1U1WA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA01
4IJZA 1S7JA 3EDNA 2Q9HA 3G7KA 2AZPA 2Q9JA 4J9WA 4K8LA 1XUBA 1XUAA 5HA4A 1T6KA 1U1WA 4IK0A 1U1XA 1YM5A 4JD7A 1W61A 1W62A 3EJXA 1U0KA 5H2YA 4LB0A 2OTNA 2GKEA 1BWZA 2PW0A 4JCIA 5M47A 3EKMA 3FVEA 1TM0A 1SDJA 4JBDA 4K7GB 2GKJA 1QYAA 2H9FA 4J9XA 4Q2HA 4DUNA 5H2GA 1U1VA 5IWEA 4JUUA 1QY9A 4Q60A 4K7XA 2PVZA 1GQZA
chains in the Genus database with same CATH superfamily
1XUAA 1WPMA 1U0KA 4LS9A 1K23A 2QB7A 5ANPA 1IR6A 2GKJA 1K20A 2EB0A 1QYAA 3W5WA 4OA3A 4DUNA 1U1VA 4K7XA 3G98A 4IJZA 4LG3A 2Q9HA 3IGHX 2AZPA 2HAWA 3PW9A 1U1WA 2QB8A 1W61A 2ZVFA 1BWZA 5M47A 2ENXA 3PVHA 4J9XA 5H2GA 2ZXPA 5IWEA 2PVZA 3PTJA 2KW7A 1S7JA 4K8LA 2YMAA 1T6KA 4IK0A 3EJXA 2MPBA 3DEVA 4GL6A 2LT2A 2OTNA 4JCIA 4K7GB 1SDJA 4JBDA 2ZXRA 2H9FA 3ICJA 3WQZA 1QY9A 1GQZA 3EDNA 4J9WA 3G7KA 2Q9JA 1XUBA 5HA4A 2KPTA 1U1XA 1YM5A 2QB6A 2ZXOA 4JD7A 1W62A 2IW4A 5H2YA 4PY9A 4LB0A 1WPPA 2GKEA 2PW0A 4RPAA 3EKMA 3FVEA 1TM0A 4Q2HA 1I74A 4JUUA 4Q60A
chains in the Genus database with same CATH topology
1XUAA 1WPMA 1U0KA 4LS9A 1K23A 2QB7A 5ANPA 1IR6A 2GKJA 1K20A 2EB0A 1QYAA 3W5WA 4OA3A 4DUNA 1U1VA 4K7XA 3G98A 4IJZA 4LG3A 2Q9HA 3IGHX 2AZPA 2HAWA 3PW9A 1U1WA 2QB8A 1W61A 2ZVFA 1BWZA 5M47A 2ENXA 3PVHA 4J9XA 5H2GA 2ZXPA 5IWEA 2PVZA 3PTJA 2KW7A 1S7JA 4K8LA 2YMAA 1T6KA 4IK0A 3EJXA 2MPBA 3DEVA 4GL6A 2LT2A 2OTNA 4JCIA 4K7GB 1SDJA 4JBDA 2ZXRA 2H9FA 3ICJA 3WQZA 1QY9A 1GQZA 3EDNA 4J9WA 3G7KA 2Q9JA 1XUBA 5HA4A 2KPTA 1U1XA 1YM5A 2QB6A 2ZXOA 4JD7A 1W62A 2IW4A 5H2YA 4PY9A 4LB0A 1WPPA 2GKEA 2PW0A 4RPAA 3EKMA 3FVEA 1TM0A 4Q2HA 1I74A 4JUUA 4Q60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IJZ A;  1S7J A;  3EDN A;  2Q9H A;  3G7K A;  2AZP A;  2Q9J A;  4J9W A;  4K8L A;  1XUB A;  1XUA A;  5HA4 A;  1T6K A;  1U1W A;  4IK0 A;  1U1X A;  1YM5 A;  4JD7 A;  1W61 A;  1W62 A;  3EJX A;  1U0K A;  5H2Y A;  4LB0 A;  2OTN A;  2GKE A;  1BWZ A;  2PW0 A;  4JCI A;  5M47 A;  3EKM A;  3FVE A;  1TM0 A;  1SDJ A;  4JBD A;  4K7G B;  2GKJ A;  1QYA A;  2H9F A;  4J9X A;  4Q2H A;  4DUN A;  5H2G A;  1U1V A;  5IWE A;  4JUU A;  1QY9 A;  4Q60 A;  4K7X A;  2PVZ A;  1GQZ A; 
#chains in the Genus database with same CATH topology
 1XUA A;  1WPM A;  1U0K A;  4LS9 A;  1K23 A;  2QB7 A;  5ANP A;  1IR6 A;  2GKJ A;  1K20 A;  2EB0 A;  1QYA A;  3W5W A;  4OA3 A;  4DUN A;  1U1V A;  4K7X A;  3G98 A;  4IJZ A;  4LG3 A;  2Q9H A;  3IGH X;  2AZP A;  2HAW A;  3PW9 A;  1U1W A;  2QB8 A;  1W61 A;  2ZVF A;  1BWZ A;  5M47 A;  2ENX A;  3PVH A;  4J9X A;  5H2G A;  2ZXP A;  5IWE A;  2PVZ A;  3PTJ A;  2KW7 A;  1S7J A;  4K8L A;  2YMA A;  1T6K A;  4IK0 A;  3EJX A;  2MPB A;  3DEV A;  4GL6 A;  2LT2 A;  2OTN A;  4JCI A;  4K7G B;  1SDJ A;  4JBD A;  2ZXR A;  2H9F A;  3ICJ A;  3WQZ A;  1QY9 A;  1GQZ A;  3EDN A;  4J9W A;  3G7K A;  2Q9J A;  1XUB A;  5HA4 A;  2KPT A;  1U1X A;  1YM5 A;  2QB6 A;  2ZXO A;  4JD7 A;  1W62 A;  2IW4 A;  5H2Y A;  4PY9 A;  4LB0 A;  1WPP A;  2GKE A;  2PW0 A;  4RPA A;  3EKM A;  3FVE A;  1TM0 A;  4Q2H A;  1I74 A;  4JUU A;  4Q60 A; 
#chains in the Genus database with same CATH homology
 1XUA A;  1WPM A;  1U0K A;  4LS9 A;  1K23 A;  2QB7 A;  5ANP A;  1IR6 A;  2GKJ A;  1K20 A;  2EB0 A;  1QYA A;  3W5W A;  4OA3 A;  4DUN A;  1U1V A;  4K7X A;  3G98 A;  4IJZ A;  4LG3 A;  2Q9H A;  3IGH X;  2AZP A;  2HAW A;  3PW9 A;  1U1W A;  2QB8 A;  1W61 A;  2ZVF A;  1BWZ A;  5M47 A;  2ENX A;  3PVH A;  4J9X A;  5H2G A;  2ZXP A;  5IWE A;  2PVZ A;  3PTJ A;  2KW7 A;  1S7J A;  4K8L A;  2YMA A;  1T6K A;  4IK0 A;  3EJX A;  2MPB A;  3DEV A;  4GL6 A;  2LT2 A;  2OTN A;  4JCI A;  4K7G B;  1SDJ A;  4JBD A;  2ZXR A;  2H9F A;  3ICJ A;  3WQZ A;  1QY9 A;  1GQZ A;  3EDN A;  4J9W A;  3G7K A;  2Q9J A;  1XUB A;  5HA4 A;  2KPT A;  1U1X A;  1YM5 A;  2QB6 A;  2ZXO A;  4JD7 A;  1W62 A;  2IW4 A;  5H2Y A;  4PY9 A;  4LB0 A;  1WPP A;  2GKE A;  2PW0 A;  4RPA A;  3EKM A;  3FVE A;  1TM0 A;  4Q2H A;  1I74 A;  4JUU A;  4Q60 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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