1U1WA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
b'MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phenazine biosynthesis protein phzF
publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA01
2Q9HA 4K7GB 3EJXA 5H2GA 1GQZA 1SDJA 1T6KA 2AZPA 5IWEA 4K8LA 4IJZA 5HA4A 2OTNA 4IK0A 4JBDA 1XUAA 4JUUA 2H9FA 2PW0A 4J9XA 3EDNA 2GKEA 1U1WA 1BWZA 1W61A 4LB0A 2GKJA 4Q2HA 1S7JA 5H2YA 4JD7A 4Q60A 4DUNA 5M47A 1XUBA 1YM5A 4J9WA 1U0KA 3G7KA 2PVZA 1TM0A 4K7XA 3FVEA 4JCIA 1U1VA 1U1XA 1QY9A 1W62A 1QYAA 3EKMA 2Q9JA
chains in the Genus database with same CATH superfamily
4K7GB 1GQZA 2AZPA 5IWEA 2ZXRA 2HAWA 2QB6A 1WPMA 4JBDA 4JUUA 2H9FA 4J9XA 4LS9A 1S7JA 4JD7A 1XUBA 4J9WA 2KW7A 3G7KA 4OA3A 3PVHA 2QB8A 1U1XA 4LB0A 2Q9HA 3DEVA 1IR6A 3PW9A 5H2GA 4K8LA 4IJZA 1XUAA 2ENXA 3EDNA 1W61A 2ZXOA 4LG3A 4Q2HA 2PVZA 4RPAA 1TM0A 2YMAA 4PY9A 1WPPA 1W62A 1QYAA 3EKMA 2Q9JA 3EJXA 1SDJA 2MPBA 5HA4A 1K20A 2PW0A 2GKEA 1U1WA 1BWZA 2LT2A 3ICJA 5H2YA 4Q60A 4DUNA 5M47A 1YM5A 1U0KA 3PTJA 4K7XA 3W5WA 5ANPA 2KPTA 1T6KA 2EB0A 2IW4A 2OTNA 4IK0A 1K23A 2ZXPA 3IGHX 2GKJA 4GL6A 2QB7A 3FVEA 3WQZA 4JCIA 1U1VA 2ZVFA 1QY9A 3G98A 1I74A
chains in the Genus database with same CATH topology
4K7GB 1GQZA 2AZPA 5IWEA 2ZXRA 2HAWA 2QB6A 1WPMA 4JBDA 4JUUA 2H9FA 4J9XA 4LS9A 1S7JA 4JD7A 1XUBA 4J9WA 2KW7A 3G7KA 4OA3A 3PVHA 2QB8A 1U1XA 4LB0A 2Q9HA 3DEVA 1IR6A 3PW9A 5H2GA 4K8LA 4IJZA 1XUAA 2ENXA 3EDNA 1W61A 2ZXOA 4LG3A 4Q2HA 2PVZA 4RPAA 1TM0A 2YMAA 4PY9A 1WPPA 1W62A 1QYAA 3EKMA 2Q9JA 3EJXA 1SDJA 2MPBA 5HA4A 1K20A 2PW0A 2GKEA 1U1WA 1BWZA 2LT2A 3ICJA 5H2YA 4Q60A 4DUNA 5M47A 1YM5A 1U0KA 3PTJA 4K7XA 3W5WA 5ANPA 2KPTA 1T6KA 2EB0A 2IW4A 2OTNA 4IK0A 1K23A 2ZXPA 3IGHX 2GKJA 4GL6A 2QB7A 3FVEA 3WQZA 4JCIA 1U1VA 2ZVFA 1QY9A 3G98A 1I74A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q9H A;  4K7G B;  3EJX A;  5H2G A;  1GQZ A;  1SDJ A;  1T6K A;  2AZP A;  5IWE A;  4K8L A;  4IJZ A;  5HA4 A;  2OTN A;  4IK0 A;  4JBD A;  1XUA A;  4JUU A;  2H9F A;  2PW0 A;  4J9X A;  3EDN A;  2GKE A;  1U1W A;  1BWZ A;  1W61 A;  4LB0 A;  2GKJ A;  4Q2H A;  1S7J A;  5H2Y A;  4JD7 A;  4Q60 A;  4DUN A;  5M47 A;  1XUB A;  1YM5 A;  4J9W A;  1U0K A;  3G7K A;  2PVZ A;  1TM0 A;  4K7X A;  3FVE A;  4JCI A;  1U1V A;  1U1X A;  1QY9 A;  1W62 A;  1QYA A;  3EKM A;  2Q9J A; 
#chains in the Genus database with same CATH topology
 4K7G B;  1GQZ A;  2AZP A;  5IWE A;  2ZXR A;  2HAW A;  2QB6 A;  1WPM A;  4JBD A;  4JUU A;  2H9F A;  4J9X A;  4LS9 A;  1S7J A;  4JD7 A;  1XUB A;  4J9W A;  2KW7 A;  3G7K A;  4OA3 A;  3PVH A;  2QB8 A;  1U1X A;  4LB0 A;  2Q9H A;  3DEV A;  1IR6 A;  3PW9 A;  5H2G A;  4K8L A;  4IJZ A;  1XUA A;  2ENX A;  3EDN A;  1W61 A;  2ZXO A;  4LG3 A;  4Q2H A;  2PVZ A;  4RPA A;  1TM0 A;  2YMA A;  4PY9 A;  1WPP A;  1W62 A;  1QYA A;  3EKM A;  2Q9J A;  3EJX A;  1SDJ A;  2MPB A;  5HA4 A;  1K20 A;  2PW0 A;  2GKE A;  1U1W A;  1BWZ A;  2LT2 A;  3ICJ A;  5H2Y A;  4Q60 A;  4DUN A;  5M47 A;  1YM5 A;  1U0K A;  3PTJ A;  4K7X A;  3W5W A;  5ANP A;  2KPT A;  1T6K A;  2EB0 A;  2IW4 A;  2OTN A;  4IK0 A;  1K23 A;  2ZXP A;  3IGH X;  2GKJ A;  4GL6 A;  2QB7 A;  3FVE A;  3WQZ A;  4JCI A;  1U1V A;  2ZVF A;  1QY9 A;  3G98 A;  1I74 A; 
#chains in the Genus database with same CATH homology
 4K7G B;  1GQZ A;  2AZP A;  5IWE A;  2ZXR A;  2HAW A;  2QB6 A;  1WPM A;  4JBD A;  4JUU A;  2H9F A;  4J9X A;  4LS9 A;  1S7J A;  4JD7 A;  1XUB A;  4J9W A;  2KW7 A;  3G7K A;  4OA3 A;  3PVH A;  2QB8 A;  1U1X A;  4LB0 A;  2Q9H A;  3DEV A;  1IR6 A;  3PW9 A;  5H2G A;  4K8L A;  4IJZ A;  1XUA A;  2ENX A;  3EDN A;  1W61 A;  2ZXO A;  4LG3 A;  4Q2H A;  2PVZ A;  4RPA A;  1TM0 A;  2YMA A;  4PY9 A;  1WPP A;  1W62 A;  1QYA A;  3EKM A;  2Q9J A;  3EJX A;  1SDJ A;  2MPB A;  5HA4 A;  1K20 A;  2PW0 A;  2GKE A;  1U1W A;  1BWZ A;  2LT2 A;  3ICJ A;  5H2Y A;  4Q60 A;  4DUN A;  5M47 A;  1YM5 A;  1U0K A;  3PTJ A;  4K7X A;  3W5W A;  5ANP A;  2KPT A;  1T6K A;  2EB0 A;  2IW4 A;  2OTN A;  4IK0 A;  1K23 A;  2ZXP A;  3IGH X;  2GKJ A;  4GL6 A;  2QB7 A;  3FVE A;  3WQZ A;  4JCI A;  1U1V A;  2ZVF A;  1QY9 A;  3G98 A;  1I74 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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