5ANPA 2KPTA 3EJXA 4IK0A 1S7JA 4Q60A 2QB6A 2H9FA 2Q9JA 4RPAA 1QYAA 1W61A 2Q9HA 4JBDA 5M47A 1K23A 4LS9A 4OA3A 2YMAA 2QB8A 2ENXA 2GKEA 2MPBA 4LG3A 1WPPA 1YM5A 1QY9A 4JCIA 4K7XA 1IR6A 3G7KA 2ZVFA 3PTJA 4PY9A 1XUAA 3W5WA 4J9WA 2OTNA 4LB0A 2ZXOA 2AZPA 1GQZA 5IWEA 2PVZA 3EDNA 1WPMA 4JD7A 4GL6A 5H2YA 3ICJA 2EB0A 2HAWA 2KW7A 4J9XA 3EKMA 2IW4A 1SDJA 4Q2HA 4JUUA 3G98A 2QB7A 4IJZA 3PVHA 1U1VA 1I74A 1K20A 1BWZA 5HA4A 2LT2A 3WQZA 3FVEA 2PW0A 2ZXRA 2ZXPA 4DUNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J9X A;  4K7G B;  1TM0 A;  1QYA A;  1XUA A;  2GKJ A;  3EKM A;  1W61 A;  5H2G A;  4J9W A;  2OTN A;  2Q9H A;  4K8L A;  4JBD A;  4LB0 A;  5M47 A;  2AZP A;  1GQZ A;  1XUB A;  5IWE A;  1T6K A;  1U0K A;  1SDJ A;  1U1W A;  1W62 A;  1U1X A;  4JUU A;  4Q2H A;  2PVZ A;  3EDN A;  3EJX A;  4IK0 A;  4IJZ A;  1S7J A;  4JD7 A;  4Q60 A;  1U1V A;  2H9F A;  5H2Y A;  1BWZ A;  2GKE A;  2Q9J A;  5HA4 A;  1YM5 A;  1QY9 A;  3FVE A;  2PW0 A;  4JCI A;  4K7X A;  4DUN A;  3G7K A; 
#chains in the Genus database with same CATH topology
 4K7G B;  1TM0 A;  3DEV A;  2GKJ A;  5H2G A;  4K8L A;  3PW9 A;  3IGH X;  1XUB A;  1T6K A;  1U0K A;  1U1W A;  1W62 A;  1U1X A;  5ANP A;  2KPT A;  3EJX A;  4IK0 A;  1S7J A;  4Q60 A;  2QB6 A;  2H9F A;  2Q9J A;  4RPA A;  1QYA A;  1W61 A;  2Q9H A;  4JBD A;  5M47 A;  1K23 A;  4LS9 A;  4OA3 A;  2YMA A;  2QB8 A;  2ENX A;  2GKE A;  2MPB A;  4LG3 A;  1WPP A;  1YM5 A;  1QY9 A;  4JCI A;  4K7X A;  1IR6 A;  3G7K A;  2ZVF A;  3PTJ A;  4PY9 A;  1XUA A;  3W5W A;  4J9W A;  2OTN A;  4LB0 A;  2ZXO A;  2AZP A;  1GQZ A;  5IWE A;  2PVZ A;  3EDN A;  1WPM A;  4JD7 A;  4GL6 A;  5H2Y A;  3ICJ A;  2EB0 A;  2HAW A;  2KW7 A;  4J9X A;  3EKM A;  2IW4 A;  1SDJ A;  4Q2H A;  4JUU A;  3G98 A;  2QB7 A;  4IJZ A;  3PVH A;  1U1V A;  1I74 A;  1K20 A;  1BWZ A;  5HA4 A;  2LT2 A;  3WQZ A;  3FVE A;  2PW0 A;  2ZXR A;  2ZXP A;  4DUN A; 
#chains in the Genus database with same CATH homology
 4K7G B;  1TM0 A;  3DEV A;  2GKJ A;  5H2G A;  4K8L A;  3PW9 A;  3IGH X;  1XUB A;  1T6K A;  1U0K A;  1U1W A;  1W62 A;  1U1X A;  5ANP A;  2KPT A;  3EJX A;  4IK0 A;  1S7J A;  4Q60 A;  2QB6 A;  2H9F A;  2Q9J A;  4RPA A;  1QYA A;  1W61 A;  2Q9H A;  4JBD A;  5M47 A;  1K23 A;  4LS9 A;  4OA3 A;  2YMA A;  2QB8 A;  2ENX A;  2GKE A;  2MPB A;  4LG3 A;  1WPP A;  1YM5 A;  1QY9 A;  4JCI A;  4K7X A;  1IR6 A;  3G7K A;  2ZVF A;  3PTJ A;  4PY9 A;  1XUA A;  3W5W A;  4J9W A;  2OTN A;  4LB0 A;  2ZXO A;  2AZP A;  1GQZ A;  5IWE A;  2PVZ A;  3EDN A;  1WPM A;  4JD7 A;  4GL6 A;  5H2Y A;  3ICJ A;  2EB0 A;  2HAW A;  2KW7 A;  4J9X A;  3EKM A;  2IW4 A;  1SDJ A;  4Q2H A;  4JUU A;  3G98 A;  2QB7 A;  4IJZ A;  3PVH A;  1U1V A;  1I74 A;  1K20 A;  1BWZ A;  5HA4 A;  2LT2 A;  3WQZ A;  3FVE A;  2PW0 A;  2ZXR A;  2ZXP A;  4DUN A; 
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