1S7JA

Crystal structure of phenazine biosynthesis protein phzf family (enterococcus faecalis)
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
260
structure length
260
Chain Sequence
MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALRWFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVKENRVIIGGTAKLFAKGEAYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of phenazine biosynthesis protein from Enterococcus faecalis
rcsb
molecule tags Biosynthetic protein
source organism Enterococcus faecalis
molecule keywords phenazine biosynthesis protein PhzF family
total genus 64
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1s7jA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1s7jA01
4LB0A 4Q2HA 3EJXA 4DUNA 1SDJA 1W61A 2PW0A 4JBDA 4JUUA 1XUAA 1QY9A 2AZPA 4IJZA 4K7GB 5HA4A 4JCIA 3EDNA 5M47A 1U1VA 1T6KA 4K8LA 1S7JA 1U1WA 1U1XA 1GQZA 3G7KA 4J9WA 4Q60A 1YM5A 4K7XA 1U0KA 4IK0A 1W62A 1TM0A 2GKJA 3FVEA 3EKMA 4J9XA 2H9FA 2OTNA 1QYAA 2Q9JA 2PVZA 2GKEA 1XUBA 5IWEA 4JD7A 5H2YA 1BWZA 2Q9HA 5H2GA
chains in the Genus database with same CATH superfamily
1SDJA 1W61A 4RPAA 2PW0A 4JUUA 1XUAA 2AZPA 2ZXPA 1U1VA 4K8LA 1U1WA 2QB7A 4GL6A 3IGHX 4PY9A 1K20A 3EKMA 4J9XA 1XUBA 4JD7A 5H2YA 1IR6A 3ICJA 2ZVFA 4IJZA 3EDNA 1K23A 1T6KA 2YMAA 1U1XA 2QB6A 2H9FA 3PVHA 1WPMA 2Q9HA 4DUNA 4JBDA 1QY9A 4LG3A 3WQZA 1S7JA 1GQZA 3G7KA 1I74A 2KPTA 2IW4A 3PTJA 1YM5A 4Q60A 4K7XA 4IK0A 2EB0A 1W62A 2GKJA 3FVEA 4OA3A 5ANPA 2OTNA 1QYAA 2QB8A 2HAWA 2LT2A 3W5WA 1BWZA 4LB0A 4Q2HA 3EJXA 3G98A 4K7GB 5HA4A 4JCIA 5M47A 2KW7A 4J9WA 3PW9A 2ENXA 1U0KA 2ZXOA 1TM0A 1WPPA 2MPBA 2Q9JA 2ZXRA 2PVZA 2GKEA 5IWEA 4LS9A 3DEVA 5H2GA
chains in the Genus database with same CATH topology
1SDJA 1W61A 4RPAA 2PW0A 4JUUA 1XUAA 2AZPA 2ZXPA 1U1VA 4K8LA 1U1WA 2QB7A 4GL6A 3IGHX 4PY9A 1K20A 3EKMA 4J9XA 1XUBA 4JD7A 5H2YA 1IR6A 3ICJA 2ZVFA 4IJZA 3EDNA 1K23A 1T6KA 2YMAA 1U1XA 2QB6A 2H9FA 3PVHA 1WPMA 2Q9HA 4DUNA 4JBDA 1QY9A 4LG3A 3WQZA 1S7JA 1GQZA 3G7KA 1I74A 2KPTA 2IW4A 3PTJA 1YM5A 4Q60A 4K7XA 4IK0A 2EB0A 1W62A 2GKJA 3FVEA 4OA3A 5ANPA 2OTNA 1QYAA 2QB8A 2HAWA 2LT2A 3W5WA 1BWZA 4LB0A 4Q2HA 3EJXA 3G98A 4K7GB 5HA4A 4JCIA 5M47A 2KW7A 4J9WA 3PW9A 2ENXA 1U0KA 2ZXOA 1TM0A 1WPPA 2MPBA 2Q9JA 2ZXRA 2PVZA 2GKEA 5IWEA 4LS9A 3DEVA 5H2GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LB0 A;  4Q2H A;  3EJX A;  4DUN A;  1SDJ A;  1W61 A;  2PW0 A;  4JBD A;  4JUU A;  1XUA A;  1QY9 A;  2AZP A;  4IJZ A;  4K7G B;  5HA4 A;  4JCI A;  3EDN A;  5M47 A;  1U1V A;  1T6K A;  4K8L A;  1S7J A;  1U1W A;  1U1X A;  1GQZ A;  3G7K A;  4J9W A;  4Q60 A;  1YM5 A;  4K7X A;  1U0K A;  4IK0 A;  1W62 A;  1TM0 A;  2GKJ A;  3FVE A;  3EKM A;  4J9X A;  2H9F A;  2OTN A;  1QYA A;  2Q9J A;  2PVZ A;  2GKE A;  1XUB A;  5IWE A;  4JD7 A;  5H2Y A;  1BWZ A;  2Q9H A;  5H2G A; 
#chains in the Genus database with same CATH topology
 1SDJ A;  1W61 A;  4RPA A;  2PW0 A;  4JUU A;  1XUA A;  2AZP A;  2ZXP A;  1U1V A;  4K8L A;  1U1W A;  2QB7 A;  4GL6 A;  3IGH X;  4PY9 A;  1K20 A;  3EKM A;  4J9X A;  1XUB A;  4JD7 A;  5H2Y A;  1IR6 A;  3ICJ A;  2ZVF A;  4IJZ A;  3EDN A;  1K23 A;  1T6K A;  2YMA A;  1U1X A;  2QB6 A;  2H9F A;  3PVH A;  1WPM A;  2Q9H A;  4DUN A;  4JBD A;  1QY9 A;  4LG3 A;  3WQZ A;  1S7J A;  1GQZ A;  3G7K A;  1I74 A;  2KPT A;  2IW4 A;  3PTJ A;  1YM5 A;  4Q60 A;  4K7X A;  4IK0 A;  2EB0 A;  1W62 A;  2GKJ A;  3FVE A;  4OA3 A;  5ANP A;  2OTN A;  1QYA A;  2QB8 A;  2HAW A;  2LT2 A;  3W5W A;  1BWZ A;  4LB0 A;  4Q2H A;  3EJX A;  3G98 A;  4K7G B;  5HA4 A;  4JCI A;  5M47 A;  2KW7 A;  4J9W A;  3PW9 A;  2ENX A;  1U0K A;  2ZXO A;  1TM0 A;  1WPP A;  2MPB A;  2Q9J A;  2ZXR A;  2PVZ A;  2GKE A;  5IWE A;  4LS9 A;  3DEV A;  5H2G A; 
#chains in the Genus database with same CATH homology
 1SDJ A;  1W61 A;  4RPA A;  2PW0 A;  4JUU A;  1XUA A;  2AZP A;  2ZXP A;  1U1V A;  4K8L A;  1U1W A;  2QB7 A;  4GL6 A;  3IGH X;  4PY9 A;  1K20 A;  3EKM A;  4J9X A;  1XUB A;  4JD7 A;  5H2Y A;  1IR6 A;  3ICJ A;  2ZVF A;  4IJZ A;  3EDN A;  1K23 A;  1T6K A;  2YMA A;  1U1X A;  2QB6 A;  2H9F A;  3PVH A;  1WPM A;  2Q9H A;  4DUN A;  4JBD A;  1QY9 A;  4LG3 A;  3WQZ A;  1S7J A;  1GQZ A;  3G7K A;  1I74 A;  2KPT A;  2IW4 A;  3PTJ A;  1YM5 A;  4Q60 A;  4K7X A;  4IK0 A;  2EB0 A;  1W62 A;  2GKJ A;  3FVE A;  4OA3 A;  5ANP A;  2OTN A;  1QYA A;  2QB8 A;  2HAW A;  2LT2 A;  3W5W A;  1BWZ A;  4LB0 A;  4Q2H A;  3EJX A;  3G98 A;  4K7G B;  5HA4 A;  4JCI A;  5M47 A;  2KW7 A;  4J9W A;  3PW9 A;  2ENX A;  1U0K A;  2ZXO A;  1TM0 A;  1WPP A;  2MPB A;  2Q9J A;  2ZXR A;  2PVZ A;  2GKE A;  5IWE A;  4LS9 A;  3DEV A;  5H2G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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