1U1WA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA01
2Q9JA 4IJZA 1GQZA 2AZPA 2GKEA 2Q9HA 4JD7A 1QY9A 4JUUA 3EJXA 4JBDA 4JCIA 1W61A 4J9WA 2PVZA 1U0KA 2H9FA 1YM5A 1W62A 1BWZA 4DUNA 3FVEA 5HA4A 1U1VA 1T6KA 1S7JA 4K8LA 2GKJA 3EKMA 5IWEA 4J9XA 1QYAA 5M47A 4IK0A 4K7XA 1XUBA 4LB0A 1U1WA 4Q60A 1XUAA 1TM0A 5H2YA 1SDJA 4Q2HA 5H2GA 2PW0A 1U1XA 3G7KA 3EDNA 2OTNA 4K7GB
chains in the Genus database with same CATH superfamily
3W5WA 2AZPA 1QY9A 2QB6A 1WPPA 2EB0A 4PY9A 3ICJA 3FVEA 2MPBA 1T6KA 4LS9A 2QB8A 3EKMA 5M47A 4IK0A 4K7XA 1K20A 3DEVA 1TM0A 5H2YA 2OTNA 5HA4A 4K7GB 4JBDA 4J9WA 1YM5A 1W62A 1BWZA 2IW4A 2QB7A 2ZXRA 1U1WA 1XUAA 2ZXOA 4Q2HA 2PW0A 2Q9JA 4GL6A 4IJZA 1WPMA 4JD7A 2Q9HA 4OA3A 2KW7A 4JUUA 4JCIA 2PVZA 1U0KA 2H9FA 4DUNA 5ANPA 3PW9A 4J9XA 1QYAA 1XUBA 2ZVFA 4LB0A 3WQZA 4Q60A 3PVHA 5H2GA 1U1XA 3EDNA 4RPAA 2LT2A 1GQZA 2GKEA 1K23A 3EJXA 1W61A 3G98A 2ENXA 4LG3A 1U1VA 1S7JA 4K8LA 2GKJA 2KPTA 5IWEA 3IGHX 2HAWA 2YMAA 3PTJA 1SDJA 1I74A 3G7KA 2ZXPA 1IR6A
chains in the Genus database with same CATH topology
3W5WA 2AZPA 1QY9A 2QB6A 1WPPA 2EB0A 4PY9A 3ICJA 3FVEA 2MPBA 1T6KA 4LS9A 2QB8A 3EKMA 5M47A 4IK0A 4K7XA 1K20A 3DEVA 1TM0A 5H2YA 2OTNA 5HA4A 4K7GB 4JBDA 4J9WA 1YM5A 1W62A 1BWZA 2IW4A 2QB7A 2ZXRA 1U1WA 1XUAA 2ZXOA 4Q2HA 2PW0A 2Q9JA 4GL6A 4IJZA 1WPMA 4JD7A 2Q9HA 4OA3A 2KW7A 4JUUA 4JCIA 2PVZA 1U0KA 2H9FA 4DUNA 5ANPA 3PW9A 4J9XA 1QYAA 1XUBA 2ZVFA 4LB0A 3WQZA 4Q60A 3PVHA 5H2GA 1U1XA 3EDNA 4RPAA 2LT2A 1GQZA 2GKEA 1K23A 3EJXA 1W61A 3G98A 2ENXA 4LG3A 1U1VA 1S7JA 4K8LA 2GKJA 2KPTA 5IWEA 3IGHX 2HAWA 2YMAA 3PTJA 1SDJA 1I74A 3G7KA 2ZXPA 1IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q9J A;  4IJZ A;  1GQZ A;  2AZP A;  2GKE A;  2Q9H A;  4JD7 A;  1QY9 A;  4JUU A;  3EJX A;  4JBD A;  4JCI A;  1W61 A;  4J9W A;  2PVZ A;  1U0K A;  2H9F A;  1YM5 A;  1W62 A;  1BWZ A;  4DUN A;  3FVE A;  5HA4 A;  1U1V A;  1T6K A;  1S7J A;  4K8L A;  2GKJ A;  3EKM A;  5IWE A;  4J9X A;  1QYA A;  5M47 A;  4IK0 A;  4K7X A;  1XUB A;  4LB0 A;  1U1W A;  4Q60 A;  1XUA A;  1TM0 A;  5H2Y A;  1SDJ A;  4Q2H A;  5H2G A;  2PW0 A;  1U1X A;  3G7K A;  3EDN A;  2OTN A;  4K7G B; 
#chains in the Genus database with same CATH topology
 3W5W A;  2AZP A;  1QY9 A;  2QB6 A;  1WPP A;  2EB0 A;  4PY9 A;  3ICJ A;  3FVE A;  2MPB A;  1T6K A;  4LS9 A;  2QB8 A;  3EKM A;  5M47 A;  4IK0 A;  4K7X A;  1K20 A;  3DEV A;  1TM0 A;  5H2Y A;  2OTN A;  5HA4 A;  4K7G B;  4JBD A;  4J9W A;  1YM5 A;  1W62 A;  1BWZ A;  2IW4 A;  2QB7 A;  2ZXR A;  1U1W A;  1XUA A;  2ZXO A;  4Q2H A;  2PW0 A;  2Q9J A;  4GL6 A;  4IJZ A;  1WPM A;  4JD7 A;  2Q9H A;  4OA3 A;  2KW7 A;  4JUU A;  4JCI A;  2PVZ A;  1U0K A;  2H9F A;  4DUN A;  5ANP A;  3PW9 A;  4J9X A;  1QYA A;  1XUB A;  2ZVF A;  4LB0 A;  3WQZ A;  4Q60 A;  3PVH A;  5H2G A;  1U1X A;  3EDN A;  4RPA A;  2LT2 A;  1GQZ A;  2GKE A;  1K23 A;  3EJX A;  1W61 A;  3G98 A;  2ENX A;  4LG3 A;  1U1V A;  1S7J A;  4K8L A;  2GKJ A;  2KPT A;  5IWE A;  3IGH X;  2HAW A;  2YMA A;  3PTJ A;  1SDJ A;  1I74 A;  3G7K A;  2ZXP A;  1IR6 A; 
#chains in the Genus database with same CATH homology
 3W5W A;  2AZP A;  1QY9 A;  2QB6 A;  1WPP A;  2EB0 A;  4PY9 A;  3ICJ A;  3FVE A;  2MPB A;  1T6K A;  4LS9 A;  2QB8 A;  3EKM A;  5M47 A;  4IK0 A;  4K7X A;  1K20 A;  3DEV A;  1TM0 A;  5H2Y A;  2OTN A;  5HA4 A;  4K7G B;  4JBD A;  4J9W A;  1YM5 A;  1W62 A;  1BWZ A;  2IW4 A;  2QB7 A;  2ZXR A;  1U1W A;  1XUA A;  2ZXO A;  4Q2H A;  2PW0 A;  2Q9J A;  4GL6 A;  4IJZ A;  1WPM A;  4JD7 A;  2Q9H A;  4OA3 A;  2KW7 A;  4JUU A;  4JCI A;  2PVZ A;  1U0K A;  2H9F A;  4DUN A;  5ANP A;  3PW9 A;  4J9X A;  1QYA A;  1XUB A;  2ZVF A;  4LB0 A;  3WQZ A;  4Q60 A;  3PVH A;  5H2G A;  1U1X A;  3EDN A;  4RPA A;  2LT2 A;  1GQZ A;  2GKE A;  1K23 A;  3EJX A;  1W61 A;  3G98 A;  2ENX A;  4LG3 A;  1U1V A;  1S7J A;  4K8L A;  2GKJ A;  2KPT A;  5IWE A;  3IGH X;  2HAW A;  2YMA A;  3PTJ A;  1SDJ A;  1I74 A;  3G7K A;  2ZXP A;  1IR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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