1U1WA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-9)TI1 (26-29)TIV1 (23-26)TII2 (13-16)S16 (246-255)TII1 (8-11)S14 (205-208)S2 (18-23)TVIII7 (208-211)AH2 (73-85)S3 (45-50)EMPTYTVIII1 (43-46)S4 (58-64)TI2 (64-67)S5 (67-69)S6 (91-96)TVIII2 (69-72)TI3 (96-99)S7 (99-108)TIV3 (107-110)3H2 (212-214)S17 (258-276)S9 (123-126)S10 (144-150)TIV4 (127-130)TVIII5 (177-180)AH3 (130-137)TVIII4 (142-145)TIV5 (150-153)S11 (154-159)TIV7 (179-182)3H1 (201-203)S12 (183-190)AH4 (163-168)S13 (193-200)3H3 (240-242)TII'1 (190-193)S15 (234-238)TII3 (229-232)TI4 (255-258)AH1 (31-41)TIV2 (52-55)AH5 (173-177)AH6 (215-225)TVIII3 (89-92)S8 (111-118)Updating...
connected with : NaN
publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
molecule tags Isomerase, lyase
source organism Pseudomonas fluorescens
molecule keywords Phenazine biosynthesis protein phzF
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1wA01
1U0KA 1W61A 1S7JA 5HA4A 2PVZA 1QY9A 1YM5A 4J9XA 2Q9HA 4JCIA 1T6KA 1QYAA 4JD7A 3EDNA 4K7GB 1GQZA 2GKJA 4Q60A 1XUBA 4IK0A 1U1XA 4Q2HA 5H2YA 4JUUA 4K7XA 5IWEA 2OTNA 4J9WA 3FVEA 3EKMA 2H9FA 2AZPA 1SDJA 1U1WA 3G7KA 4K8LA 1XUAA 2PW0A 2GKEA 3EJXA 1W62A 4LB0A 1U1VA 4DUNA 4JBDA 2Q9JA 5H2GA 1BWZA 1TM0A 5M47A 4IJZA
chains in the Genus database with same CATH superfamily
1W61A 5HA4A 1S7JA 4JCIA 1QYAA 2EB0A 3EDNA 4Q60A 1WPMA 4IK0A 5ANPA 2QB6A 5H2YA 5IWEA 3G7KA 3EKMA 2AZPA 2MPBA 1U1WA 3EJXA 4LG3A 2ENXA 1IR6A 3PVHA 2PVZA 1YM5A 4J9XA 1T6KA 2GKJA 2QB7A 4LS9A 3IGHX 4PY9A 1U1XA 2ZXPA 4K7XA 4J9WA 2QB8A 3G98A 1XUAA 2PW0A 3PW9A 1I74A 4GL6A 2KW7A 1W62A 3PTJA 4LB0A 1U1VA 3DEVA 4JBDA 2ZVFA 2Q9HA 1WPPA 1GQZA 2YMAA 4RPAA 4JUUA 2OTNA 4OA3A 2LT2A 3FVEA 4K8LA 2ZXRA 3WQZA 3W5WA 2ZXOA 1BWZA 1TM0A 4IJZA 1U0KA 2IW4A 1K23A 2HAWA 1QY9A 4JD7A 4K7GB 2KPTA 1XUBA 4Q2HA 3ICJA 2H9FA 1SDJA 1K20A 2GKEA 4DUNA 2Q9JA 5H2GA 5M47A
chains in the Genus database with same CATH topology
1W61A 5HA4A 1S7JA 4JCIA 1QYAA 2EB0A 3EDNA 4Q60A 1WPMA 4IK0A 5ANPA 2QB6A 5H2YA 5IWEA 3G7KA 3EKMA 2AZPA 2MPBA 1U1WA 3EJXA 4LG3A 2ENXA 1IR6A 3PVHA 2PVZA 1YM5A 4J9XA 1T6KA 2GKJA 2QB7A 4LS9A 3IGHX 4PY9A 1U1XA 2ZXPA 4K7XA 4J9WA 2QB8A 3G98A 1XUAA 2PW0A 3PW9A 1I74A 4GL6A 2KW7A 1W62A 3PTJA 4LB0A 1U1VA 3DEVA 4JBDA 2ZVFA 2Q9HA 1WPPA 1GQZA 2YMAA 4RPAA 4JUUA 2OTNA 4OA3A 2LT2A 3FVEA 4K8LA 2ZXRA 3WQZA 3W5WA 2ZXOA 1BWZA 1TM0A 4IJZA 1U0KA 2IW4A 1K23A 2HAWA 1QY9A 4JD7A 4K7GB 2KPTA 1XUBA 4Q2HA 3ICJA 2H9FA 1SDJA 1K20A 2GKEA 4DUNA 2Q9JA 5H2GA 5M47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U0K A;  1W61 A;  1S7J A;  5HA4 A;  2PVZ A;  1QY9 A;  1YM5 A;  4J9X A;  2Q9H A;  4JCI A;  1T6K A;  1QYA A;  4JD7 A;  3EDN A;  4K7G B;  1GQZ A;  2GKJ A;  4Q60 A;  1XUB A;  4IK0 A;  1U1X A;  4Q2H A;  5H2Y A;  4JUU A;  4K7X A;  5IWE A;  2OTN A;  4J9W A;  3FVE A;  3EKM A;  2H9F A;  2AZP A;  1SDJ A;  1U1W A;  3G7K A;  4K8L A;  1XUA A;  2PW0 A;  2GKE A;  3EJX A;  1W62 A;  4LB0 A;  1U1V A;  4DUN A;  4JBD A;  2Q9J A;  5H2G A;  1BWZ A;  1TM0 A;  5M47 A;  4IJZ A; 
#chains in the Genus database with same CATH topology
 1W61 A;  5HA4 A;  1S7J A;  4JCI A;  1QYA A;  2EB0 A;  3EDN A;  4Q60 A;  1WPM A;  4IK0 A;  5ANP A;  2QB6 A;  5H2Y A;  5IWE A;  3G7K A;  3EKM A;  2AZP A;  2MPB A;  1U1W A;  3EJX A;  4LG3 A;  2ENX A;  1IR6 A;  3PVH A;  2PVZ A;  1YM5 A;  4J9X A;  1T6K A;  2GKJ A;  2QB7 A;  4LS9 A;  3IGH X;  4PY9 A;  1U1X A;  2ZXP A;  4K7X A;  4J9W A;  2QB8 A;  3G98 A;  1XUA A;  2PW0 A;  3PW9 A;  1I74 A;  4GL6 A;  2KW7 A;  1W62 A;  3PTJ A;  4LB0 A;  1U1V A;  3DEV A;  4JBD A;  2ZVF A;  2Q9H A;  1WPP A;  1GQZ A;  2YMA A;  4RPA A;  4JUU A;  2OTN A;  4OA3 A;  2LT2 A;  3FVE A;  4K8L A;  2ZXR A;  3WQZ A;  3W5W A;  2ZXO A;  1BWZ A;  1TM0 A;  4IJZ A;  1U0K A;  2IW4 A;  1K23 A;  2HAW A;  1QY9 A;  4JD7 A;  4K7G B;  2KPT A;  1XUB A;  4Q2H A;  3ICJ A;  2H9F A;  1SDJ A;  1K20 A;  2GKE A;  4DUN A;  2Q9J A;  5H2G A;  5M47 A; 
#chains in the Genus database with same CATH homology
 1W61 A;  5HA4 A;  1S7J A;  4JCI A;  1QYA A;  2EB0 A;  3EDN A;  4Q60 A;  1WPM A;  4IK0 A;  5ANP A;  2QB6 A;  5H2Y A;  5IWE A;  3G7K A;  3EKM A;  2AZP A;  2MPB A;  1U1W A;  3EJX A;  4LG3 A;  2ENX A;  1IR6 A;  3PVH A;  2PVZ A;  1YM5 A;  4J9X A;  1T6K A;  2GKJ A;  2QB7 A;  4LS9 A;  3IGH X;  4PY9 A;  1U1X A;  2ZXP A;  4K7X A;  4J9W A;  2QB8 A;  3G98 A;  1XUA A;  2PW0 A;  3PW9 A;  1I74 A;  4GL6 A;  2KW7 A;  1W62 A;  3PTJ A;  4LB0 A;  1U1V A;  3DEV A;  4JBD A;  2ZVF A;  2Q9H A;  1WPP A;  1GQZ A;  2YMA A;  4RPA A;  4JUU A;  2OTN A;  4OA3 A;  2LT2 A;  3FVE A;  4K8L A;  2ZXR A;  3WQZ A;  3W5W A;  2ZXO A;  1BWZ A;  1TM0 A;  4IJZ A;  1U0K A;  2IW4 A;  1K23 A;  2HAW A;  1QY9 A;  4JD7 A;  4K7G B;  2KPT A;  1XUB A;  4Q2H A;  3ICJ A;  2H9F A;  1SDJ A;  1K20 A;  2GKE A;  4DUN A;  2Q9J A;  5H2G A;  5M47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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